Do We Have a Thermotrophic Feature? James Weifu Lee
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Light-Induced Psba Translation in Plants Is Triggered by Photosystem II Damage Via an Assembly-Linked Autoregulatory Circuit
Light-induced psbA translation in plants is triggered by photosystem II damage via an assembly-linked autoregulatory circuit Prakitchai Chotewutmontria and Alice Barkana,1 aInstitute of Molecular Biology, University of Oregon, Eugene, OR 97403 Edited by Krishna K. Niyogi, University of California, Berkeley, CA, and approved July 22, 2020 (received for review April 26, 2020) The D1 reaction center protein of photosystem II (PSII) is subject to mRNA to provide D1 for PSII repair remain obscure (13, 14). light-induced damage. Degradation of damaged D1 and its re- The consensus view in recent years has been that psbA transla- placement by nascent D1 are at the heart of a PSII repair cycle, tion for PSII repair is regulated at the elongation step (7, 15–17), without which photosynthesis is inhibited. In mature plant chloro- a view that arises primarily from experiments with the green alga plasts, light stimulates the recruitment of ribosomes specifically to Chlamydomonas reinhardtii (Chlamydomonas) (18). However, we psbA mRNA to provide nascent D1 for PSII repair and also triggers showed recently that regulated translation initiation makes a a global increase in translation elongation rate. The light-induced large contribution in plants (19). These experiments used ribo- signals that initiate these responses are unclear. We present action some profiling (ribo-seq) to monitor ribosome occupancy on spectrum and genetic data indicating that the light-induced re- cruitment of ribosomes to psbA mRNA is triggered by D1 photo- chloroplast open reading frames (ORFs) in maize and Arabi- damage, whereas the global stimulation of translation elongation dopsis upon shifting seedlings harboring mature chloroplasts is triggered by photosynthetic electron transport. -
Photosynthetic Phosphorylation Above and Below 00C by David 0
VOL. 48, 1962 BIOCHEMISTRY: HALL AND ARNON 833 10 De Robertis, E., J. Biophy8. Biochem. Cytol., 2, 319 (1956). 11 Eakin, R. M., and J. A. Westfall, ibid., 8, 483 (1960). 12 Eakin, R. M., these PROCEEDINGS, 47, 1084 (1961). 13 Wolken, J. J., in The Structure of the Eye, ed. G. K. Smelser (New York: Academic Press, 1961). 14 Wald, G., ibid. 16 Eakin, R. M., and J. A. Westfall, Embryologia, 6, 84 (1961). 16 Sj6strand, F. S., in The Structure of the Eye, ed. G. K. Smelser (New York: Academic Press, 1961). 17 Miller, W. H., in The Cell, ed. J. Brachet and A. E. Mirsky (New York: Academic Press, 1960), part IV. 18 Miller, W. H., J. Biophys. Biochem. Cytol., 4, 227 (1958). 19 Hesse, R., Z. wiss. Zool., 61, 393 (1896). 20 Bradke, D. L., personal communication. 21 Wolken, J. J., Ann. N. Y. Acad. Sci., 74, 164 (1958). 22 Rohlich, P., and L. J. Torok, Z. wiss. Zool., 54, 362 (1961). 28 Eakin, R. M., and J. A. Westfall, J. Ultrastr. Res. (in press). 24 Franz, V., Jena. Z. Naturwiss., 59, 401 (1923). PHOTOSYNTHETIC PHOSPHORYLATION ABOVE AND BELOW 00C BY DAVID 0. HALL* AND DANIEL I. ARNONt DEPARTMENT OF CELL PHYSIOLOGY, UNIVERSITY OF CALIFORNIA, BERKELEY Read before the Academy, April 25, 1962 CO2 assimilation in photosynthesis consists of a series of dark enzymatic reactions that are driven solely by adenosine triphosphate and reduced pyridine nucleotide. 1-4 The same reactions are now known to operate in nonphotosynthetic cells.5-"3 It follows, therefore, that the distinction between carbon assimilation in photosyn- thetic and nonphotosynthetic cells lies in the manner in which ATP14 and PNH214 are formed. -
Bacterial Photophosphorylation: Regulation by Redox Balance* by Subir K
VOL. 49, 1963 BIOCHEMISTRY: BOSE AND GEST 337 12 Hanson, L. A., and I. Berggird, Clin. Chim. Acta, 7, 828 (1962). 13 Stevenson, G. T., J. Clin. Invest., 41, 1190 (1962). 14 Burtin, P., L. Hartmann, R. Fauvert, and P. Grabar, Rev. franc. etudes clin. et biol., 1, 17 (1956). 15 Korngold, L., and R. Lipari, Cancer, 9, 262 (1956). 16Lowry, 0. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall, J. Biol. Chem., 193, 265 (1951). 17 Muller-Eberhard, H. J., Scand. J. Clin. and Lab. Invest., 12, 33 (1960). 18 Bergg&rd, I., Arkiv Kemi, 18, 291 (1962). 19 BerggArd, I., Arkiv Kemi, 18, 315 (1962). 20 Flodin, P., Dextran Gels and Their Application in Gel Filtration (Uppsala: Pharmacia, 1962). 21 Dische, Z., and L. B. Shettles, J. Biol. Chem., 175, 595 (1948). 