Coccidioidomycosis in New York State
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Coccidioides Immitis
24/08/2017 FUNGAL AGENTS CAUSING INFECTION OF THE LUNG Microbiology Lectures of the Respiratory Diseases Prepared by: Rizalinda Sjahril Microbiology Department Faculty of Medicine Hasanuddin University 2016 OVERVIEW OF CLINICAL MYCOLOGY . Among 150.000 fungi species only 100-150 are human pathogens 25 spp most common pathogens . Majority are saprophyticLiving on dead or decayed organic matter . Transmission Person to person (rare) SPORE INHALATION OR ENTERS THE TISSUE FROM TRAUMA Animal to person (rare) – usually in dermatophytosis 1 24/08/2017 OVERVIEW OF CLINICAL MYCOLOGY . Human is usually resistant to infection, unless: Immunoscompromised (HIV, DM) Serious underlying disease Corticosteroid/antimetabolite treatment . Predisposing factors: Long term intravenous cannulation Complex surgical procedures Prolonged/excessive antibacterial therapy OVERVIEW OF CLINICAL MYCOLOGY . Several fungi can cause a variety of infections: clinical manifestation and severity varies. True pathogens -- have the ability to cause infection in otherwise healthy individuals 2 24/08/2017 Opportunistic/deep mycoses which affect the respiratory system are: Cryptococcosis Aspergillosis Zygomycosis True pathogens are: Blastomycosis Seldom severe Treatment not required unless extensive tissue Coccidioidomycosis destruction compromising respiratory status Histoplasmosis Or extrapulmonary fungal dissemination Paracoccidioidomycosis COMMON PATHOGENS OBTAINED FROM SPECIMENS OF PATIENTS WITH RESPIRATORY DISEASE Fungi Common site of Mode of Infectious Clinical -
Phylogeny of the Genus Arachnomyces and Its Anamorphs and the Establishment of Arachnomycetales, a New Eurotiomycete Order in the Ascomycota
STUDIES IN MYCOLOGY 47: 131-139, 2002 Phylogeny of the genus Arachnomyces and its anamorphs and the establishment of Arachnomycetales, a new eurotiomycete order in the Ascomycota 1, 2 1* 3 2 C. F. C. Gibas , L. Sigler , R. C. Summerbell and R. S. Currah 1University of Alberta Microfungus Collection and Herbarium, Edmonton, Alberta, Canada; 2Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada; 3Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands Abstract: Arachnomyces is a genus of cleistothecial ascomycetes that has morphological similarities to the Onygenaceae and the Gymnoascaceae but is not accommodated well in either taxon. The phylogeny of the genus and its related anamorphs was studied using nuclear SSU rDNA gene sequences. Partial sequences were determined from ex-type cultures representing A. minimus, A. nodosetosus (anamorph Onychocola canadensis), A. kanei (anamorph O. kanei) and A. gracilis (anamorph Malbranchea sp.) and aligned together with published sequences of onygenalean and other ascomycetes. Phylogenetic analysis based on maximum parsimony showed that Arachnomyces is monophyletic, that it includes the hyphomycete Malbranchea sclerotica, and it forms a distinct lineage within the Eurotiomycetes. Based on molecular and morphological data, we propose the new order Arachnomycetales and a new family Arachnomycetaceae. All known anamorphs in this lineage are arthroconidial and have been placed either in Onychocola (A. nodosetosus, A. kanei) or in Malbranchea (A. gracilis). Onychocola is considered appropriate for disposition of the arthroconidial states of Arachnomyces and thus Malbranchea sclerotica and the unnamed anamorph of A. gracilis are redisposed as Onychocola sclerotica comb. nov. and O. gracilis sp. nov. Keywords: Eurotiomycetes, Arachnomycetales, Arachnomycetaceae, Arachnomyces, Onychocola, Malbranchea sclerotica, SSU rDNA, Ascomycota, phylogeny Introduction described from herbivore dung maintained in damp chambers (Singh & Mukerji, 1978; Mukerji, pers. -
Turning on Virulence: Mechanisms That Underpin the Morphologic Transition and Pathogenicity of Blastomyces
