Effetcs of Root Zone Composition and Nitrogen and Phosphorus Rates On
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
<I>Glomeromycota</I>
ISSN (print) 0093-4666 © 2011. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON Volume 116, pp. 365–379 April–June 2011 doi: 10.5248/116.365 Glomeromycota: two new classes and a new order Fritz Oehl1*, Gladstone Alves da Silva2, Bruno Tomio Goto3, Leonor Costa Maia2& Ewald Sieverding4 1Federal Research Institute Agroscope Reckenholz-Tänikon ART, Ecological Farming Systems, Reckenholzstrasse 191, CH-8046 Zürich, Switzerland 2Departamento de Micologia, CCB, Universidade Federal de Pernambuco, Av. Prof. Nelson Chaves s/n, Cidade Universitária, 50670-420, Recife, PE, Brazil 3Departamento de Botânica, Ecologia e Zoologia, CB, Universidade Federal do Rio Grande do Norte, Campus Universitário, 59072-970, Natal, RN, Brazil 4Institute for Plant Production and Agroecology in the Tropics and Subtropics, University of Hohenheim, Garbenstrasse 13, D-70599 Stuttgart, Germany *Correspondence to: [email protected] Abstract — Based on concomitant molecular analyses of the ribosomal gene and morphological characteristics, we divide the phylum Glomeromycota into three classes: Glomeromycetes, Archaeosporomycetes, and Paraglomeromycetes. Glomeromycetes are newly organized in three orders: Glomerales and Diversisporales, both forming typical vesicular arbuscular mycorrhiza with higher plants, and Gigasporales, forming arbuscular mycorrhiza without vesicles in the roots but with extra-radical auxiliary cells. Within the phylum, Archaeosporomycetes comprise exclusively bimorphic families and genera. The monogeneric Paraglomeromycetes species form glomoid spores that typically germinate directly through the spore wall instead through their subtending hyphae. Key words — evolution, Gigasporineae, Gigasporaceae, molecular phylogeny, rDNA Introduction In 1998, a new fungal class, the Glomeromycetes, was proposed, originally within the Zygomycota, but subsequently transferred to its own phylum, the Glomeromycota C. Walker & A. Schüssler (Schüßler et al. -
Diversity of Cultured Isolates and Field Populations of The
Diversity of cultured isolates and field populations of the arbuscular mycorrhizal fungus Glomus intraradices: Development and application of molecular detection methods for mitochondrial haplotypes Inauguraldissertation zur Erlangung der Würde eines Doktors der Philosophie vorgelegt der Philosophisch-Naturwissenschaftlichen Fakultät der Universität Basel von Boris Börstler aus Braunschweig, Deutschland Basel, 2010 Genehmigt von der Philosophisch-Naturwissenschaftlichen Fakultät auf Antrag von Prof. Dr. Thomas Boller, Prof. Dr. Dirk Redecker, Prof. Dr. Andres Wiemken Basel, den 22.06.2010 Prof. Dr. Eberhard Parlow, Dekan Table of contents Summary .............................................................................................................................. 1 Chapter 1: General introduction........................................................................................ 3 1.1 Mycorrhizas – origin, evolution and types ............................................................................... 3 1.2 The arbuscular mycorrhiza (AM) ............................................................................................. 7 1.2.1 Phylogeny and taxonomy of the Glomeromycota ............................................................. 7 1.2.2 Species concept and genetics of AM fungi (AMF) ......................................................... 12 1.2.3 Structural features of the AM and life cycle of AMF ..................................................... 13 1.2.4 AM partnerships: benefits and ecology .......................................................................... -
Glomeromycota
