Portishead Branch Line (Metrowest Phase 1)
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Phylogeography of a Tertiary Relict Plant, Meconopsis Cambrica (Papaveraceae), Implies the Existence of Northern Refugia for a Temperate Herb
Article (refereed) - postprint Valtueña, Francisco J.; Preston, Chris D.; Kadereit, Joachim W. 2012 Phylogeography of a Tertiary relict plant, Meconopsis cambrica (Papaveraceae), implies the existence of northern refugia for a temperate herb. Molecular Ecology, 21 (6). 1423-1437. 10.1111/j.1365- 294X.2012.05473.x Copyright © 2012 Blackwell Publishing Ltd. This version available http://nora.nerc.ac.uk/17105/ NERC has developed NORA to enable users to access research outputs wholly or partially funded by NERC. Copyright and other rights for material on this site are retained by the rights owners. Users should read the terms and conditions of use of this material at http://nora.nerc.ac.uk/policies.html#access This document is the author’s final manuscript version of the journal article, incorporating any revisions agreed during the peer review process. Some differences between this and the publisher’s version remain. You are advised to consult the publisher’s version if you wish to cite from this article. The definitive version is available at http://onlinelibrary.wiley.com Contact CEH NORA team at [email protected] The NERC and CEH trademarks and logos (‘the Trademarks’) are registered trademarks of NERC in the UK and other countries, and may not be used without the prior written consent of the Trademark owner. 1 Phylogeography of a Tertiary relict plant, Meconopsis cambrica 2 (Papaveraceae), implies the existence of northern refugia for a 3 temperate herb 4 Francisco J. Valtueña*†, Chris D. Preston‡ and Joachim W. Kadereit† 5 *Área de Botánica, Facultad deCiencias, Universidad de Extremadura, Avda. de Elvas, s.n. -
Phylogenetic Position and Generic Limits of Arabidopsis (Brassicaceae)
PHYLOGENETIC POSITION Steve L. O'Kane, Jr.2 and Ihsan A. 3 AND GENERIC LIMITS OF Al-Shehbaz ARABIDOPSIS (BRASSICACEAE) BASED ON SEQUENCES OF NUCLEAR RIBOSOMAL DNA1 ABSTRACT The primary goals of this study were to assess the generic limits and monophyly of Arabidopsis and to investigate its relationships to related taxa in the family Brassicaceae. Sequences of the internal transcribed spacer region (ITS-1 and ITS-2) of nuclear ribosomal DNA, including 5.8S rDNA, were used in maximum parsimony analyses to construct phylogenetic trees. An attempt was made to include all species currently or recently included in Arabidopsis, as well as species suggested to be close relatives. Our ®ndings show that Arabidopsis, as traditionally recognized, is polyphyletic. The genus, as recircumscribed based on our results, (1) now includes species previously placed in Cardaminopsis and Hylandra as well as three species of Arabis and (2) excludes species now placed in Crucihimalaya, Beringia, Olimar- abidopsis, Pseudoarabidopsis, and Ianhedgea. Key words: Arabidopsis, Arabis, Beringia, Brassicaceae, Crucihimalaya, ITS phylogeny, Olimarabidopsis, Pseudoar- abidopsis. Arabidopsis thaliana (L.) Heynh. was ®rst rec- netic studies and has played a major role in un- ommended as a model plant for experimental ge- derstanding the various biological processes in netics over a half century ago (Laibach, 1943). In higher plants (see references in Somerville & Mey- recent years, many biologists worldwide have fo- erowitz, 2002). The intraspeci®c phylogeny of A. cused their research on this plant. As indicated by thaliana has been examined by Vander Zwan et al. Patrusky (1991), the widespread acceptance of A. (2000). Despite the acceptance of A. -
Flora-Lab-Manual.Pdf
LabLab MManualanual ttoo tthehe Jane Mygatt Juliana Medeiros Flora of New Mexico Lab Manual to the Flora of New Mexico Jane Mygatt Juliana Medeiros University of New Mexico Herbarium Museum of Southwestern Biology MSC03 2020 1 University of New Mexico Albuquerque, NM, USA 87131-0001 October 2009 Contents page Introduction VI Acknowledgments VI Seed Plant Phylogeny 1 Timeline for the Evolution of Seed Plants 2 Non-fl owering Seed Plants 3 Order Gnetales Ephedraceae 4 Order (ungrouped) The Conifers Cupressaceae 5 Pinaceae 8 Field Trips 13 Sandia Crest 14 Las Huertas Canyon 20 Sevilleta 24 West Mesa 30 Rio Grande Bosque 34 Flowering Seed Plants- The