Virulence ISSN: 2150-5594 (Print) 2150-5608 (Online) Journal homepage: http://www.tandfonline.com/loi/kvir20 Turning on Virulence: Mechanisms that underpin the Morphologic Transition and Pathogenicity of Blastomyces Joseph A. McBride, Gregory M. Gauthier & Bruce S. Klein To cite this article: Joseph A. McBride, Gregory M. Gauthier & Bruce S. Klein (2018): Turning on Virulence: Mechanisms that underpin the Morphologic Transition and Pathogenicity of Blastomyces, Virulence, DOI: 10.1080/21505594.2018.1449506 To link to this article: https://doi.org/10.1080/21505594.2018.1449506 © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group© Joseph A. McBride, Gregory M. Gauthier and Bruce S. Klein Accepted author version posted online: 13 Mar 2018. Submit your article to this journal Article views: 15 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=kvir20 Publisher: Taylor & Francis Journal: Virulence DOI: https://doi.org/10.1080/21505594.2018.1449506 Turning on Virulence: Mechanisms that underpin the Morphologic Transition and Pathogenicity of Blastomyces Joseph A. McBride, MDa,b,d, Gregory M. Gauthier, MDa,d, and Bruce S. Klein, MDa,b,c a Division of Infectious Disease, Department of Medicine, University of Wisconsin School of Medicine and Public Health, 600 Highland Avenue, Madison, WI 53792, USA; b Division of Infectious Disease, Department of Pediatrics, University of Wisconsin School of Medicine and Public Health, 1675 Highland Avenue, Madison, WI 53792, USA; c Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, 1550 Linden Drive, Madison, WI 53706, USA. -
25 Chrysosporium
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Universidade do Minho: RepositoriUM 25 Chrysosporium Dongyou Liu and R.R.M. Paterson contents 25.1 Introduction ..................................................................................................................................................................... 197 25.1.1 Classification and Morphology ............................................................................................................................ 197 25.1.2 Clinical Features .................................................................................................................................................. 198 25.1.3 Diagnosis ............................................................................................................................................................. 199 25.2 Methods ........................................................................................................................................................................... 199 25.2.1 Sample Preparation .............................................................................................................................................. 199 25.2.2 Detection Procedures ........................................................................................................................................... 199 25.3 Conclusion .......................................................................................................................................................................200 -
Aphanoascus Fulvescens (Cooke) Apinis
The ultimate benchtool for diagnostics. Introduction Introduction of ATLAS Introduction CLINICAL FUNGI Introduction The ultimate benchtool for diagnostics Introduction Introduction Introduction Sample pages Introduction G.S. de Hoog, J. Guarro, J. Gené, S. Ahmed, Introduction A.M.S. Al-Hatmi, M.J. Figueras and R.G. Vitale 1 ATLAS of CLINICAL FUNGI The ultimate benchtool for diagnostics Overview of approximate effective application of comparative techniques in mycology Use Strain Variety Species Genus Family Order Class Keyref Cell wall Tax Kreger & Veenhuis (191) Pore Tax Moore (198) Karyology Tax Takeo & de Hoog (1991) Co- Tax Yamada et al. (198) Carbohydrate pattern Tax eijman & Golubev (198) Classical physiology Tax Yarrow (1998) API 32C Diag Guého et al. (1994b) API-Zym Diag Fromentin et al. (1981) mole% G+C Tax Guého et al. (1992b) SSU seq Tax Gargas et al. (1995) SSU-RFLP Tax Machouart et al. (2006) LSU Diag Kurtzman & Robnett (1998) ITS seq/RFLP Diag Lieckfeldt & Seifert (2000) IGS Epid Diaz & Fell (2000) Tubulin Tax Keeling et al. (2000) Actin Tax Donnelly et al. (1999) Chitin synthase Tax Karuppayil et al. (1996) Elongation factor Diag Helgason et al. (2003) NASBA Tax Compton (1991) nDNA homology Epid Voigt et al. (199) RCA Epid Barr et al. (199) LAMP Tax Guého et al. (199) MLPA Diag Sun et al. (2010) Isoenzymes (MLEE) Epid Pujol et al. (199) Maldi-tof Diag Schrödl et al. (2012) Fish Diag Rigby et al. (2002) RLB Diag Bergmans et al. (2008) PCR-ELISA Diag Beifuss et al. (2011) Secondary metabolites Tax/Diag Frisvad & Samson (2004) SSR Epid Karaoglu et al. -