Glomeromycota: Glomerales the arbuscular mycorrhizae Classification based on limited morphology now under revision due to molecular evidence 1 Order: Glomerales (=Glomales) About 200 species, three families (based on morphology): Acaulosporaceae Gigasporaceae Glomaceae Arbuscular mycorrhizae The most common type of mycorrhizae Widespread distribution, temperate, tropical and widespread among plant families Essential to ecosystem function, mineral nutrient uptake by plants Apparently very many more plant species than AM fungal species So AM fungi are thought to be generalists, not host specialized BUT variation among AM fungi in P uptake ability and other effects, protection of roots against pathogens, etc still may indicate effects of AM diversity on plant community diversity There may be multiple species of AM fungi present in a particular area even if one AM fungus species is capable of forming mycorrhizae with all of the plant species present General characteristics coenocytic hyphae, non septate meiosis unknown no evidence of sexual reproduction lack fruiting structure of Basidiomycota & Ascomycota no flagellated state in life cycle obligate symbionts (?) endomycorrhizae or vesicular-arbuscular mycorrhizae (AM or VAM fungi) or symbiosis with cyanobacteria (Geosiphon with Nostoc) none has been grown in culture very large (40 – 800 µm) asexual spores multinucleate, hundreds to thousands of nuclei layered walls 200 species probably an underestimate of true diversity Glomeralean fungi structures Hyphae Within root (intraradical) and outside -
Four New Species of Arbuscular Mycorrhizal Fungi (Glomeromycota) Associated with Endemic Plants from Ultramafic Soils of New Caledonia
Four new species of arbuscular mycorrhizal fungi (Glomeromycota) associated with endemic plants from ultramafic soils of New Caledonia Thomas Crossay, Alexis Cilia, Yvon Cavaloc, Hamid Amir & Dirk Redecker Mycological Progress ISSN 1617-416X Mycol Progress DOI 10.1007/s11557-018-1386-5 1 23 Your article is protected by copyright and all rights are held exclusively by German Mycological Society and Springer-Verlag GmbH Germany, part of Springer Nature. This e-offprint is for personal use only and shall not be self-archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Mycological Progress https://doi.org/10.1007/s11557-018-1386-5 ORIGINAL ARTICLE Four new species of arbuscular mycorrhizal fungi (Glomeromycota) associated with endemic plants from ultramafic soils of New Caledonia Thomas Crossay1 & Alexis Cilia1 & Yvon Cavaloc1 & Hamid Amir1 & Dirk Redecker2 Received: 13 September 2017 /Revised: 2 February 2018 /Accepted: 8 February 2018 # German Mycological Society and Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract Four new species of arbuscular mycorrhizal (AM) fungi (Glomeromycota) were isolated from the rhizosphere of en- demic metallophytic plants in ultramafic soils inNewCaledonia(SouthPacific)andpropagatedonSorghum vulgare. -
Toward a Fully Resolved Fungal Tree of Life
Annual Review of Microbiology Toward a Fully Resolved Fungal Tree of Life Timothy Y. James,1 Jason E. Stajich,2 Chris Todd Hittinger,3 and Antonis Rokas4 1Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan 48109, USA; email: [email protected] 2Department of Microbiology and Plant Pathology, Institute for Integrative Genome Biology, University of California, Riverside, California 92521, USA; email: [email protected] 3Laboratory of Genetics, DOE Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Center for Genomic Science and Innovation, J.F. Crow Institute for the Study of Evolution, University of Wisconsin–Madison, Madison, Wisconsin 53726, USA; email: [email protected] 4Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee 37235, USA; email: [email protected] Annu. Rev. Microbiol. 2020. 74:291–313 Keywords First published as a Review in Advance on deep phylogeny, phylogenomic inference, uncultured majority, July 13, 2020 classification, systematics The Annual Review of Microbiology is online at micro.annualreviews.org Abstract https://doi.org/10.1146/annurev-micro-022020- Access provided by Vanderbilt University on 06/28/21. For personal use only. In this review, we discuss the current status and future challenges for fully 051835 Annu. Rev. Microbiol. 2020.74:291-313. Downloaded from www.annualreviews.org elucidating the fungal tree of life. In the last 15 years, advances in genomic Copyright © 2020 by Annual Reviews. technologies have revolutionized fungal systematics, ushering the field into All rights reserved the phylogenomic era. This has made the unthinkable possible, namely ac- cess to the entire genetic record of all known extant taxa. -