Monocots 40 Order Alistmatales Lemnaceae 41 Order Asparagales Iridaceae 42 Orchidaceae 43 Order Commelinales Commelinaceae 45 Order Liliales Liliaceae 46 Order Poales Cyperaceae 47 Juncaceae 49 Poaceae 50 Typhaceae 53 Flowering Seed Plants- The Eudicots 54 Order (ungrouped) Nymphaeaceae 55 Order Proteales Platanaceae 56 Order Ranunculales Berberidaceae 57 Papaveraceae 58 Ranunculaceae 59 III page Core Eudicots 61 Saxifragales Crassulaceae 62 Saxifragaceae 63 Rosids Order Zygophyllales Zygophyllaceae 64 Rosid I Order Cucurbitales Cucurbitaceae 65 Order Fabales Fabaceae 66 Order Fagales Betulaceae 69 Fagaceae 70 Juglandaceae 71 Order Malpighiales Euphorbiaceae 72 Linaceae 73 Salicaceae 74 Violaceae 75 Order Rosales Elaeagnaceae 76 Rosaceae 77 Ulmaceae 81 Rosid II Order Brassicales Brassicaceae 82 Capparaceae 84 Order Geraniales Geraniaceae 85 Order Malvales Malvaceae 86 Order Myrtales Onagraceae -
Illustration Sources
APPENDIX ONE ILLUSTRATION SOURCES REF. CODE ABR Abrams, L. 1923–1960. Illustrated flora of the Pacific states. Stanford University Press, Stanford, CA. ADD Addisonia. 1916–1964. New York Botanical Garden, New York. Reprinted with permission from Addisonia, vol. 18, plate 579, Copyright © 1933, The New York Botanical Garden. ANDAnderson, E. and Woodson, R.E. 1935. The species of Tradescantia indigenous to the United States. Arnold Arboretum of Harvard University, Cambridge, MA. Reprinted with permission of the Arnold Arboretum of Harvard University. ANN Hollingworth A. 2005. Original illustrations. Published herein by the Botanical Research Institute of Texas, Fort Worth. Artist: Anne Hollingworth. ANO Anonymous. 1821. Medical botany. E. Cox and Sons, London. ARM Annual Rep. Missouri Bot. Gard. 1889–1912. Missouri Botanical Garden, St. Louis. BA1 Bailey, L.H. 1914–1917. The standard cyclopedia of horticulture. The Macmillan Company, New York. BA2 Bailey, L.H. and Bailey, E.Z. 1976. Hortus third: A concise dictionary of plants cultivated in the United States and Canada. Revised and expanded by the staff of the Liberty Hyde Bailey Hortorium. Cornell University. Macmillan Publishing Company, New York. Reprinted with permission from William Crepet and the L.H. Bailey Hortorium. Cornell University. BA3 Bailey, L.H. 1900–1902. Cyclopedia of American horticulture. Macmillan Publishing Company, New York. BB2 Britton, N.L. and Brown, A. 1913. An illustrated flora of the northern United States, Canada and the British posses- sions. Charles Scribner’s Sons, New York. BEA Beal, E.O. and Thieret, J.W. 1986. Aquatic and wetland plants of Kentucky. Kentucky Nature Preserves Commission, Frankfort. Reprinted with permission of Kentucky State Nature Preserves Commission. -
Flora Survey: Avon Gorge Woodlands SAC / Avon Woods SSSI
PORTISHEAD BRANCH LI NE PRELIMINARY ENVIRONMENTAL INFORMAT I O N R E P O R T V O L U M E 4 A P P E N D I X 9 .10 Flora Survey: Avon Gorge Woodlands SAC / Avon Woods SSSI Table of Contents Section Page Table of Contents .......................................................................................................................... i Acronyms and Abbreviations ....................................................................................................... iii Executive Summary ...................................................................................................................... v 1 Introduction ................................................................................................................. 1-1 1.1 Background to the DCO Scheme ................................................................................ 1-1 1.2 Habitat and Flora Survey............................................................................................ 1-2 1.3 Purpose and Structure of this Report ........................................................................ 1-3 2 Methods ....................................................................................................................... 2-1 2.1 Study area .................................................................................................................. 2-1 2.2 Desk Study ................................................................................................................. 2-1 2.3 Field Surveys ............................................................................................................. -
