Physiological Roles of Animal Succinate Thiokinases
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Spectroscopy of Porphyrins
BORIS F. KIM and JOSEPH BOHANDY SPECTROSCOPY OF PORPHYRINS Porphyrins are an important class of compounds that are of interest in molecular biology because of the important roles they play in vital biochemical systems such as biochemical energy conversion in animals, oxygen transport in blood, and photosynthetic energy conversion in plants. We are studying the physical properties of the energy states of porphyrins using the techniques of ex perimental and theoretical spectroscopy with the aim of contributing to a basic understanding of their biochemical behavior. INTRODUCTION Metalloporphin Porphyrins are a class of complex organic chemical compounds found in such diverse places as crude oil, plants, and human beings. They are, in most cases, tailored to carry out vital chemical transformations in intricate biochemical or biophysical systems. They are the key constituents of chlorophyll in plants and of hemoglobin in animals. Without them, life would y be impossible. t Free base porphin These molecules display a wide range of chemical and physical properties that depend on the structural details of the particular porphyrin molecule. All por ~x phyrins are vividly colored and absorb light in the visible and ultraviolet regions of the spectrum. Some exhibit luminescence, paramagnetism, photoconduc tion, or semiconduction. Spme are photosensitizers Wavelength (nanometers) or catalysts. Scientists from several disciplines have been interested in unraveling the principles that cause Fig. 1-The chemical structures for the two forms of por· this diversity of properties. phin are shown on the left. A carbon atom and a hydrogen The simplest compound of all porphyrins is por atom are understood to be at each apex not attached to a nitrogen atom. -
Electronic Spectroscopy of Free Base Porphyrins and Metalloporphyrins
Absorption and Fluorescence Spectroscopy of Tetraphenylporphyrin§ and Metallo-Tetraphenylporphyrin Introduction The word porphyrin is derived from the Greek porphura meaning purple, and all porphyrins are intensely coloured1. Porphyrins comprise an important class of molecules that serve nature in a variety of ways. The Metalloporphyrin ring is found in a variety of important biological system where it is the active component of the system or in some ways intimately connected with the activity of the system. Many of these porphyrins synthesized are the basic structure of biological porphyrins which are the active sites of numerous proteins, whose functions range from oxygen transfer and storage (hemoglobin and myoglobin) to electron transfer (cytochrome c, cytochrome oxidase) to energy conversion (chlorophyll). They also have been proven to be efficient sensitizers and catalyst in a number of chemical and photochemical processes especially photodynamic therapy (PDT). The diversity of their functions is due in part to the variety of metals that bind in the “pocket” of the porphyrin ring system (Fig. 1). Figure 1. Metallated Tetraphenylporphyrin Upon metalation the porphyrin ring system deprotonates, forming a dianionic ligand (Fig. 2). The metal ions behave as Lewis acids, accepting lone pairs of electrons ________________________________ § We all need to thank Jay Stephens for synthesizing the H2TPP 2 from the dianionic porphyrin ligand. Unlike most transition metal complexes, their color is due to absorption(s) within the porphyrin ligand involving the excitation of electrons from π to π* porphyrin ring orbitals. Figure 2. Synthesis of Zn(TPP) The electronic absorption spectrum of a typical porphyrin consists of a strong transition to the second excited state (S0 S2) at about 400 nm (the Soret or B band) and a weak transition to the first excited state (S0 S1) at about 550 nm (the Q band). -
Porphyrins & Bile Pigments
Bio. 2. ASPU. Lectu.6. Prof. Dr. F. ALQuobaili Porphyrins & Bile Pigments • Biomedical Importance These topics are closely related, because heme is synthesized from porphyrins and iron, and the products of degradation of heme are the bile pigments and iron. Knowledge of the biochemistry of the porphyrins and of heme is basic to understanding the varied functions of hemoproteins in the body. The porphyrias are a group of diseases caused by abnormalities in the pathway of biosynthesis of the various porphyrins. A much more prevalent clinical condition is jaundice, due to elevation of bilirubin in the plasma, due to overproduction of bilirubin or to failure of its excretion and is seen in numerous diseases ranging from hemolytic anemias