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Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Lichens of East Limestone Island
Lichens of East Limestone Island Stu Crawford, May 2012 Platismatia Crumpled, messy-looking foliose lichens. This is a small genus, but the Pacific Northwest is a center of diversity for this genus. Out of the six species of Platismatia in North America, five are from the Pacific Northwest, and four are found in Haida Gwaii, all of which are on Limestone Island. Platismatia glauca (Ragbag lichen) This is the most common species of Platismatia, and is the only species that is widespread. In many areas, it is the most abundant lichen. Oddly, it is not the most abundant Platismatia on Limestone Island. It has soredia or isidia along the edges of its lobes, but not on the upper surface like P. norvegica. It also isn’t wrinkled like P. norvegica or P. lacunose. Platismatia norvegica It has large ridges or wrinkles on its surface. These ridges are covered in soredia or isidia, particularly close to the edges of the lobes. In the interior, it is restricted to old growth forests. It is less fussy in coastal rainforests, and really seems to like Limestone Island, where it is the most abundant Platismatia. Platismatia lacunosa (wrinkled rag lichen) This species also has large wrinkles on its surface, like P. norvegica. However, it doesn’t have soredia or isidia on top of these ridges. Instead, it has tiny black dots along the edges of its lobes which produce spores. It is also usually whiter than P. lacunosa. It is less common on Limestone Island. Platismatia herrei (tattered rag lichen) This species looks like P. -
An Ecophysiological Approach to Quantifying Nitrogen Fixation by Lobaria Oregana
The Bryologist 107(1), pp. 82 87 Copyright q 2004 by the American Bryological and Lichenological Society, Inc. An Ecophysiological Approach to Quantifying Nitrogen Fixation by Lobaria oregana MARIE E. ANTOINE Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, U.S.A. e-mail: [email protected] Current address: Department of Biological Sciences, Humboldt State University, Arcata, CA 95521, U.S.A. Abstract. Lobaria oregana is an epiphytic macrolichen associated with old-growth Douglas- ®r forests in the Paci®c Northwest. Nitrogen ®xation by this often-abundant cyanolichen provides an ecologically signi®cant input of new N to the forest ecosystem. This study estimates annual N2 ®xation by L. oregana using a model based on physiological ®eld measurements and laboratory experiments. Meteorological data from the Wind River Canopy Crane site and the H. J. Andrews Experimental Forest are used to calculate annual N2 ®xation rates, assuming that hydration and temperature are the two parameters controlling nitrogenase activity. At the crane site, estimated 21 annual N2 ®xation is 1.5 kg ha . In the H. J. Andrews Experimental Forest, L. oregana may ®x 21 21 2.6±16.5 kg N2 ha yr depending on its stand-level canopy biomass. The model's predictions are checked by using published growth rates and standing L. oregana biomass estimates to cal- culate independent values for annual N2 ®xation at each site. Keywords. Cyanolichens, Lobaria oregana, nitrogen ®xation, old-growth lichens. Cyanolichens dominate epiphyte assemblages in with meteorological data to model N2 ®xation. This wet old-growth, mid-elevation Douglas-®r forests approach was used to estimate annual N2 ®xation of Oregon and Washington (Neitlich 1993; Pike et by L. -
Quantifying Dispersal and Establishment Limitation in a Population of an Epiphytic Lichen
Ecology, 87(8), 2006, pp. 2037–2046 Ó 2006 by the Ecological Society of America QUANTIFYING DISPERSAL AND ESTABLISHMENT LIMITATION IN A POPULATION OF AN EPIPHYTIC LICHEN 1 SILKE WERTH, HELENE H. WAGNER,FELIX GUGERLI,ROLF HOLDEREGGER,DANIELA CSENCSICS, 2 JESSE M. KALWIJ, AND CHRISTOPH SCHEIDEGGER Section Ecological Genetics, WSL Swiss Federal Research Institute, 8903 Birmensdorf, Switzerland Abstract. Dispersal is a process critical for the dynamics and persistence of metapopu- lations, but it is difficult to quantify. It has been suggested that the old-forest lichen Lobaria pulmonaria is limited by insufficient dispersal ability. We analyzed 240 DNA extracts derived from snow samples by a L. pulmonaria-specific real-time PCR (polymerase chain reaction) assay of the ITS (internal transcribed spacer) region allowing for the discrimination among propagules originating from a single, isolated source tree or propagules originating from other locations. Samples that were detected as positives by real-time PCR were additionally genotyped for five L. pulmonaria microsatellite loci. Both molecular approaches demonstrated substantial dispersal from other than local sources. In a landscape approach, we additionally analyzed 240 snow samples with real-time PCR of ITS and detected propagules not only in forests where L. pulmonaria was present, but also in large unforested pasture areas and in forest patches where L. pulmonaria was not found. Monitoring of soredia of L. pulmonaria transplanted to maple bark after two vegetation periods showed high variance in growth among forest stands, but no significant differences among different transplantation treatments. Hence, it is probably not dispersal limitation that hinders colonization in the old-forest lichen L. -