I INDIVIDUALISTIC and PHYLOGENETIC PERSPECTIVES ON
INDIVIDUALISTIC AND PHYLOGENETIC PERSPECTIVES ON PLANT COMMUNITY PATTERNS Jeffrey E. Ott A dissertation submitted to the faculty of the University of North Carolina at Chapel Hill in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biology Chapel Hill 2010 Approved by: Robert K. Peet Peter S. White Todd J. Vision Aaron Moody Paul S. Manos i ©2010 Jeffrey E. Ott ALL RIGHTS RESERVED ii ABSTRACT Jeffrey E. Ott Individualistic and Phylogenetic Perspectives on Plant Community Patterns (Under the direction of Robert K. Peet) Plant communities have traditionally been viewed as spatially discrete units structured by dominant species, and methods for characterizing community patterns have reflected this perspective. In this dissertation, I adopt an an alternative, individualistic community characterization approach that does not assume discreteness or dominant species importance a priori (Chapter 2). This approach was used to characterize plant community patterns and their relationship with environmental variables at Zion National Park, Utah, providing details and insights that were missed or obscure in previous vegetation characterizations of the area. I also examined community patterns at Zion National Park from a phylogenetic perspective (Chapter 3), under the assumption that species sharing common ancestry should be ecologically similar and hence be co-distributed in predictable ways. I predicted that related species would be aggregated into similar habitats because of phylogenetically-conserved niche affinities, yet segregated into different plots because of competitive interactions. However, I also suspected that these patterns would vary between different lineages and at different levels of the phylogenetic hierarchy (phylogenetic scales). I examined aggregation and segregation in relation to null models for each pair of species within genera and each sister pair of a genus-level vascular plant iii supertree. -
Phylogenetic Incongruence As a Signature of Past Events: Uncovering the Genomic Watermarks of Introgression and Gene Duplication
Phylogenetic Incongruence as a Signature of Past Events: Uncovering the Genomic Watermarks of Introgression and Gene Duplication Item Type text; Electronic Dissertation Authors Forsythe, Evan Sullivan Publisher The University of Arizona. Rights Copyright © is held by the author. Digital access to this material is made possible by the University Libraries, University of Arizona. Further transmission, reproduction or presentation (such as public display or performance) of protected items is prohibited except with permission of the author. Download date 04/10/2021 02:07:53 Link to Item http://hdl.handle.net/10150/628008 PHYLOGENETIC INCONGRUENCE AS A SIGNATURE OF PAST EVENTS: UNCOVERING THE GENOMIC WATERMARKS OF INTROGRESSION AND GENE DUPLICATION by Evan Sullivan Forsythe __________________________ Copyright © Evan Sullivan Forsythe 2018 A Dissertation Submitted to the Faculty of the SCHOOL OF PLANT SCIENCES In Partial Fulfillment of the Requirements For the Degree of DOCTOR OF PHILOSOPHY In the Graduate College THE UNIVERSITY OF ARIZONA 2018 STATEMENT BY AUTHOR This dissertation has been submitted in partial fulfillment of the requirements for an advanced degree at the University of Arizona and is deposited in the University Library to be made available to borrowers under rules of the Library. Brief quotations from this dissertation are allowable without special permission, provided that an accurate acknowledgement of the source is made. Requests for permission for extended quotation from or reproduction of this manuscript in whole or in part may be granted by the head of the major department or the Dean of the Graduate College when in his or her judgment the proposed use of the material is in the interests of scholarship. -
Time Lags in Plant Community Assembly After Forest Encroachment Into Mediterranean Grasslands: Drivers and Mechanisms