to viral hepatitis and to cancer of the pancreas. • Metalloporphyrins & Hemoproteins Are Important in Nature Porphyrins are cyclic compounds formed by the linkage of four pyrrole rings through methyne (==HC—) bridges. A characteristic property of the porphyrins is the formation of complexes with metal ions bound to the nitrogen atom of the pyrrole rings. Examples are the iron porphyrins such as heme of hemoglobin and the magnesium‐containing porphyrin chlorophyll, the photosynthetic pigment of plants. • Natural Porphyrins Have Substituent Side Chains on the Porphin Nucleus The porphyrins found in nature are compounds in which various side chains are substituted for the eight hydrogen atoms numbered in the porphyrin nucleus. As a simple means of showing these substitutions, Fischer proposed a shorthand formula in which the methyne bridges are omitted and a porphyrin with this type of asymmetric substitution is classified as a type III porphyrin. -
Emerging Applications of Porphyrins and Metalloporphyrins in Biomedicine and Diagnostic Magnetic Resonance Imaging
biosensors Review Emerging Applications of Porphyrins and Metalloporphyrins in Biomedicine and Diagnostic Magnetic Resonance Imaging Muhammad Imran 1,*, Muhammad Ramzan 2,*, Ahmad Kaleem Qureshi 1, Muhammad Azhar Khan 2 and Muhammad Tariq 3 1 Department of Chemistry, Baghdad-Ul-Jadeed Campus, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan; [email protected] 2 Department of Physics, Baghdad-Ul-Jadeed Campus, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan; [email protected] 3 Institute of Chemical Sciences, Bahauddin Zakariya University, Multan 60800, Pakistan; [email protected] * Correspondence: [email protected] (M.I.); [email protected] (M.R.) Received: 26 September 2018; Accepted: 17 October 2018; Published: 19 October 2018 Abstract: In recent years, scientific advancements have constantly increased at a significant rate in the field of biomedical science. Keeping this in view, the application of porphyrins and metalloporphyrins in the field of biomedical science is gaining substantial importance. Porphyrins are the most widely studied tetrapyrrole-based compounds because of their important roles in vital biological processes. The cavity of porphyrins containing four pyrrolic nitrogens is well suited for the binding majority of metal ions to form metalloporphyrins. Porphyrins and metalloporphyrins possess peculiar photochemical, photophysical, and photoredox properties which are tunable through structural modifications. Their beneficial photophysical properties, such as the long wavelength of emission and absorption, high singlet oxygen quantum yield, and low in vivo toxicity, have drawn scientists’ interest to discover new dimensions in the biomedical field. Applications of porphyrins and metalloporphyrins have been pursued in the perspective of contrast agents for magnetic resonance imaging (MRI), photodynamic therapy (PDT) of cancer, bio-imaging, and other biomedical applications. -
Vitamin B12 Promotes Porphyrin Production in Acne-Associated P
UCLA UCLA Electronic Theses and Dissertations Title Porphyrin production and regulation in different Propionibacterium acnes lineages contribute to acne vulgaris pathogenesis Permalink https://escholarship.org/uc/item/9g02d15m Author Johnson, Tremylla Publication Date 2017 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA Los Angeles Porphyrin production and regulation in different Propionibacterium acnes lineages contribute to acne vulgaris pathogenesis A dissertation submitted in partial satisfaction of the requirement for the degree Doctor of Philosophy in Molecular and Medical Pharmacology by Tremylla A. Johnson 2017 © Copyright by Tremylla A. Johnson 2017 ABSTRACT OF THE DISSERTATION Porphyrin production and regulation in different Propionibacterium acnes lineages contribute to acne vulgaris pathogenesis by Tremylla A. Johnson Doctor of Philosophy in Molecular & Medical Pharmacology University of California, Los Angeles, 2017 Professor Huiying Li, Chair Propionibacterium acnes is a dominant human skin commensal. It has been implicated in acne pathogenesis, but its role remains unclear. Recent metagenomic studies have revealed that certain P. acnes strains are highly associated with acne, while some others are associated with healthy skin. Little information exists about P. acnes strain-level differences beyond the genomic differences. In this study, I revealed that acne-associated type IA P. acnes strains produced significantly higher levels of porphyrins (a metabolite important in acne development) than health-associated strains (type II). Strains of type IA-1 and type IA-2 produced similar levels of porphyrins. Moreover, porphyrin production in these P. acnes strains is modulated by vitamin B12. On the other hand, health-associated type II strains produced low levels of ii porphyrins and did not respond to vitamin B12. -