Lichen Abundance and Biodiversity Along a Chronosequence from Young Managed Stands to Ancient Forest
_ Lichen Abundance and Biodiversity Along a Chronosequence from Young Managed Stands to Ancient Forest By Peter N. Neitlich Submitted in Partial Fulfillment of Masters of Science Field Naturalist Program Department of Botany University of Vermont December 3, 1993 We, the members of Peter Nathan Neitlichs graduate committee, assert by our signatures that he has satisfied the requirements for graduation from the University of Vermonts Field Naturalist Program (Department of Botany). We recommend to the Graduate College of the University of Vermont that he be awarded the degree of Master of Science. v. 44 3 tte- Dr. 1:key Hughes, Advisor Date /7 4/a_ Ifn . Bruce McCune Date C we I c) NA., .7( to.e, i 9 Dr. Cathy Paris Date r) kly..t,t611 /553 Alicia Daniel Date TABLE OF CONTENTS List of Figures iii List of Tables iii List of Appendices iii Acknowledgements iv Abstract 1 Introduction 3 Methods 4 Study Area 4 Field Methods 11 Lab Analysis 13 Data Analysis 14 Results and Discussion 15 Effect of Stand Age on Lichen Species Composition 15 Effect of Stand Age on Lichen Abundance 20 Lichen Community Composition along a Chronosequence 29 Changes in Environmental Gradients through Time 34 Lichen Conservation and Forest Management 42 Amplifications 48 Invertebrates 48 Vertebrates 54 Nitrogen Fixation 56 Lichen Dispersal 58 References 63 Appendices 67 ii LIST OF FIGURES Fig. 1. Map of the study area 5 Fig. 2. Plant communities of the study area 6 Fig. 3. The effect of stand age on lichen species richness 15 Fig. 4. Epiphytic macrolichen biomass as a function of forest age 20 • Fig. -
Lesson of a Lichen
Lesson of a Lichen Objective: Grade: 3 Students will demonstrate understanding of the term symbiosis by Subject Areas: learning about mutualism through the Life Science, Language study of lichens. Arts Skills: classifying, Materials describing, drawing, • assorted samples of fungus, • lichen worksheet (see identifying, observing lichens and mosses (optional attached) to bring in algae) • magnifying glasses or Duration: 1 hour • reference materials/ loupes identification sheet? • paper and pencils Connections: social studies, evolution, Standards plant science, ecology Strands: Excellence in Environmental Education Guidelines Strand 1 — Questioning and Analysis: C) Collecting Information: Learners are able to locate and collect information about the environment Vocabulary and environmental topics. E) Organizing information: Learners are able symbiosis to describe data and organize information to search for relationships and patterns concerning the environment and environmental topics. commensalism Strand 2.2 — The Living Environment: C) Systems and Connections: epiphyte Learners understand basic ways in which organisms are related to their environments and to other organisms. parasitism mutualism California State Educational Standards: lichen Life Sciences (LS) 3a: Students know ecosystems can be characterized by their living and nonliving components. fungus LS 3b: Students know that in any particular environment, some kinds of algae plants and animals survive well, some survive less well, and some cannot survive at all. pioneer species Investigation and Experimentation 6a: Students will differentiate observation from inference (interpretation) and know scientists’ explanations come partly from what they observe and partly from how they interpret their observations. Background worms, and fleas. Theseanimals live benefit from their arrangement. Living Relationships off bodily fluids like blood and in doing This mutually beneficial relationship so can often spread disease or weaken iswidespread and certain species the host animal. -
Me LBCHEN GENUS Nephromé EN NORTH and MIDDLE AMERICA