Time lags in plant community assembly after forest encroachment into Mediterranean grasslands: drivers and mechanisms Tesi doctoral Guillem Bagaria Morató per optar al grau de Doctor Dirigida per: Dr. Joan Pino Vilalta Dr. Ferran Rodà de Llanza Programa de doctorat en Ecologia Terrestre CREAF i Departament de Biologia Animal, Biologia Vegetal i Ecologia Facultat de Biociències Universitat Autònoma de Barcelona, març 2015 El Doctor Joan Pino Vilalta, professor de la Unitat d’Ecologia de la Universitat Autònoma de Barcelona i investigador del Centre de Recerca Ecològica i Aplicacions Forestals, El Doctor Ferran Rodà de Llanza, professor de la Unitat d’Ecologia de la Universitat Autònoma de Barcelona i investigador del Centre de Recerca Ecològica i Aplicacions Forestals, Certifiquen que: Aquesta tesi duta a terme per Guillem Bagaria Morató al Departament de Biologia Animal, Biologia Vegetal i Ecologia i al Centre de Recerca Ecològica i Aplicacions Forestals, i titulada Time lags in plant community assembly after forest encroachment into Mediterranean grasslands: drivers and mechanisms ha estat realitzada sota la seva direcció. Dr. Joan Pino Vilalta Dr. Ferran Rodà de Llanza Bellaterra (Cerdanyola del Vallès), març 2015 LO CEP I Al Cep, pare del vi, li digué la pacífica Olivera: —Acosta’t a mon tronch, de branca en branca enfila’t, y barreja als penjoys d’esmeragdes que jo duch los teus rahims de perles—. Y l’arbre de Noè a l’arbre de la pau fa de contesta: —Olivera que estàs prop de mi, ni tu faràs oli, ni jo faré vi. II Ta brancada és gentil, gentil y sempre verda, mes, ay de mi! No em dexa veure el sol, que ab sos raigs d’or més rossos m’enjoyella. -
The Vascular Plant Red Data List for Great Britain
Species Status No. 7 The Vascular Plant Red Data List for Great Britain Christine M. Cheffings and Lynne Farrell (Eds) T.D. Dines, R.A. Jones, S.J. Leach, D.R. McKean, D.A. Pearman, C.D. Preston, F.J. Rumsey, I.Taylor Further information on the JNCC Species Status project can be obtained from the Joint Nature Conservation Committee website at http://www.jncc.gov.uk/ Copyright JNCC 2005 ISSN 1473-0154 (Online) Membership of the Working Group Botanists from different organisations throughout Britain and N. Ireland were contacted in January 2003 and asked whether they would like to participate in the Working Group to produce a new Red List. The core Working Group, from the first meeting held in February 2003, consisted of botanists in Britain who had a good working knowledge of the British and Irish flora and could commit their time and effort towards the two-year project. Other botanists who had expressed an interest but who had limited time available were consulted on an appropriate basis. Chris Cheffings (Secretariat to group, Joint Nature Conservation Committee) Trevor Dines (Plantlife International) Lynne Farrell (Chair of group, Scottish Natural Heritage) Andy Jones (Countryside Council for Wales) Simon Leach (English Nature) Douglas McKean (Royal Botanic Garden Edinburgh) David Pearman (Botanical Society of the British Isles) Chris Preston (Biological Records Centre within the Centre for Ecology and Hydrology) Fred Rumsey (Natural History Museum) Ian Taylor (English Nature) This publication should be cited as: Cheffings, C.M. & Farrell, L. (Eds), Dines, T.D., Jones, R.A., Leach, S.J., McKean, D.R., Pearman, D.A., Preston, C.D., Rumsey, F.J., Taylor, I. -
Phylogenetic Distribution and Evolution of Mycorrhizas in Land Plants
Mycorrhiza (2006) 16: 299–363 DOI 10.1007/s00572-005-0033-6 REVIEW B. Wang . Y.-L. Qiu Phylogenetic distribution and evolution of mycorrhizas in land plants Received: 22 June 2005 / Accepted: 15 December 2005 / Published online: 6 May 2006 # Springer-Verlag 2006 Abstract A survey of 659 papers mostly published since plants (Pirozynski and Malloch 1975; Malloch et al. 1980; 1987 was conducted to compile a checklist of mycorrhizal Harley and Harley 1987; Trappe 1987; Selosse and Le Tacon occurrence among 3,617 species (263 families) of land 1998;Readetal.2000; Brundrett 2002). Since Nägeli first plants. A plant phylogeny was then used to map the my- described them in 1842 (see Koide and Mosse 2004), only a corrhizal information to examine evolutionary patterns. Sev- few major surveys have been conducted on their phyloge- eral findings from this survey enhance our understanding of netic distribution in various groups of land plants either by the roles of mycorrhizas in the origin and subsequent diver- retrieving information from literature or through direct ob- sification of land plants. First, 80 and 92% of surveyed land servation (Trappe 1987; Harley and Harley 1987;Newman plant species and families are mycorrhizal. Second, arbus- and Reddell 1987). Trappe (1987) gathered information on cular mycorrhiza (AM) is the predominant and ancestral type the presence and absence of mycorrhizas in 6,507 species of of mycorrhiza in land plants. Its occurrence in a vast majority angiosperms investigated in previous studies and mapped the of land plants and early-diverging lineages of liverworts phylogenetic distribution of mycorrhizas using the classifi- suggests that the origin of AM probably coincided with the cation system by Cronquist (1981). -