Expanding the Eggshell Colour Gamut: Uroerythrin and Bilirubin from Tinamou (Tinamidae) Eggshells Randy Hamchand1, Daniel Hanley2, Richard O
www.nature.com/scientificreports OPEN Expanding the eggshell colour gamut: uroerythrin and bilirubin from tinamou (Tinamidae) eggshells Randy Hamchand1, Daniel Hanley2, Richard O. Prum3 & Christian Brückner1* To date, only two pigments have been identifed in avian eggshells: rusty-brown protoporphyrin IX and blue-green biliverdin IXα. Most avian eggshell colours can be produced by a mixture of these two tetrapyrrolic pigments. However, tinamou (Tinamidae) eggshells display colours not easily rationalised by combination of these two pigments alone, suggesting the presence of other pigments. Here, through extraction, derivatization, spectroscopy, chromatography, and mass spectrometry, we identify two novel eggshell pigments: yellow–brown tetrapyrrolic bilirubin from the guacamole- green eggshells of Eudromia elegans, and red–orange tripyrrolic uroerythrin from the purplish-brown eggshells of Nothura maculosa. Both pigments are known porphyrin catabolites and are found in the eggshells in conjunction with biliverdin IXα. A colour mixing model using the new pigments and biliverdin reproduces the respective eggshell colours. These discoveries expand our understanding of how eggshell colour diversity is achieved. We suggest that the ability of these pigments to photo- degrade may have an adaptive value for the tinamous. Birds’ eggs are found in an expansive variety of shapes, sizes, and colourings 1. Te diverse array of appearances found across Aves is achieved—in large part—through a combination of structural features, solid or patterned colorations, the use of two diferent dyes, and diferential pigment deposition. Eggshell pigments are embedded within the white calcium carbonate matrix of the egg and within a thin outer proteinaceous layer called the cuticle2–4. Tese pigments are believed to play a key role in crypsis5,6, although other, possibly dynamic 7,8, roles in inter- and intra-species signalling5,9–12 are also possible. -
To a Protoporphyrin. Thus, Type I Porphyrinogens Or Their Respective Porphyrins Reduced Production Oftype III Porphyrin and Hemo
A SUGGESTED CONTROL GENE MECHANISM FOR THE EXCESSIVE PRODUCTION OF TYPES I AND III PORPHYRINS IN CONGENJ TAL ERYTHROPOIETIC PORPHYRIA* BY C. J. WATSON, W. RUNGE, L. TADDEINI, IRENE BOSSENMAIER, AND RUTH CARDINAL DEPARTMENT OF MEDICINE, UNIVERSITY OF MINNESOTA, MINNEAPOLIS Communicated June 19, 1964 The curious phenotype of erythropoietic porphyria, both human and bovine, is directly related to the large amounts of type I porphyrins produced by the develop- ing red cells of the bone marrow. The excessive uroporphyrin (URO-) I is respon- sible for the photocutaneous manifestations, as well as the red urine, teeth, and bones. The spleen enlarges and is at least partly responsible for the increased destruction of circulating red cells so often observed. This stimulates erythro- poiesis and heightened formation of porphyrins, as described elsewhere.1-3 It has been proposed4-7 that the genetic error is a deficiency of uroporphyrinogen (UPG) isomerase. This enzyme directs cyclization to UPG III, of the polypyrryl methane first formed from porphobilinogen (PBG) by PBG deaminase. UPG III is preferentially converted by a decarboxylase to coproporphyrinogen (CPG) III and this by virtue of a coproporphyrinogenase (CPGase), to the corresponding protoporphyrin (PROTO-) and heme. In the absence or relative paucity of isomerase the polypyrryl methane from PBG cyclizes to UPG I, and is decarboxyl- ated in varying proportion to CPG I. With possible rare and minor exceptions,8 the specificity of CPGase for type III is maintained, and CPG-I is not converted to a protoporphyrin. Thus, type I porphyrinogens or their respective porphyrins are excreted or accumulated. This has been discussed in recent reviews.4-7 If the inborn error were an isomerase deficiency, a markedly reduced production of type III porphyrin and hemoglobin might be anticipated. -
Biliverdin Reductase: a Major Physiologic Cytoprotectant