Valley Fever a K a Coccidioidomycosis Coccidioidosis Coccidiodal Granuloma San Joaquin Valley Fever Desert Rheumatism Valley Bumps Cocci Cox C
2019 Lung Infection Symposium - Libke 10/26/2019 58 YO ♂ • 1974 PRESENTED WITH HEADACHE – DX = COCCI MENINGITIS WITH HYDROCEPHALUS – Rx = IV AMPHOTERICIN X 6 WKS – VP SHUNT – INTRACISTERNAL AMPHO B X 2.5 YRS (>200 PUNCTURES) • 1978 – 2011 VP SHUNT REVISIONS X 5 • 1974 – 2019 GAINFULLY EMPLOYED, RAISED FAMILY, RETIRED AND CALLS OCCASIONALLY TO SEE HOW I’M DOING. VALLEY FEVER A K A COCCIDIOIDOMYCOSIS COCCIDIOIDOSIS COCCIDIODAL GRANULOMA SAN JOAQUIN VALLEY FEVER DESERT RHEUMATISM VALLEY BUMPS COCCI COX C 1 2019 Lung Infection Symposium - Libke 10/26/2019 COCCIDIOIDOMYCOSIS • DISEASE FIRST DESCRIBED IN 1892 – POSADAS –ARGENTINA – RIXFORD & GILCHRIST - CALIFORNIA – INITIALLY THOUGHT PARASITE – RESEMBLED COCCIDIA “COCCIDIOIDES” – “IMMITIS” = NOT MINOR COCCIDIOIDOMYCOSIS • 1900 ORGANISM IDENTIFIED AS FUNGUS – OPHULS AND MOFFITT – ORGANISM CULTURED FROM TISSUES OF PATIENT – LIFE CYCLE DEFINED – FULFULLED KOCH’S POSTULATES 2 2019 Lung Infection Symposium - Libke 10/26/2019 COCCIDIOIDOMYCOSIS • 1932 ORGANISM IN SOIL SAMPLE FROM DELANO – UNDER BUNKHOUSE OF 4 PATIENTS – DISEASE FATAL • 1937 DICKSON & GIFFORD CONNECTED “VALLEY FEVER” TO C. IMMITIS – USUALLY SELF LIMITED – FREQUENTLY SEEN IN SAN JOAQUIN VALLEY – RESPIRATORY TRACT THE PORTAL OF ENTRY The usual cause for coccidioidomycosis in Arizona is C. immitis A. True B. False 3 2019 Lung Infection Symposium - Libke 10/26/2019 COCCIDIOIDAL SPECIES • COCCIDIOIDES IMMITIS – CALIFORNIA • COCCIDIOIDES POSADASII – NON-CALIFORNIA • ARIZONA, MEXICO • OVERLAP IN SAN DIEGO AREA THE MICROBIAL WORLD • PRIONS -
Coprophilous Fungal Community of Wild Rabbit in a Park of a Hospital (Chile): a Taxonomic Approach
Boletín Micológico Vol. 21 : 1 - 17 2006 COPROPHILOUS FUNGAL COMMUNITY OF WILD RABBIT IN A PARK OF A HOSPITAL (CHILE): A TAXONOMIC APPROACH (Comunidades fúngicas coprófilas de conejos silvestres en un parque de un Hospital (Chile): un enfoque taxonómico) Eduardo Piontelli, L, Rodrigo Cruz, C & M. Alicia Toro .S.M. Universidad de Valparaíso, Escuela de Medicina Cátedra de micología, Casilla 92 V Valparaíso, Chile. e-mail <eduardo.piontelli@ uv.cl > Key words: Coprophilous microfungi,wild rabbit, hospital zone, Chile. Palabras clave: Microhongos coprófilos, conejos silvestres, zona de hospital, Chile ABSTRACT RESUMEN During year 2005-through 2006 a study on copro- Durante los años 2005-2006 se efectuó un estudio philous fungal communities present in wild rabbit dung de las comunidades fúngicas coprófilos en excementos de was carried out in the park of a regional hospital (V conejos silvestres en un parque de un hospital regional Region, Chile), 21 samples in seven months under two (V Región, Chile), colectándose 21 muestras en 7 meses seasonable periods (cold and warm) being collected. en 2 períodos estacionales (fríos y cálidos). Un total de Sixty species and 44 genera as a total were recorded in 60 especies y 44 géneros fueron detectados en el período the sampling period, 46 species in warm periods and 39 de muestreo, 46 especies en los períodos cálidos y 39 en in the cold ones. Major groups were arranged as follows: los fríos. La distribución de los grandes grupos fue: Zygomycota (11,6 %), Ascomycota (50 %), associated Zygomycota(11,6 %), Ascomycota (50 %), géneros mitos- mitosporic genera (36,8 %) and Basidiomycota (1,6 %). -
Geophilic Dermatophytes and Other Keratinophilic Fungi in the Nests of Wetland Birds
ACTA MyCoLoGICA Vol. 46 (1): 83–107 2011 Geophilic dermatophytes and other keratinophilic fungi in the nests of wetland birds Teresa KoRnIŁŁoWICz-Kowalska1, IGnacy KIToWSKI2 and HELEnA IGLIK1 1Department of Environmental Microbiology, Mycological Laboratory University of Life Sciences in Lublin Leszczyńskiego 7, PL-20-069 Lublin, [email protected] 2Department of zoology, University of Life Sciences in Lublin, Akademicka 13 PL-20-950 Lublin, [email protected] Korniłłowicz-Kowalska T., Kitowski I., Iglik H.: Geophilic dermatophytes and other keratinophilic fungi in the nests of wetland birds. Acta Mycol. 