Porting IRIX® Applications to SGI® Altix® Platforms: SGI Propack™ for Linux®
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Porting IRIX® Applications to SGI® Altix® Platforms: SGI ProPack™ for Linux® 007-4674-001 CONTRIBUTORS WrittenbyStevenLevine Illustrated by Chrystie Danzer Production by Karen Jacobson Engineering contributions by George Pirocanac COPYRIGHT © 2004, Silicon Graphics, Inc. All rights reserved; provided portions may be copyright in third parties, as indicated elsewhere herein. No permission is granted to copy, distribute, or create derivative works from the contents of this electronic documentation in any manner, in whole or in part, without the prior written permission of Silicon Graphics, Inc. LIMITED RIGHTS LEGEND The software described in this document is “commercial computer software” provided with restricted rights (except as to included open/free source) as specified in the FAR 52.227-19 and/or the DFAR 227.7202, or successive sections. Use beyond license provisions is a violation of worldwide intellectual property laws, treaties and conventions. This document is provided with limited rights as defined in 52.227-14. TRADEMARKS AND ATTRIBUTIONS Silicon Graphics, SGI, the SGI logo, Altix, IRIX, Origin, Onyx, Onyx2, and XFS are registered trademarks and CaseVision, NUMAflex, NUMAlink, OpenMP, Performance Co-Pilot, ProDev, SGI Advanced Linux, SGI ProPack, SGIconsole, and SHMEM are trademarks of Silicon Graphics, Inc., in the United States and/or other countries worldwide. SGI Advanced Linux Environment 3.0 is based on Red Hat Enterprise Linux AS 3.0, but is not sponsored by or endorsed by Red Hat, Inc. in any way. Cray is a registered trademark of Cray, Inc. FLEXlm is a registered trademark of Macrovision Corporation. Java is a registered trademark of Sun Microsystems, Inc. in the United States and/or other countries. Linux is a registered trademark of Linus Torvalds, used with permission by Silicon Graphics, Inc. MIPS is a registered trademark and MIPSPro is a trademark of MIPS Technology, Inc., used under license by Silicon Graphics, Inc., in the United States and/or other countries worldwide. POSIX is a registered trademark of the Institute of Electrical and Electronic Engineers, Inc. (IEEE). Red Hat is a registered trademark and Red Hat Linux Advanced Server 3.0 and RPM are trademarks of Red Hat, Inc. TotalView is a trademark of Etnus, LLC. VTune is a trademark and Intel and Itanium are registered trademarks of Intel Corporation or its subsidiaries in the United States and other countries. All other trademarks are the property of their respective owners. Record of Revision Version Description 001 April 2004 Original publication 007-4674-001 iii Contents Figures ..........................ix Tables ..........................xi Examples .........................xiii About This Guide.......................xv RelatedPublications......................xv ObtainingPublications.....................xv Conventions........................xvi ReaderComments.......................xvi 1. Porting Overview .......................1 2. Endian Order ........................5 ACaseofEndianness......................5 Examples.........................6 3. 64-bit ABI Porting Issues ....................9 32-bitand64-bitDifferences....................9 WritingCCodePortableto64-BitPlatforms...............11 WritingFortranCodePortableto64-BitPlatforms.............13 ExamplesofFortranPortabilityIssues.................13 4. Compiler and Development Tools ..................17 DevelopmentToolChain.....................17 Editors..........................18 Compilers.........................18 IntelCompilers......................18 GNUCompilers......................20 007-4674-001 v Contents StandardsSupport.......................21 CLanguageStandardSupport..................21 C++LanguageStandardSupport.................22 FortranLanguageStandardSupport................22 OpenMPStandardSupport...................24 CompilerOptions.......................24 CompilerDirectives......................27 Assemblers.........................28 Linker..........................28 5. Additional Development Tools ...................29 ArchiverandOtherObjectfileTools..................29 Debuggers.........................31 AltixCommandLineDebuggers.................31 GUIDebuggersonAltix.....................33 Timing..........................34 Clock_gettime()andClock_getres().................35 MPITimingRoutines.....................37 PerformanceAnalysisTools....................38 PerformanceToolsonAltix...................39 VTune.........................39 gprof.........................40 pfmon.........................40 profile.pl........................41 SGIHistx........................41 6. Message Passing on IRIX and Linux .................45 CompilingMPIProgramsonLinux..................45 