Biliverdin reductase: A major physiologic cytoprotectant David E. Baran˜ ano*, Mahil Rao*, Christopher D. Ferris†, and Solomon H. Snyder*‡§¶ Departments of *Neuroscience, ‡Pharmacology and Molecular Sciences, and §Psychiatry and Behavioral Sciences, The Johns Hopkins University School of Medicine, Baltimore, MD 21205; and †Department of Medicine, Division of Gastroenterology, C-2104 Medical Center North, Vanderbilt University Medical Center, Nashville, TN 37232-2279 Contributed by Solomon H. Snyder, October 16, 2002 Bilirubin, an abundant pigment that causes jaundice, has long hypothesize that bilirubin acts in a catalytic fashion whereby lacked any clear physiologic role. It arises from enzymatic reduction bilirubin oxidized to biliverdin is rapidly reduced back to bili- by biliverdin reductase of biliverdin, a product of heme oxygenase rubin, a process that could readily afford 10,000-fold amplifica- activity. Bilirubin is a potent antioxidant that we show can protect tion (13). Here we establish that a redox cycle based on BVRA cells from a 10,000-fold excess of H2O2. We report that bilirubin is activity provides physiologic cytoprotection as BVRA depletion a major physiologic antioxidant cytoprotectant. Thus, cellular de- exacerbates the formation of reactive oxygen species (ROS) and pletion of bilirubin by RNA interference markedly augments tissue augments cell death. levels of reactive oxygen species and causes apoptotic cell death. Depletion of glutathione, generally regarded as a physiologic Methods antioxidant cytoprotectant, elicits lesser increases in reactive ox- All chemicals were obtained from Sigma unless otherwise ygen species and cell death. The potent physiologic antioxidant indicated. actions of bilirubin reflect an amplification cycle whereby bilirubin, acting as an antioxidant, is itself oxidized to biliverdin and then Cell Culture and Viability Measurements. -
The Porphyrin Handbook
ThePorphyrinHandbook Editors KarlM.Kadish DepartmentofChemistry UniversityofHouston Houston,Texas KevinM.Smith DepartmentofChemistry UniversityofCalifornia,Davis Davis,California RogerGuilard FaculteÂdesSciencesGabriel UniversiteÂdeBourgogne Dijon,France SANDIEGOSANFRANCISCO NEWYORKBOSTON LONDONSYDNEY TORONTO Preface The broadly de®ned porphyrin research area is one of the this is a data-intensive ®eld, and we believe that compilation most exciting, stimulating and rewarding for scientists in the of relevant data should be useful to investigators. We have ®elds of chemistry, physics, biology and medicine. The attempted to ensure that every chapter was written by the beautifully constructed porphyrinoid ligand, perfected over currently acknowledged expert in the ®eld, and very early on the course of evolution, provides the chromophore for a we had in our hands no less than sixty-nine signed contracts multitude of iron, magnesium, cobalt and nickel complexes for chapters. With the fullness of time, and as deadlines for which are primary metabolites and without which life itself Handbook chapter submission and other essential activities could not be maintained. (e.g., research proposal renewals) converged, some of our Falk's book, Porphyrins and Metalloporphyrins, pub- authors had to withdraw. On occasion we were able to lished in 1962, was a fairly thin volume which represented recruit new authors who, with only a month or less of lead the ®rst attempt to apply the principles of modern chemistry time, were able to ®ll these gaps and come -
Hereditary Coproporphyria: Incidence in a Large English Family *
J Med Genet: first published as 10.1136/jmg.21.5.341 on 1 October 1984. Downloaded from Journal ofMedical Genetics, 1984, 21, 341-349 Hereditary coproporphyria: incidence in a large English family * J ANDREWSt, H ERDJUMENT+, AND D C NICHOLSON+ From the tDepartment of Geriatric Medicine, West Middlesex University Hospital, Isleworth, Middlesex; and ithe Department of Chemical Pathology, King's College Hospital Medical School, London SE5. SUMMARY In a family inheiiting the hereditary coproporphyria (HCP) gene, where 414 descendants have been traced through six generations and 135 members screened for faecal porphyrins, 27 subjects were found to have inherited the gene as well as the proband. Seven (six female and one male) in retrospect had probably previously suffered from a clinical attack of porphyria. Enzy- mological studies were carried out on 15 members and two unaffected parents and these results in general agreed with the faecal coproporphyrin readings. Symptomatic illness is low in HCP and is almost always precipitated by drugs known to have an adverse effect on the condition. If the gene is inherited, an attack can occur at any time between puberty and old age, such as in the proband at 84 years. We have detected abnormal faecal copro- porphyrin levels in members of this pedigree as young as 12 years and as old as 87 years. Recommendations are given concerning the necessity of tracing relatives who may have inherited the gene and arranging for their biochemical screening and genetic counselling if indicated. copyright. Dobriner1 first described the presence of excessive drug history was taken. Porphyrin estimations on the amounts of coproporphyrin isomer III in certain faeces were then carried out on the oldest surviving patients and the first clinical description was members ofeach branch of the family and, ifpositive, recorded in 1949.2 Smaller family series have been all the next generation and their progeny, if indi- reported by Haeger-Aronsen et al,3 Dean and cated, were tested. -