22 Kunkel, H. G., and R. Trautman, in Electrophoresis, ed. M. Bier (New York: Academic Press, 1959), p. 225. 23Fleischman, J. B., R. H. Pain, and R. R. Porter, Arch. Biochem. Biophys., Suppl. 1, 174 (1962). 24 Porter, R. R., Biochem. J., 73, 119 (1959). 25 Edelman, G. M., J. F. Heremans, M.-Th. Heremans, and H. G. Kunkel, J. Exptl. Med., 112, 203 (1960). 26 Scheidegger, J. J., Intern. Arch. Allergy Appl. Immunol., 7, 103 (1955). 27 Yphantis, D. A., American Chemical Society, 140th meeting, Chicago, Abstracts of Papers, 1961, p. ic. 28 Gally, J. A. and G. M. Edelman, Biochim. Biophys. Acta, 60, 499 (1962). 29 Webb, T., B. Rose, and A. H. Sehon, Can. J. Biochem. Physiol., 36, 1159 (1958). -
Bioenergetic Abnormalities in Schizophrenia
Bioenergetic abnormalities in schizophrenia A dissertation submitted to the Graduate School of the University of Cincinnati in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate Program in Neuroscience of the College of Medicine by Courtney René Sullivan B.S. University of Pittsburgh, 2013 Dissertation Committee: Mark Baccei, Ph.D. (chair) Robert McCullumsmith, M.D., Ph.D. (advisor) Michael Lieberman, Ph.D. Temugin Berta, Ph.D. Robert McNamara, Ph.D. ABSTRACT Schizophrenia is a devastating illness that affects over 2 million people in the U.S. and displays a wide range of psychotic symptoms, as well as cognitive deficits and profound negative symptoms that are often treatment resistant. Cognition is intimately related to synaptic function, which relies on the ability of cells to obtain adequate amounts of energy. Studies have shown that disrupting bioenergetic pathways affects working memory and other cognitive behaviors. Thus, investigating bioenergetic function in schizophrenia could provide important insights into treatments or prevention of cognitive disorders. There is accumulating evidence of bioenergetic dysfunction in chronic schizophrenia, including deficits in energy storage and usage in the brain. However, it is unknown if glycolytic pathways are disrupted in this illness. This dissertation employs a novel reverse translational approach to explore glycolytic pathways in schizophrenia, effectively combining human postmortem studies with bioinformatic analyses to identify possible treatment strategies, which we then examine in an animal model. To begin, we characterized a major pathway supplying energy to neurons (the lactate shuttle) in the dorsolateral prefrontal cortex (DLPFC) in chronic schizophrenia. We found a significant decrease in the activity of two key glycolytic enzymes in schizophrenia (hexokinase, HXK and phosphofructokinase, PFK), suggesting a decrease in the capacity to generate bioenergetic intermediates through glycolysis in this illness. -
Photosynthesis
ENVIRONMENTAL PLANT PHYSIOLOGY SESSION 3 Photosynthesis An understanding of the biochemical processes of photosynthesis is needed to allow us to understand how plants respond to changing environmental conditions. This session looks at the details of the physiology and considers how plants can adapt these processes. If you studied the foundation degree with Myerscough previously you will recognise that much of these session notes are a very similar to those provided for the Plant Biology Module. The difference is not in the content but in the level of understanding required! Page Introduction to Photosynthesis 2 First catch your light! 3 The Light Dependent Reaction 7 The Light Independent Reaction 11 Photosynthesis and the Environment 12 Alternative Carbon Fixation Strategies 16 Further Reading 19 LEARNING OUTCOMES You need to be able to describe the biochemical basis of photosynthesis including: • Describing the role of chloroplasts and chlorophyll • Describing the steps of the light reaction and stating its products • Describing the Calvin cycle or light independent reaction and stating its products • Describing the role and position of the electron transport chain • Identify the effects of environmental factors on the rate of photosynthesis and explain how these relate to your field of study • Describe adaptations used by plants to continue photosynthesis in conditions of environmental stress such as hot arid conditions or shade conditions 1 Introduction to Photosynthesis The sun is the main source of energy to all living things. Light energy from the sun is converted to the chemical energy of organic molecules by green plants by a complicated pathway of reactions called photosynthesis. -