me LBCHEN GENUS NEPHROMé EN NORTH AND MIDDLE AMERICA Thom 50? NW Degree of M. S. MICHIGAI‘Q STATE UNIVERSITY Clifford Major Wetmore 1959 . , . ‘ 231:: A.“ 1. [B R .4 R Y I‘w‘likhiftin 9mm Unhxcrsity A A. THE LICHEN GENUS giggtggm IN NORTH AND MIDDLE AMERICA by Clifford Major Wetmore AN ABSTRACT Submitted to the College of Science and Arts of Michigan State University of Agriculture and Applied Science in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Department of Botany and Plant Pathology 1959 Approved zazz:;L ‘é"_cézv"¢:;;“:? ABSTRACT This revision is based on a morphological, anatomical, and chemical study of 1,918 Specimens from twenty—one herbaria, as well as field work in Isle Royals National Park (Michigan), Haiti, and the Dominican Republic. The morphological and anatomical features are discussed in detail and twenty—nine original figures are included. The protuberances on the lower surface of g, resupiggfigg (L.) Ach. are corticate and, therefore, not true pseudo-eyphellae as often recorded in the literature. Eight lichen substances have been found in the genus: usnic acid, nephromin, zeorin, nephrin, and four unidentified neutral substances. These substances have taxonomic importance, although other workers in related genera have ignored them. The genus is placed in the Nephromaceae instead of the Peltigeraceae, where usually classified, because of the differences in ascus structure and development, conidial pros duction and the presence of a lower cortex in Neohroma, Seven species and two subspecies are recognized and a key for their identification is included along with a diagnosis, nomenclatural notes, and a distribution map for each species, Gyelnik's four new species and two new infraspecific taxa from North America are reduced to synonymy. -
Erigenia : Journal of the Southern Illinois Native Plant Society
•ifrnj 9 1988 -^ "W^TlsflT LHi^Etli^lo OCTOBER 1988 $5.00 THE LIBRARY OF THE OEC ' 9 . , Uf ILLINOIS JOURNAL OF THE ILLINOIS NATIVE PLANT SOCIETY ERIGENIA (ISSN 8755-2000) ERIGENIA Journal of The Illinois Native Plant Society Number 10 October 1988 Editor: Mark W. Mohlenbrock Contents Aart-werk Graphic Design, Inc. The Illinois Status of Llatrus scariosa (L.) P.O. Box 24591 Wllld. vor niewlandil Lunell. A New Tempe, AZ 85285 Threatened Species for Illinois 1 Editorial Review Board: by Marlin Bowles, Gerald Wilhelm, Dr. Donald Bissing Stephen Packard Dept. of Botany Clintonla - An Unusual Story Soutliern Illinois University 27 Dr. Dan Evans by Floyd Swink Biology Department Distribution Records for the Vascular Marsliai! University New of Northern Illinois Huntington, West Virginia Flora 28 Dr. Donald Ugent by Erwin F. Evert Dept. of Botany Illinois "Native" Mock Orange Southern Illinois University 38 Dr. John Ebinger by John E. Schwegman Department of Botany Macrolichens of Ponds Hollow Eastern Illinois University 42 Coordinator INPS Flora Update Project: by Gerald V\/ilhelm and Annette Parker Dr. Robert Mohlenbrock The Vascular Flora of Langham Island Dept. of Botany Kankakee County, Illinois Southern Illinois University 60 by John E. Schwegman THE HARBINGER Cover Photo: Liatris scariosa var. niewlandii (photo: M.L. Bowles) Quarterly Newsletter of tfie Society Editor: Dr. Robert Mohlenbrock Membership includes subscription to ERIGENIA as well Dept. of Botany as to the quarteriy newsletter THE HARBINGER. Southern Illinois University ERIGENIA (ISSN 8755-2000) the official journal of the Illinois Native Plant Society, is published occasionally by the Society. Single copies of this issue may be purchased for $5.00 (including postage) ERIGENIA is available by subscription only. -
Canopy Distribution and Survey Detectability of a Rare Old-Growth Forest Lichen ⇑ Jesse E.D
Forest Ecology and Management 392 (2017) 195–201 Contents lists available at ScienceDirect Forest Ecology and Management journal homepage: www.elsevier.com/locate/foreco Canopy distribution and survey detectability of a rare old-growth forest lichen ⇑ Jesse E.D. Miller a, , John Villella b, Greg Carey b, Tom Carlberg c, Heather T. Root d a Department of Environmental Science and Policy, University of California Davis, 1 Shields Avenue, Davis, CA 95616, United States b Siskiyou Biosurvey, LLC, Eagle Point, OR 97524, United States c Six Rivers National Forest, Eureka, CA 95501, United States d Botany Department, Weber State University, Ogden, UT 84403, United States article info abstract Article history: Forest managers in many parts of the world are charged with protecting rare lichen species, including Received 24 January 2017 species growing near their range limits. Rare lichens may be particularly vulnerable to effects of climate Accepted 5 March 2017 change, and conserving lichen diversity necessitates understanding factors that limit species distribu- tions. Habitat suitability envelopes for lichens are shifting