Continuous Chlorophyll Degradation Accompanied by Chlorophyllide and Phytol Reutilization for Chlorophyll Synthesis in Synechocystis Sp
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biochimica et Biophysica Acta 1767 (2007) 920–929 www.elsevier.com/locate/bbabio Continuous chlorophyll degradation accompanied by chlorophyllide and phytol reutilization for chlorophyll synthesis in Synechocystis sp. PCC 6803 ⁎ Dmitrii Vavilin, Wim Vermaas School of Life Sciences and Center for the Study of Early Events in Photosynthesis, Arizona State University, Box 874501, Tempe, AZ 85287, USA Received 3 January 2007; received in revised form 23 March 2007; accepted 27 March 2007 Available online 3 April 2007 Abstract Chlorophyll synthesis and degradation were analyzed in the cyanobacterium Synechocystis sp. PCC 6803 by incubating cells in the presence of 13C-labeled glucose or 15N-containing salts. Upon mass spectral analysis of chlorophyll isolated from cells grown in the presence of 13C-glucose for different time periods, four chlorophyll pools were detected that differed markedly in the amount of 13C incorporated into the porphyrin (Por) and phytol (Phy) moieties of the molecule. These four pools represent (i) unlabeled chlorophyll (12Por12Phy), (ii) 13C-labeled chlorophyll (13Por13Phy), and (iii, iv) chlorophyll, in which either the porphyrin or the phytol moiety was 13C-labeled, whereas the other constituent of the molecule remained unlabeled (13Por12Phy and 12Por13Phy). The kinetics of 12Por12Phy disappearance, presumably due to chlorophyll de- esterification, and of 13Por12Phy, 12Por13Phy, and 13Por13Phy accumulation due to chlorophyll synthesis provided evidence for continuous chlorophyll turnover in Synechocystis cells. The loss of 12Por12Phy was three-fold faster in a photosystem I-less strain than in a photosystem II- less strain and was accelerated in wild-type cells upon exposure to strong light. -
Studies on the Biosynthesis of Porphyrin and Bacteriochlorophyll by Rhodopseudomonas Spheroides 2. the Effects of Ethionine and Threonine
550 Biochem. J. (1962) 83, 550 Studies on the Biosynthesis of Porphyrin and Bacteriochlorophyll by Rhodopseudomonas spheroides 2. THE EFFECTS OF ETHIONINE AND THREONINE BY K. D. GIBSON, A. NEUBERGER AND G. H. TAIT* Department of Chemical Pathology and Medical Research Council Research Group in Enzymology, St Mary'8 Hospital Medical School, London, W. 2 (Received 28 December 1961) Gibson, Neuberger & Tait (1962) mentioned RESULTS briefly that, when ethionine was added to suspen- sions of Rhodop8eudomona8 8pheroides illuminated Effect of ethionine on the 8ynthe8i8 of in 'mixture I' of Lascelles (1956), large amounts of porphyrins and bacteriochlorophyll porphyrin accumulated in the medium, although During investigation of the role of biotin in por- growth and bacteriochlorophyll synthesis were in- phyrin synthesis (Gibson et al. 1962), various in- hibited. This was rather surprising since other hibitors of growth were examined to see whether inhibitors of growth prevented the formation of they would prevent the restoration of growth and porphyrin and bacteriochlorophyll. In the present the synthesis of porphyrins and bacteriochloro- paper the effect of ethionine is described in more phyll when deficient organisms are illuminated in detail. Of a large number of other compounds only the presence of biotin. The compounds tested were threonine was found to have a similar effect. In the DL-p-fluorophenylalanine, 8-azaguanine, 5-bromo- presence of ethionine or threonine the synthesis of uracil and DL-ethionine. The first three are partly bacteriochlorophyll can be restored and porphyrin successful in preventing growth and porphyrin and excretion reduced by methionine or homocysteine. bacteriochlorophyll synthesis when added with These results suggested that ethionine exerts its biotin to biotin-deficient organisms illuminated in effect by interfering with the synthesis or utiliza- mixture I.