46 (1): 83–107, 2011. The frequency and species diversity of keratinophilic fungi in 38 nests of nine species of wetland birds were examined. nine species of geophilic dermatophytes and 13 Chrysosporium species were recorded. Ch. keratinophilum, which together with its teleomorph (Aphanoascus fulvescens) represented 53% of the keratinolytic mycobiota of the nests, was the most frequently observed species. Chrysosporium tropicum, Trichophyton terrestre and Microsporum gypseum populations were less widespread. The distribution of individual populations was not uniform and depended on physical and chemical properties of the nests (humidity, pH). Key words: Ascomycota, mitosporic fungi, Chrysosporium, occurrence, distribution INTRODUCTION Geophilic dermatophytes and species representing the Chrysosporium group (an arbitrary term) related to them are ecologically classified as keratinophilic fungi. Ke- ratinophilic fungi colonise keratin matter (feathers, hair, etc., animal remains) in the soil, on soil surface and in other natural environments. They are keratinolytic fungi physiologically specialised in decomposing native keratin. They fully solubilise na- tive keratin (chicken feathers) used as the only source of carbon and energy in liquid cultures after 70 to 126 days of growth (20°C) (Korniłłowicz-Kowalska 1997). -
Phylogeny of Chrysosporia Infecting Reptiles: Proposal of the New Family Nannizziopsiaceae and Five New Species
CORE Metadata, citation and similar papers at core.ac.uk Provided byPersoonia Diposit Digital 31, de Documents2013: 86–100 de la UAB www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X669698 Phylogeny of chrysosporia infecting reptiles: proposal of the new family Nannizziopsiaceae and five new species A.M. Stchigel1, D.A. Sutton2, J.F. Cano-Lira1, F.J. Cabañes3, L. Abarca3, K. Tintelnot4, B.L. Wickes5, D. García1, J. Guarro1 Key words Abstract We have performed a phenotypic and phylogenetic study of a set of fungi, mostly of veterinary origin, morphologically similar to the Chrysosporium asexual morph of Nannizziopsis vriesii (Onygenales, Eurotiomycetidae, animal infections Eurotiomycetes, Ascomycota). The analysis of sequences of the D1-D2 domains of the 28S rDNA, including rep- ascomycetes resentatives of the different families of the Onygenales, revealed that N. vriesii and relatives form a distinct lineage Chrysosporium within that order, which is proposed as the new family Nannizziopsiaceae. The members of this family show the mycoses particular characteristic of causing skin infections in reptiles and producing hyaline, thin- and smooth-walled, small, Nannizziopsiaceae mostly sessile 1-celled conidia and colonies with a pungent skunk-like odour. The phenotypic and multigene study Nannizziopsis results, based on ribosomal ITS region, actin and β-tubulin sequences, demonstrated that some of the fungi included Onygenales in this study were different from the known species of Nannizziopsis and Chrysosporium and are described here as reptiles new. They are N. chlamydospora, N. draconii, N. arthrosporioides, N. pluriseptata and Chrysosporium longisporum. Nannizziopsis chlamydospora is distinguished by producing chlamydospores and by its ability to grow at 5 °C. -
Valley Fever (Coccidioidomycosis) Tutorial for Primary Care Professionals, Now in Its Second Printing
Valley Fever (Coccidioidomycosis) Tutorial for Primary Care Professionals Prepared by the VALLEY FEVER CENTER FOR EXCELLENCE The University of Arizona 2 TABLE OF CONTENTS Preface ....................................................................................... 4 SECTION 1 ................................................................................. 7 OVERVIEW OF COCCIDIOIDOMYCOSIS History .................................................................................... 8 Mycology ................................................................................ 8 Epidemiology ....................................................................... 10 Spectrum of disease ........................................................... 11 Current therapies ................................................................. 12 SECTION 2 ............................................................................... 13 THE IMPORTANCE OF VALLEY FEVER IN PRIMARY CARE Case reporting ..................................................................... 14 Value of early diagnosis ....................................................... 17 SECTION 3 ............................................................................... 19 PRIMARY CARE MANAGEMENT OF COCCIDIOIDOMYCOSIS C onsider the diagnosis ........................................................ 20 O rder the right tests ............................................................. 23 C heck for risk factors .......................................................... 29 C heck for complications -