as the climate changes, but it is unclear whether and how local (e.g., within-tree) lichen species distributions will shift. Conserving lichen biodi- Keywords: versity also requires effective field surveys to detect and monitor rare lichen populations. However, the Adaptation reliability of rare lichen survey methods currently used across global forest lands is rarely tested. In this Cyanolichens study, we quantify the canopy distribution of an epiphytic old-growth forest cyanolichen near its south- Epiphytic lichens Lobaria ern range limit and test whether ground surveys reliably detect canopy populations. Near its southern Range limits range limit, Lobaria oregana was most abundant in two distinct zones within tree crowns: on branches Survey and manage of large trees in the mid-crown, and on boles of small trees near ground level. -
Lobaria Oregana Is Likely Caused by Anthropogenic Nitrogen Emissions Authors: Elise Bugge1, Meaghan Petix1, Bruce Mccune2, R
Decreasing N2-fixation in Lobaria oregana is likely caused by anthropogenic nitrogen emissions Authors: Elise Bugge1, Meaghan Petix1, Bruce McCune2, R. Dave Evans1 1WSU Stable Isotope Core Facility, Washington State University 2Department of Botany and Plant Pathology, Oregon State University Abstract Results Stable Isotopes Nitrogen (N)-fixation is the dominant natural source of N in Pacific Northwest ecosystems, but low N -fixation rates result in N limitations to 2 d15N = (R / R - 1) ·1000 net primary productivity. However, anthropogenic emissions of N have x s increased globally due to agriculture and burning of fossil fuels. Long Lichen stable isotope composition is expressed as the molar ratio term N deposition has adverse effects such as eutrophication, soil (R) of the heavier to lighter N isotope (15N/14N). The R of each acidification, and loss of biodiversity. In Pacific coastal ecosystems, sample (Rx) is normalized relative to an international standard epiphytic lichen communities are a dominant source of N2-fixation, but (Rs) and expressed as the deviation from unity. Values are expressed as parts per thousand or per mil (‰) by multiplying by exceedance of the critical load of N from deposition may decrease N2- fixation by epiphytic lichens. Here, we test the hypothesis that 1000 because differences in R between samples are small. atmospheric N deposition from anthropogenic sources is decreasing N - 2 The nitrogen (N) content and stable isotope composition of each fixation by the cyanolichen, Lobaria oregana (Tuck.) Müll. Arg. We tested lichen sample was measured using an elemental analyzer (ECS the hypothesis by measuring the N stable isotope composition (d15N) of 4010, Costech Analytical, Valencia, CA, USA) coupled to a stable 15 herbarium lichen specimens from 1899 to current day. -
The Lichen Genus Sticta in the Great Smoky Mountains: a Phylogenetic Study of Morphological, Chemical, and Molecular Data
The Bryologist 106(1), pp. 61 79 Copyright q 2003 by the American Bryological and Lichenological Society, Inc. The Lichen Genus Sticta in the Great Smoky Mountains: A Phylogenetic Study of Morphological, Chemical, and Molecular Data TAMI MCDONALD* Department of Plant Biology, University of Minnesota, 1445 Gortner Ave., St. Paul, MN 55108, U.S.A. JOLANTA MIADLIKOWSKA Department of Biology, Duke University, Box 90338, Durham, NC 27708, U.S.A. and Department of Plant Tax- onomy and Nature Conservation, Gdansk University, Al. Legionow 9, 80-441 Gdansk, Poland; e-mail: jolantam@ duke.edu FRANCËOIS LUTZONI Department of Biology, Duke University, Box 90338, Durham, NC 27708, U.S.A. e-mail: ¯[email protected] Abstract. In this paper we segregate specimens from the genus Sticta in the Great Smoky Mountains National Park into phenotypic groups corresponding to putative species using tradi- tional taxonomic methods, paying particular attention to specimens from the S. weigelii s. l. group, then employ phylogenetic analyses and rigorous statistics to test the robustness of these species groups. In order to circumscribe putative species and to resolve the S. weigelii complex, mor- phological, chemical, and molecular characters from the nuclear ribosomal DNA sequences of the entire Internal Transcribed Spacer region are analyzed separately and simultaneously using maximum parsimony or maximum likelihood. In addition to the bootstrap method, Bayesian sta- tistics with the Markov Chain Monte Carlo algorithm are used to estimate branch robustness on the resulting reconstructed trees. Five out of six analyses recover the same ®ve monophyletic putative species from the genus Sticta, indicating the concordance of DNA-based and morphology- based species delimitation.