An Ecological Database of the British Flora
An Ecological Database of the British Flora submitted by Helen Jacqueline Peat for examination for the degree Doctor of Philosophy Department of Biology University of York October 1992 Abstract The design and compilation of a database containing ecological information on the British Flora is described. All native and naturalised species of the Gymnospermae and Angiospermae are included. Data on c.130 characteristics concerning habitat, distribution, morphology, physiology, life history and associated organisms, were collected by both literature searching and correspondence with plant ecologists. The evolutionary history of 25 of the characteristics was investigated by looking at the amount of variance at each taxonomic level. The variation in pollination mechanisms was found at high taxonomic levels suggesting these evolved, and became fixed, early on in the evolution of flowering plants. Chromosome number, annualness, dichogamy and self-fertilization showed most variance at low taxonomic levels, suggesting these characteristics have evolved more recently and may still be subject to change. Most of the characteristics, however, eg. presence of compound leaves, height and propagule length showed variance spread over several taxonomic levels suggesting evolution has occurred at different times in different lineages. The necessity of accounting for phylogeny when conducting comparative analyses is discussed, and two methods allowing this are outlined. Using these, the questions: 'Why does stomatal distribution differ between species?' and 'Why do different species have different degrees of mycorrhizal infection?' were investigated. Amphistomaty was found to be associated with species of unshaded habitats, those with small leaves and those with hairy leaves, and hypostomaty with woody species, larger leaves and glabrous leaves. -
Common Standards Monitoring Guidance for Vascular Plant Species
Common Standards Monitoring Guidance for Vascular Plant Species Version February 2004 ISSN 1743-8160 (online) Issue date: February 2004 Common Standards Monitoring guidance for vascular plant species 1 Introduction This chapter deals with Common Standards Monitoring (CSM) for vascular plants on designated sites, including SSSIs and SACs. It provides guidance on the identification of interest features, attributes, targets and methods of assessment. 2 Defining the interest feature 2.1 The vast majority of citations for biological A/SSSIs will name some plant species as occurring on the site. In most cases this serves a descriptive purpose, naming common plants which are distinctive in a particular habitat or community. It is essential to distinguish between this descriptive purpose and situations in which the named species constitute an interest feature in their own right. The guidance in this chapter deals only with those species which qualify as individual notified features or qualify in combination with other vascular plant species according to the Guidelines for selection of biological SSSIs (NCC, 1989), or according to similar guidelines that have been used to select ASSIs, or which appear on the Habitats and Species Directive Annex II. 2.2 Sites that have been notified for individual qualifying species are normally easy to identify by their citations. These species will be in the following categories: listed on Schedule 8 of the Wildlife and Countryside Act, Red Data Book (RDB) species, endemic species, non-endemic species threatened in Europe, declining and regionally rare species, microspecies and hybrids. Apart from Schedule 8 species, for which all sites should be selected, sites for these species should additionally have been selected for either population size or for being the only site in an Area of Search (AOS).