Complete Issue
J. Fernholz and Q.E. Phelps – Influence of PIT tags on growth and survival of banded sculpin (Cottus carolinae): implications for endangered grotto sculpin (Cottus specus). Journal of Cave and Karst Studies, v. 78, no. 3, p. 139–143. DOI: 10.4311/2015LSC0145 INFLUENCE OF PIT TAGS ON GROWTH AND SURVIVAL OF BANDED SCULPIN (COTTUS CAROLINAE): IMPLICATIONS FOR ENDANGERED GROTTO SCULPIN (COTTUS SPECUS) 1 2 JACOB FERNHOLZ * AND QUINTON E. PHELPS Abstract: To make appropriate restoration decisions, fisheries scientists must be knowledgeable about life history, population dynamics, and ecological role of a species of interest. However, acquisition of such information is considerably more challenging for species with low abundance and that occupy difficult to sample habitats. One such species that inhabits areas that are difficult to sample is the recently listed endangered, cave-dwelling grotto sculpin, Cottus specus. To understand more about the grotto sculpin’s ecological function and quantify its population demographics, a mark-recapture study is warranted. However, the effects of PIT tagging on grotto sculpin are unknown, so a passive integrated transponder (PIT) tagging study was performed. Banded sculpin, Cottus carolinae, were used as a surrogate for grotto sculpin due to genetic and morphological similarities. Banded sculpin were implanted with 8.3 3 1.4 mm and 12.0 3 2.15 mm PIT tags to determine tag retention rates, growth, and mortality. Our results suggest sculpin species of the genus Cottus implanted with 8.3 3 1.4 mm tags exhibited higher growth, survival, and tag retention rates than those implanted with 12.0 3 2.15 mm tags. -
Fungal Serology Update – Test Algorithms and Methodologies
LABSTRACT – October 2019 Fungal Serology Update – Test algorithms and methodologies Audience Health care providers and laboratories involved in submission of specimens for fungal serology testing. Overview Beginning October 2019, the fungal serology testing algorithms and methodologies for Aspergillus, Histoplasma capsulatum, Blastomyces dermatitidis and Coccidiodies immitis used at Public Health Ontario have changed. All assays are now Health Canada licensed. Complement fixation (CF) assays have been discontinued. Summary of fungal serology assay methods now in use at PHO Laboratory Serologic Test Method used at PHO Analyte Detected Ordered Aspergillus Enzyme Immunoassay (EIA) IgG antibodies Histoplasma Immunodiffusion M and H band precipitins Blastomyces Immunodiffusion A band precipitins IgM (against TP antigens) and Screen, EIA IgG (against CF antigens) Coccidioides IDTP and IDCF band Confirmation, Immunodiffusion precipitins Page 1 of 4 Fungal Serology Update – Test algorithms and methodologies LAB-SD-134-000 Background information Please note, culture remains the gold standard for the diagnosis of most invasive fungal infections. However, fungal infections can be challenging to diagnose as symptoms are often non-specific and can mimic bacterial, viral, other fungal infections or malignancy. Results of fungal serological tests can be used to aid in the diagnosis and/or management of specific fungal infections and fungal allergies. Aspergillus species are ubiquitous environmental moulds which people inhale each day. While invasive disease is typically restricted to immunocompromised individuals, immunocompetent individuals can have certain allergic manifestations, or develop chronic pulmonary aspergillosis (CPA). Histoplasma capsulatum, Blastomyces dermatitidis and Coccidioides immitis are endemic, dimorphic fungi which can infect otherwise healthy individuals. Most infected individuals are exposed by inhaling fungal spores from the environment and present with initial clinical symptoms of respiratory illness.