Draft Classification of the Fungi. July 15, 2005 Phylum Subphylum Class
Draft classification of the Fungi. July 15, 2005 Phylum Subphylum Class Subclass Order Consultants Glomeromycota Arthur Schussler Joe Morton Jim Trappe Archaeosporales Diversisporales Glomerales Paraglomerales Microsporidiomycota Naomi Fast James Becnel Charles Vossbrink Microsporidiomycetes Microsporidales Minisporidales Pleistophoridales Orders incertae sedis Cylindrosporidales Zygomycota Kerry O’Donnell Rich Humber Bob Lichtwardt Merlin White Gerald Benny Mucoromycotina Mucorales Endogonales Mortierellales Harpellomycotina Kickxellales Dimargaritales Harpellales Asellariales Entomophthoromycotina Entomophthorales Genera incertae sedis Basidiobolus Chytridiomycota Joyce Longcore David Porter Peter Letcher Sharon Mozley- Standridge Blastocladiomycotina Blastocladiomycetes Blastocladiales Chytridiomycotina Chytridiomycetes Chytridiales Spizellomycetales Neocallimastigomycetes Neocallimastigales Monoblepharomycetes Monoblepharidales Genera incertae sedis Olpidium Rozella Ascomycota John Taylor Mary Berbee Meredith Blackwell Classes Incertae Junta Sugiyama sedis Neolectomycetes Pneumocystidomycetes Schizosaccharomycetes Taphrinomycetes Saccharomycotina Clete Kurtzman Sung-Oui Suh Saccharomycetes Saccharomycetales Pezizomycotina Arthoniomycetes ? Arthoniales Dothideomycetes Pedro Crous Conrad Schoch Mary Berbee Bob Shoemaker Sarah Hambleton Barry Pryor Capnodiales Dothideales Hysteriales Jahnulales Myriangiales Patellariales Pleosporales Eurotiomycetes David Geiser John Pitt Cécile Gueidan Randy Currah Wendy Untereiner Chaetothyriomycetidae -
Paraglomus Occidentale, a New Arbuscular Mycorrhizal Fungus from the Sources of the Amazon River in Peru, with a Key to the Paraglomeromycetes Species
DOI 10.12905/0380.sydowia72-2020-0085 Published online 6 February 2020 Paraglomus occidentale, a new arbuscular mycorrhizal fungus from the sources of the Amazon river in Peru, with a key to the Paraglomeromycetes species Mike Anderson Corazon-Guivin1*, Agustín Cerna-Mendoza1, Juan Carlos Guerrero-Abad1,2, Adela Vallejos-Tapullima1, Orlando Ríos-Ramírez1, Geomar Vallejos-Torres1, Ana Maria de la Sota-Ricaldi1, Viviane Monique Santos3, Gladstone Alves da Silva3 & Fritz Oehl4,* 1 Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca N° 315, Morales, Peru 2 Instituto Nacional de Innovación Agraria (INIA). Dirección General de Recursos Genéticos y Biotecnología. Av. La Molina 1981, La Molina - Lima, Peru 3 Departamento de Micologia, CB, Universidade Federal de Pernambuco, Av. da engenharia s/n, Cidade Universitária, 50740-600, Recife, PE, Brazil 4 Agroscope, Competence Division for Plants and Plant Products, Ecotoxicology, Müller-Thurgau-Strasse 29, 8820 Wädenswil, Switzerland *e-mail: [email protected], [email protected] Corazon-Guivin M.A., Cerna-Mendoza A., Guerrero-Abad J.C.,Vallejos-Tapullima A., Ríos-Ramírez O., Vallejos-Torres G., de la Sota-Ricaldi A.M., Santos V.M., da Silva G.A. & Oehl F. (2020) Paraglomus occidentale, a new arbuscular mycorrhizal fungus from the sources of the Amazon river in Peru, with a key to the Paraglomeromycetes species. – Sydowia 72: 85–94. A new arbuscular mycorrhizal fungus, Paraglomus occidentale, was found in an agricultural plantation of the inka nut (Plukenetia volubilis) in the Amazonia region of San Martín State in Peru. The inka nut was grown in mixed cultures together with Zea mays and Phaseolus vulgaris. -
A Leap Towards Unravelling the Soil Microbiome