Biochemical Fossils of the Ancient Transition from Geoenergetics to Bioenergetics in Prokaryotic One Carbon Compound Metabolism☆
BBABIO-47248; No. of pages: 18; 4C: 4, 6, 7, 9 Biochimica et Biophysica Acta xxx (2014) xxx–xxx Contents lists available at ScienceDirect Biochimica et Biophysica Acta journal homepage: www.elsevier.com/locate/bbabio Biochemical fossils of the ancient transition from geoenergetics to bioenergetics in prokaryotic one carbon compound metabolism☆ Filipa L. Sousa, William F. Martin ⁎ Institute for Molecular Evolution,University of Düsseldorf, 40225 Düsseldorf, Germany article info abstract Article history: The deep dichotomy of archaea and bacteria is evident in many basic traits including ribosomal protein compo- Received 26 October 2013 sition, membrane lipid synthesis, cell wall constituents, and flagellar composition. Here we explore that deep di- Received in revised form 31 January 2014 chotomy further by examining the distribution of genes for the synthesis of the central carriers of one carbon Accepted 3 February 2014 units, tetrahydrofolate (H F) and tetrahydromethanopterin (H MPT), in bacteria and archaea. The enzymes un- Available online xxxx 4 4 derlying those distinct biosynthetic routes are broadly unrelated across the bacterial–archaeal divide, indicating Keywords: that the corresponding pathways arose independently. That deep divergence in one carbon metabolism is mir- Pterins rored in the structurally unrelated enzymes and different organic cofactors that methanogens (archaea) and Hydrothermal vents acetogens (bacteria) use to perform methyl synthesis in their H4F- and H4MPT-dependent versions, respectively, Origin of life of the acetyl-CoA pathway. By contrast, acetyl synthesis in the acetyl-CoA pathway — from a methyl group, CO2 Methanogens and reduced ferredoxin — is simpler, uniform and conserved across acetogens and methanogens, and involves Acetogens only transition metals as catalysts. -
Quantum Efficiency of Photosynthetic Energy Conversion (Photosynthesis/Photophosphorylation/Ferredoxin) RICHARD K
Proc. Natl. Acad. Sd. USA Vol. 74, No. 8, pp. 3377-81, August 1977 Biophysics Quantum efficiency of photosynthetic energy conversion (photosynthesis/photophosphorylation/ferredoxin) RICHARD K. CHAIN AND DANIEL I. ARNON Department of Cell Physiology, University of California, Berkeley, Berkeley, California 94720 Contributed by Daniel I. Arnon, June 7,1977 ABSTRACT The quantum efficiency of photosynthetic with cyclic and noncyclic photophosphorylation and a "dark," energy conversion was investigated in isolated spinach chlo- enzymatic phase concerned with the assimilation of CO2 (8). roplasts by measurements of the quantum requirements of ATP has established that the formation by cyclic and noncyclic photophosphorylation cata- Fractionation of chloroplasts (9) light lyzed by ferredoxin. ATP formation had a requirement of about phase is localized in the membrane fraction (grana) that is 2 quanta per 1 ATP at 715 nm (corresponding to a requirement separable from the soluble stroma fraction which contains the of 1 quantum per electron) and a requirement of 4 quanta per enzymes of CO2 assimilation (10). Thus, in isolated and frac- ATP (corresponding to a requirement of 2 quanta per electron) tionated chloroplasts, investigations of photosynthetic quantum at 554 nm. When cyclic and noncyclic photophosphorylation efficiency can be focused solely on cyclic and noncyclic pho-. were operating concurrently at 554 nm, a total of about 12 account the conversion of quanta was required to generate the two NADPH and three ATP tophosphorylation, which jointly for needed for the assimilation of one CO2 to the level of glu- photon energy into chemical energy without the subsequent cose. or concurrent reactions of biosynthesis and respiration that cannot be avoided in whole cells. -
Consequences of the Structure of the Cytochrome B6 F Complex for Its Charge Transfer Pathways ⁎ William A
Biochimica et Biophysica Acta 1757 (2006) 339–345 http://www.elsevier.com/locate/bba Review Consequences of the structure of the cytochrome b6 f complex for its charge transfer pathways ⁎ William A. Cramer , Huamin Zhang Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA Received 17 January 2006; received in revised form 30 March 2006; accepted 24 April 2006 Available online 4 May 2006 Abstract At least two features of the crystal structures of the cytochrome b6 f complex from the thermophilic cyanobacterium, Mastigocladus laminosus and a green alga, Chlamydomonas reinhardtii, have implications for the pathways and mechanism of charge (electron/proton) transfer in the complex: (i) The narrow 11×12 Å portal between the p-side of the quinone exchange cavity and p-side plastoquinone/quinol binding niche, through which all Q/QH2 must pass, is smaller in the b6 f than in the bc1 complex because of its partial occlusion by the phytyl chain of the one bound chlorophyll a molecule in the b6 f complex. Thus, the pathway for trans-membrane passage of the lipophilic quinone is even more labyrinthine in the b6 f than in the bc1 complex. (ii) A unique covalently bound heme, heme cn, in close proximity to the n-side b heme, is present in the b6 f complex. The b6 f structure implies that a Q cycle mechanism must be modified to include heme cn as an intermediate between heme bn and plastoquinone bound at a different site than in the bc1 complex. In addition, it is likely that the heme bn–cn couple participates in photosytem + I-linked cyclic electron transport that requires ferredoxin and the ferredoxin: NADP reductase. -
Chapter 19 Photophosphorylation
Chapter 19 Part 3 Photophosphorylation Learning Goals: To Know 1. How energy of sunlight creates charge separation in the photosynthetic reaction complex and exciton transfer. 2. How electron transport is accompanied by the directional transport of protons across the membrane against their concentration gradient 3. Similarities and differences between plant-algal photosystems and bacterial photosystems. 4. How the electrochemical proton gradient drives synthesis of ATP by coupling the flow of protons via ATP synthase to conformational changes that favor formation of ATP in the active site 5. Roles of rhodopsins. Primary Production – Solar Energy Conversion Chloroplasts How do Photosynthetic Bacteria Fit in Here? Hill Reaction (driven by light) in Photophosphorylation 2 H2O + 2 A 2 AH2 + O2 “A” in Biological Systems = NADP+ so the Hill Reaction is: + + 2 H2O + 2 NADP 2 NADPH + 2H + O2 What Robert Hill in 1937 Actually Measured Was: The reduction of DCIP: going from blue to colorless. Electromagnetic Spectrum What is an Einstein? Light Energy Planck-Einstein Equation: E = h ν E = energy of a photon h = Planck’s Constant = 6.6 x 10-34 J.s v = vibration frequency ( of the wavelength of light; vibrational frequency increases with a decrease in wavelength ) In the text, E = hc/λ c/λ = v so red light, λ = 700 nm, c = 3x108m/s So that one red photon E = 2.83 x 10-19 J For an Einstein (a mole of photons) E = 168 kJ/einstein Chlorophyll a What is with the PINK ??? Phycobilins Carotenoids Photopigment Absorption Spectrum Chlorophyll Types Noon, Nov 18th: Surface Sun Light Spectra OE Pond Where is the Visible and Infra-red light ? Which one gets to the bottom? Noon, Nov 18th: Bottom The y-axis is in units of (einsteins/s)/m2 at each wavelength. -
Revolutionizing Neurodegenerative Disease Using Bioenergetic Nanotherapeutics to Improve Patients‘ Lives
CLENE INC. ANNUAL REPORT 2020 REPORT ANNUAL REVOLUTIONIZING NEURODEGENERATIVE DISEASE USING BIOENERGETIC NANOTHERAPEUTICS TO IMPROVE PATIENTS‘ LIVES ANNUAL REPORT 2020 Breakthrough Needed for Patients Eective treatment of patients with neurodegenerative disorders requires a therapeutic breakthrough. The World Health Organization predicts diseases of neurodegeneration will become the second-most prevalent cause of death within the next 20 years1. Bioenergetic Opportunity Bioenergetic failure underlies the pathophysiology of many neurodegenerative diseases2. However, rescuing failing bioenergetic systems in these diseases has historically been extremely challenging3. Bioenergetic Nanotherapeutics Clene® is rapidly advancing a pipeline of bioenergetic nanotherapeutics, the first of those is CNM-Au8, designed to enhance naturally occurring cellular metabolism with the goal of reversing neurodegeneration. This new class of drugs called bioenergetic nanocatalysts has been created to accelerate neurorepair, improve neuroprotection, and enhance remyelination4. Innovative Platform The innovative platform is an electrochemistry approach to growing clean-surfaced, metallic nanocrystal therapeutics. The nanotherapeutic CNM-Au8 is designed to optimize cellular health and repair through energy enhancing bioenergetic catalysis. Using pure, clean-surfaced gold nanocrystals, we are able to amplify healthy, intracellular reactions necessary for cells to function and defend CLENE themselves from disease4. INNOVATE PROTECT REPAIR BIOENERGETIC NANOTHERAPEUTICS CNM-Au8 Clene Team Clene carefully engineered its lead drug Behind every innovative platform is a candidate, CNM-Au8, a bioenergetic team of inventive minds. Clene nanocatalyst which enhances critical enlisted a leadership team of intracellular bioenergetic reactions seasoned industry veterans united by necessary for repairing and reversing their appetite for innovation and neuronal damage. Orally administered, committed to advancing the CNM-Au8 has demonstrated safety in Phase company’s pipeline rapidly. -
Effects of Low Concentrations of Ammonia and Methylamine
Photophosphorylation by Chloroplasts: Effects of Low Concentrations of Ammonia and Methylamine Christoph Giersch Botanisches Institut der Universität Düsseldorf, Universitätsstr. 1, D-4000 Düsseldorf, Bundesrepublik Deutschland Z. Naturforsch. 37 c, 242-250 (1982); received December 23, 1981 Photophosphorylation, Uncoupling, Amines, Proton Motive Force, Chloroplasts, Chemiosmotic Theory Intact chloroplasts exposed to hypotonic assay conditions are capable of photophosphorylating exogenous ADP. The rate of phosphorylation by these unbroken plastids is increased by 10—50% upon the addition of low concentrations (< mM) of N H 3 or CH3NH 2. Stimulation of phosphory lation is abolished by washing chloroplasts with MgCl2. Evidence is presented that washing re moves a factor responsible for amine-induced increase of A TP production and that this factor is associated with the thylakoid membrane. Addition of CH3NH 2 increased the proton permeability of the thylakoid membrane of unbroken and washed chloroplasts during the light/dark transition. Hence, differences of the membrane permeability for protons between the two preparations seem not to be responsible for an increase of ATP production upon the addition of amines. Stimulation of photophosphorylation by methylamine is observed even at light itensities which do not saturate the proton motive force, which in turn is reduced upon the addition of the uncoupler. Apparently, phosphorylation can be stimulated, although the limiting driving force is diminished. It is con cluded that phosphorylation by unbroken chloroplasts under low light illumination is limited kinetically, not energetically. Consequences of these findings for observation made with intact chloroplasts are discussed. Introduction creased pmf in the presence of low amine * concen trations although the rate of steady-state light-de The chemiosmotic concept holds the trans pendent ATP production is increased [4]. -
Estrogen: a Master Regulator of Bioenergetic Systems in the Brain and Body ⇑ Jamaica R
Frontiers in Neuroendocrinology 35 (2014) 8–30 Contents lists available at ScienceDirect Frontiers in Neuroendocrinology journal homepage: www.elsevier.com/locate/yfrne Review Estrogen: A master regulator of bioenergetic systems in the brain and body ⇑ Jamaica R. Rettberg a, Jia Yao b, Roberta Diaz Brinton a,b,c, a Neuroscience Department, University of Southern California, Los Angeles, CA 90033, United States b Department of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, Los Angeles, CA 90033, United States c Department of Neurology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, United States article info abstract Article history: Estrogen is a fundamental regulator of the metabolic system of the female brain and body. Within the Available online 29 August 2013 brain, estrogen regulates glucose transport, aerobic glycolysis, and mitochondrial function to generate ATP. In the body, estrogen protects against adiposity, insulin resistance, and type II diabetes, and regu- Keywords: lates energy intake and expenditure. During menopause, decline in circulating estrogen is coincident with Adipokine decline in brain bioenergetics and shift towards a metabolically compromised phenotype. Compensatory Adipose tissue bioenergetic adaptations, or lack thereof, to estrogen loss could determine risk of late-onset Alzheimer’s Aging disease. Estrogen coordinates brain and body metabolism, such that peripheral metabolic state can indi- Alzheimer’s disease cate bioenergetic status of the brain. By generating biomarker profiles that encompass peripheral meta- Biomarker Insulin bolic changes occurring with menopause, individual risk profiles for decreased brain bioenergetics and Menopause cognitive decline can be created. Biomarker profiles could identify women at risk while also serving as Metabolism indicators of efficacy of hormone therapy or other preventative interventions.