SHMEMProgramLaunch.....................45 NUMAPlacement.......................45 dplaceCommand.......................46 PerformanceTuningTools....................46 MPTReleaseDocumentation....................46 PerformanceImpactofPartitioning..................47 vi 007-4674-001 Contents SoftwareModulesDifferences...................47 System-SpecificMPTFeatures...................48 7. POSIX Threads (pthreads) Implementations ...............49 ImplementationDifferences....................50 DifferencesinCancellation....................51 DifferencesinMutexImplementations.................53 ConditionVariables......................54 Read-WriteLocks.......................54 Signals..........................55 SchedulingPthreads......................56 Scope.........................56 Policy.........................56 Priority.........................57 EnvironmentVariables.....................57 SummaryofDifferencesinSupportedFeatures..............58 8. Miscellaneous Porting Concerns ..................61 I/OControls........................61 ATTKornShellvs.PublicDomainKornShell...............63 SerialPortDevices.......................64 Security..........................65 9. Frequently Asked Questions ...................67 A. Application Programming Interface (API) Differences: libc ..........71 Index ..........................83 007-4674-001 vii Figures Figure 1-1 HardwareandSoftwarePlatform..........1 Figure 5-1 Typical ddd display..............33 007-4674-001 ix Tables Table 1-1 PlatformComparison..............2 Table 1-2 DevelopmentToolsComparison...........2 Table 1-3 DevelopmentLibrariesComparison..........3 Table 1-4 PlatformLayerPortingIssues............3 Table 3-1 Cdatatypesizesin32-bitand64-bitABI........9 Table 4-1 DevelopmentProcess..............17 Table 4-2 IntelCompilerVersions.............18 Table 4-3 CLanguageStandardSupportSummary........22 Table 4-4 FortranLanguageStandardSupportSummary.......23 Table 4-5 Common Compiler Flags on IRIX and Linux (Both Intel and GNU) . 24 Table 4-6 Similar Compiler Flags on MIPSpro and Intel compilers . 25 Table 4-7 ConflictingCompilerOptions...........26 Table 4-8 Intel-onlyFlags................26 Table 4-9 CompilerDirectivesforTuningandDebugging......27 Table 5-1 DevelopmentProcess..............29 Table 5-2 IRIXandLinuxCommonArchiverOptions.......30 Table 5-3 Additional Object File Tools ............31 Table 5-4 Command Line Debugger Commonly Used Commands . 32 Table 5-5 profile.plFlags................41 Table 6-1 System-SpecificMPTfeatures............48 Table 7-1 IRIX6.5vs.LinuxPthreadFeatureComparison......58 Table 8-1 IRIXandLinuxdevicenamingexamples........64 Table 8-2 IRIXandLinuxSecurityFeatures...........65 007-4674-001 xi Examples Example 2-1 CProgramIllustratingEndianOrder.........6 Example 2-2 FortranProgramIllustratingEndianOrder........7 Example 3-1 ChangingIntegerVariables............13 Example 3-2 EnlargingTables...............14 Example 3-3 Storing %LOC ReturnValues............14 Example 3-4 ModifyingCRoutinesCalledbyFortran........14 Example 3-5 DeclaringFortranArgumentsaslongints........15 Example 3-6 Changing Argument Declarations in Fortran Subprograms . 15 Example 4-1 ScripttoSetUpC-shellModulesEnvironment.......19 Example 4-2 ScripttoInitializeModulesEnvironment........19 Example 4-3 Compiler Command Line Syntax For Intel Version 7.x Compilers . 20 Example 4-4 Compiler Command Line Syntax For Intel Version 8.0 Compilers . 20 Example 4-5 Compiler Command Line Syntax for the GNU Compilers . 20 Example 5-1 BuildinganArchive..............30 Example 5-2 Usinggettimeofday()..............34 Example 5-3 Determiningclockresolutiontime..........36 Example 5-4 UsingMPITimingRoutines............37 007-4674-001 xiii About This Guide This publication provides information about porting an application to the SGI Altix platform Related Publications The following SGI publications contain additional information that may be helpful for user’s of SGI ProPack for Linux: • Linux Application Tuning Guide • Linux Configuration and Operations Guide • Linux Device Driver Programmer’s Guide - Porting to SGI Altix Systems • Linux Resource Administration Guide • Message Passing Toolkit (MPT) User’s Guide • Performance Co-Pilot for IA-64 Linux User’s and Administrator’s Guide • SGI Altix 3000 User’s Guide •SCSLUser’sGuide • SGI ProPack for Linux Start Here • XFS for Linux Administration Obtaining Publications You can obtain SGI documentation in the following ways: • See the SGI Technical Publications Library at http://docs.sgi.com. Various formats are available. This library contains the most recent and most comprehensive set of online books, release notes, man pages, and other information. 007-4674-001 xv About This Guide • IfitisinstalledonyourSGIsystem,youcanuseInfoSearch,anonlinetoolthat provides a more limited set of online books,