A leap towards unravelling the soil microbiome Paula Harkes Thesis committee Promotor Prof. Dr Jaap Bakker Professor of Nematology, Wageningen University & Research Co-promotor Dr Johannes Helder Associate Professor at the Laboratory of Nematology, Wageningen University & Research Other members Prof. Dr Wietse de Boer, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen Dr Davide Bulgarelli, University of Dundee, England Prof. Dr George Kowalchuk, Utrecht University Prof. Dr Franciska de Vries, University of Amsterdam This research was conducted under the auspices of the C.T. de Wit Graduate School of Production Ecology and Resource Conservation. A leap towards unravelling the soil microbiome Paula Harkes Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus, Prof. Dr A.P.J. Mol, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Friday 10 January 2020 at 4:00 p.m. in the Aula. Paula Harkes A leap towards unravelling the soil microbiome PhD Thesis Wageningen University, Wageningen, The Netherlands (2020) With references and with summaries in English and Dutch. ISBN: 978-94-6395-150-0 DOI: 10.18174/501980 “There's no limit to how much you'll know, depending how far beyond zebra you go.” Dr. Seuss ― Table of contents Chapter 1 General introduction 9 Chapter 2 The differential impact of a native and a non-native 23 ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere -
<I>Glomeromycota</I>: Two New Classes and a New Order
ISSN (print) 0093-4666 © 2011. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON Volume 116, pp. 365–379 April–June 2011 doi: 10.5248/116.365 Glomeromycota: two new classes and a new order Fritz Oehl1*, Gladstone Alves da Silva2, Bruno Tomio Goto3, Leonor Costa Maia2& Ewald Sieverding4 1Federal Research Institute Agroscope Reckenholz-Tänikon ART, Ecological Farming Systems, Reckenholzstrasse 191, CH-8046 Zürich, Switzerland 2Departamento de Micologia, CCB, Universidade Federal de Pernambuco, Av. Prof. Nelson Chaves s/n, Cidade Universitária, 50670-420, Recife, PE, Brazil 3Departamento de Botânica, Ecologia e Zoologia, CB, Universidade Federal do Rio Grande do Norte, Campus Universitário, 59072-970, Natal, RN, Brazil 4Institute for Plant Production and Agroecology in the Tropics and Subtropics, University of Hohenheim, Garbenstrasse 13, D-70599 Stuttgart, Germany *Correspondence to: [email protected] Abstract — Based on concomitant molecular analyses of the ribosomal gene and morphological characteristics, we divide the phylum Glomeromycota into three classes: Glomeromycetes, Archaeosporomycetes, and Paraglomeromycetes. Glomeromycetes are newly organized in three orders: Glomerales and Diversisporales, both forming typical vesicular arbuscular mycorrhiza with higher plants, and Gigasporales, forming arbuscular mycorrhiza without vesicles in the roots but with extra-radical auxiliary cells. Within the phylum, Archaeosporomycetes comprise exclusively bimorphic families and genera. The monogeneric Paraglomeromycetes species form glomoid spores that typically germinate directly through the spore wall instead through their subtending hyphae. Key words — evolution, Gigasporineae, Gigasporaceae, molecular phylogeny, rDNA Introduction In 1998, a new fungal class, the Glomeromycetes, was proposed, originally within the Zygomycota, but subsequently transferred to its own phylum, the Glomeromycota C. Walker & A. Schüssler (Schüßler et al. -
Elsevier Editorial System(Tm) for Mycological Research
Elsevier Editorial System(tm) for Mycological Research Manuscript Draft Manuscript Number: MYCRES-D-07-00031R2 Title: A Higher-Level Phylogenetic Classification of the Fungi Article Type: Original Research Keywords: AFTOL, Eumycota, Lichens, Molecular phylogenetics, Mycota, Nomenclature, Systematics Corresponding Author: David S. Hibbett, Corresponding Author's Institution: Clark University First Author: David S Hibbett, PhD Order of Authors: David S Hibbett, PhD; David S. Hibbett Manuscript Region of Origin: UNITED STATES Abstract: A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 19 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Agaricomycetes, Dacrymycetes, Monoblepharidomycetes, Neocallimastigomycetes, Tremellomycetes class. nov.; Eurotiomycetidae, Lecanoromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota.