DOCSLIB.ORG

Database Versioning – Each Version of the OMERO Database Comes 4

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Database Versioning – Each Version of the OMERO Database Comes 4 The OMERO Platform An open source solution for microscopy metadata management, visualization and analysis C. Allan, C. Blackburn, J.-M. Burel, K. Eliceiri, P. Forbes, X. Jiang, M. Linkert, B. Loranger, S. Loynton, C. Macaulay, D. MacDonald, J. Moore, W. Moore, C. Neves, A. J. Patterson, C. Rueden, D. Sloan, A. Tarkowska, J.R. Swedlow OMERO Installs Oct 2008 Wellcome Trust Centre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK Glencoe Software , Inc. S OMERO.server N OMERO.insight Laboratory for Optical and Computational Instrumentation, University of Wisconsin-Madison, Madison, WI, USA Usable Image, School of Computing, University of Dundee, Dundee, Scotland, UK M OMERO.importer E OMERO.editor open microscopy environment Recently, we have started adding in specic image processing and analy- Manage Abstract sis functions, along with facilities for running your own self-scripted algo- OMERO.importer OMERO.insight Rate LOCI Bio-Formats rithms and transformations. View Bio-Formats is a standalone Java library for reading and writing micro- The OMERO Platform aims to provide a complete solution for image data OMERO is an open source development project and we welcome input, OMERO.importer is a desktop tool for importing over 30 dierent le for- OMERO.insight is a desktop tool for accessing, manipulating, collaborating, Measure scopy le formats. It is capable of parsing both pixels and metadata management. Both cross-platform and cross-language, OMERO provides advice, comments, and help. Go to http://www.openmicroscopy.org and mats into our centralized OMERO server. Designed as a re and forget appli- viewing and performing basic measurement on data stored in an installa- Attach for a large number of formats, as well as writing to several formats. highly-scalable remote access to your raw data and metadata from any- see what we are up to! cation, it is ideally suited for importing your images in the background, tion of OMERO.server. Search where in the world, even over a wireless connection. while you work, or operating after hours while your computer sits idle. The Data Management Tag Collaborate Bio-Formats's primary purpose is to convert proprietary microscopy importer's import queue enables you to browse and select les for import, • In the left-hand pane is a traditional tree-based view of the data hierar- Annotate data into the OME data model, an open standard. This may be stored organize them into projects and datasets, provide brief annotations, and chies in your OMERO.server. google: OMERO http://www.openmicroscopy.org/ as either OME-XML or the more space efficient OME-TIFF file format. organize them before import. Images can also be archived alongside • In the middle pane is a working area used to select and filter data to The Bio-Formats manifesto provides a thorough explanation and the import process, allowing you to retrieve your untouched image les work on. rationale of the directions taken while creating this library. from the OMERO.server at a later date, and the client's history feature • In the right-hand pane is a tool to work on the selection i.e. rate, tag, allows you to search and review your previous import sessions and then annotate, etc. re-import your images if desired. Viewing Benets For Users: • Allows visualization of 5D images (space, channel, time). There are several software packages that can use Bio-Formats to read Written using Sun Microsystems' Java language, OMERO.importer is cross- • Makes use of the OMERO.server’s Rendering Engine. and write microscopy formats. These include ImageJ, VisBio, OME, OMERO.server also provides a simple to use Google-style search interface platform compatible with all major operating systems, easy to set up, and OMERO.server for quickly finding data in addition to a more complete SQL-like language • Provides high-performance viewing of multidimensional images on VisAD, Endrov and MATLAB. simple to understand. It is built on recognized and robust technologies standard workstations, without requiring installation of high-powered for building reports and other data mining. and makes use of the Bio-Formats imaging package. Benets For Application Developers: OMERO.server combines enterprise database, search, scripting, security, graphics cards. Bio-Formats provides a library to support working with a large and interface technologies and serves as the foundation of our image Benets For Users: Measurement In addition, the server provides exible security mechanisms similar to a number of formats in there own software. The Bio-Formats library data management solution. Together these tools form a highly-scalable, • Easy to set up – one download provides you with a working importer • Draw Regions Of Interest (ROI) on the image: Squares, Ellipses, Polygons, Unix operating system, both in terms of users and groups as well as file provides a common interface to the developer regardless of le cross-platform, cross-language service for remote users allowing them on any platform compatible with Java 1.5. Lines. and directory permissions. format. As the library is improved and new formats added the devel- secure access to images and metadata from any internet connection. • Cross-platform – ideally suited for real world environments with multi- • Creates ROIs across Time and Z-sections. oper can take advantage of these improvements with little eort. Whatever your data dimensions – countless frames, high-resolution ple operating systems and system specs. • Measures the geometry and intensity values of the pixels under the ROI. In the latest release, support has also been added for sending self-scripted • Fire & forget operation – the importer’s queue • Views histogram of the intensity values under the ROI. images, or extensive videos – OMERO.server provides mechanisms for Bio-Formats is open source software licensed under the GNU General algorithms and transformations to where the data is stored rather than function lets you set up your import and then • Exports all results to a spreadsheet. managing your data and discovering new scientic insights. Public License. bringing the data to you, again making the most of your data and time. continue with your day. Server Features • Robust le format support – over thirty dier- Display of Plates of HCS data, shown below, is currently in testing and we • Hibernate Query Language – All data in the server is queryable via HQL. ent formats supports and still growing! hope to include it in the next major release. Simpler than SQL, HQL provides powerful mining capabilities while free- Benets For System Administration: Digital ing the developer from low-level details like security and individual eld LEGEND loading. • Based on robust, open-source tools. Image Metadata Raw Metadata Metadata e • Stateful Services – In addition to storing data in the database, the • Ease of operation and cross-platform nature ta Acquisition c Data Metadata a y System server can remember settings and given state over the course of multi- means less training and technical support issues. t els esen etad x penness r ple sessions. • Ideal for use “at the work station” – where image data is collected. i M O P Utili Quantitative # Format Extensions P Analysis • Row-level Security – Each entry in the database is protected by both a READ and WRITE flag for USER, GROUP, and OTHER. 1. Adobe Photoshop PSD .psd • Audit Trail – All interactions with the server are recorded in “Events” 2. Alicona 3D .al3d which can be examined by the system administrator. 3. Amersham Biosciences GEL .gel • Database Versioning – Each version of the OMERO database comes 4. Andor Bio-Imaging Division (ABD) TIFF .tif with all necessary upgrade scripts for safely moving your data from OMERO.server previous supported versions. 5. Animated PNG .png 6. Aperio SVS TIFF .svs Support is also provided for: Data Management, 7. AVI (Audio Video Interleave) .avi • Structured Annotations – Attach your own data to objects in OMERO Written using Sun Microsystems’ Java language, OMERO.insight is cross- Tagging, 8. Becker & Hickl SPCImage .sdt Querying • Scripting – Tools for running custom analysis and integration with platform compatible with all major operating systems, easy to set up, and CellProfiler simple to understand. It is built on recognized and robust technologies 9. Bio-Rad PIC .pic such as JHotdraw, a drawing library and the JBoss transactional framework. 10. Bitplane Imaris .ims Processed Metadata Metadata Visualisation Metadata Data Metadata It was built in collaboration with OME’s design ethnography team Usable 11. BMP (Windows Bitmap) .bmp Image. 12. DeltaVision .dv, .r3d google: OMERO.server http://www.openmicroscopy.org/info/OMERO.server Benets For Users: 13. DICOM .dcm, .dicom • Easy to set up – one download provides you with a working importer on any platform compatible with Java 1.5. 14. EPS (Encapsulated PostScript) .eps • Cross-platform – ideally suited for real world environments with multi- 15. Evotec Flex ple operating systems and system specs. 16. FEI .img • Remote access – manipulate, view data without sitting at the worksta- google: OMERO.importer http://www.openmicroscopy.org/info/OMERO.importer 17. FITS (Flexible Image Transport System) tions e.g. from your oce, in the lab, or your favourite internet cafe. OME Data Model OMERO.web 18. Gatan Digital Micrograph .dm3 Benets For System Administration: 19. GIF (Graphics Interchange Format) .gif • Based on robust, open-source tools. The OME Data Model was devised to allow the interchange of microscope OMERO.web client is a rich internet application that allows for the manage- • Ease of operation and cross-platform nature means less training and 20. Hamamatsu Aquacosmos NAF .naf data. It is an open standard providing a rich description of image metadata. OME Software Downloads ment, viewing, attachment, and association of les to images, datasets, technical support issues. 21. ICS (Image Cytometry Standard) .ics and projects. This includes a fully multidimensional image viewer running Information contained within the model can include: OME top level inside your web browser.
Load more

Recommended publications
  • Metadefender Core V4.12.2
    MetaDefender Core v4.12.2 © 2018 OPSWAT, Inc. All rights reserved. OPSWAT®, MetadefenderTM and the OPSWAT logo are trademarks of OPSWAT, Inc. All other trademarks, trade names, service marks, service names, and images mentioned and/or used herein belong to their respective owners. Table of Contents About This Guide 13 Key Features of Metadefender Core 14 1. Quick Start with Metadefender Core 15 1.1. Installation 15 Operating system invariant initial steps 15 Basic setup 16 1.1.1. Configuration wizard 16 1.2. License Activation 21 1.3. Scan Files with Metadefender Core 21 2. Installing or Upgrading Metadefender Core 22 2.1. Recommended System Requirements 22 System Requirements For Server 22 Browser Requirements for the Metadefender Core Management Console 24 2.2. Installing Metadefender 25 Installation 25 Installation notes 25 2.2.1. Installing Metadefender Core using command line 26 2.2.2. Installing Metadefender Core using the Install Wizard 27 2.3. Upgrading MetaDefender Core 27 Upgrading from MetaDefender Core 3.x 27 Upgrading from MetaDefender Core 4.x 28 2.4. Metadefender Core Licensing 28 2.4.1. Activating Metadefender Licenses 28 2.4.2. Checking Your Metadefender Core License 35 2.5. Performance and Load Estimation 36 What to know before reading the results: Some factors that affect performance 36 How test results are calculated 37 Test Reports 37 Performance Report - Multi-Scanning On Linux 37 Performance Report - Multi-Scanning On Windows 41 2.6. Special installation options 46 Use RAMDISK for the tempdirectory 46 3. Configuring Metadefender Core 50 3.1. Management Console 50 3.2.
    [Show full text]
  • Metadefender Core V4.13.1
    MetaDefender Core v4.13.1 © 2018 OPSWAT, Inc. All rights reserved. OPSWAT®, MetadefenderTM and the OPSWAT logo are trademarks of OPSWAT, Inc. All other trademarks, trade names, service marks, service names, and images mentioned and/or used herein belong to their respective owners. Table of Contents About This Guide 13 Key Features of Metadefender Core 14 1. Quick Start with Metadefender Core 15 1.1. Installation 15 Operating system invariant initial steps 15 Basic setup 16 1.1.1. Configuration wizard 16 1.2. License Activation 21 1.3. Scan Files with Metadefender Core 21 2. Installing or Upgrading Metadefender Core 22 2.1. Recommended System Requirements 22 System Requirements For Server 22 Browser Requirements for the Metadefender Core Management Console 24 2.2. Installing Metadefender 25 Installation 25 Installation notes 25 2.2.1. Installing Metadefender Core using command line 26 2.2.2. Installing Metadefender Core using the Install Wizard 27 2.3. Upgrading MetaDefender Core 27 Upgrading from MetaDefender Core 3.x 27 Upgrading from MetaDefender Core 4.x 28 2.4. Metadefender Core Licensing 28 2.4.1. Activating Metadefender Licenses 28 2.4.2. Checking Your Metadefender Core License 35 2.5. Performance and Load Estimation 36 What to know before reading the results: Some factors that affect performance 36 How test results are calculated 37 Test Reports 37 Performance Report - Multi-Scanning On Linux 37 Performance Report - Multi-Scanning On Windows 41 2.6. Special installation options 46 Use RAMDISK for the tempdirectory 46 3. Configuring Metadefender Core 50 3.1. Management Console 50 3.2.
    [Show full text]
  • Image Formats
    Image Formats Ioannis Rekleitis Many different file formats • JPEG/JFIF • Exif • JPEG 2000 • BMP • GIF • WebP • PNG • HDR raster formats • TIFF • HEIF • PPM, PGM, PBM, • BAT and PNM • BPG CSCE 590: Introduction to Image Processing https://en.wikipedia.org/wiki/Image_file_formats 2 Many different file formats • JPEG/JFIF (Joint Photographic Experts Group) is a lossy compression method; JPEG- compressed images are usually stored in the JFIF (JPEG File Interchange Format) >ile format. The JPEG/JFIF >ilename extension is JPG or JPEG. Nearly every digital camera can save images in the JPEG/JFIF format, which supports eight-bit grayscale images and 24-bit color images (eight bits each for red, green, and blue). JPEG applies lossy compression to images, which can result in a signi>icant reduction of the >ile size. Applications can determine the degree of compression to apply, and the amount of compression affects the visual quality of the result. When not too great, the compression does not noticeably affect or detract from the image's quality, but JPEG iles suffer generational degradation when repeatedly edited and saved. (JPEG also provides lossless image storage, but the lossless version is not widely supported.) • JPEG 2000 is a compression standard enabling both lossless and lossy storage. The compression methods used are different from the ones in standard JFIF/JPEG; they improve quality and compression ratios, but also require more computational power to process. JPEG 2000 also adds features that are missing in JPEG. It is not nearly as common as JPEG, but it is used currently in professional movie editing and distribution (some digital cinemas, for example, use JPEG 2000 for individual movie frames).
    [Show full text]
  • Forcepoint DLP Supported File Formats and Size Limits
    Forcepoint DLP Supported File Formats and Size Limits Supported File Formats and Size Limits | Forcepoint DLP | v8.8.1 This article provides a list of the file formats that can be analyzed by Forcepoint DLP, file formats from which content and meta data can be extracted, and the file size limits for network, endpoint, and discovery functions. See: ● Supported File Formats ● File Size Limits © 2021 Forcepoint LLC Supported File Formats Supported File Formats and Size Limits | Forcepoint DLP | v8.8.1 The following tables lists the file formats supported by Forcepoint DLP. File formats are in alphabetical order by format group. ● Archive For mats, page 3 ● Backup Formats, page 7 ● Business Intelligence (BI) and Analysis Formats, page 8 ● Computer-Aided Design Formats, page 9 ● Cryptography Formats, page 12 ● Database Formats, page 14 ● Desktop publishing formats, page 16 ● eBook/Audio book formats, page 17 ● Executable formats, page 18 ● Font formats, page 20 ● Graphics formats - general, page 21 ● Graphics formats - vector graphics, page 26 ● Library formats, page 29 ● Log formats, page 30 ● Mail formats, page 31 ● Multimedia formats, page 32 ● Object formats, page 37 ● Presentation formats, page 38 ● Project management formats, page 40 ● Spreadsheet formats, page 41 ● Text and markup formats, page 43 ● Word processing formats, page 45 ● Miscellaneous formats, page 53 Supported file formats are added and updated frequently. Key to support tables Symbol Description Y The format is supported N The format is not supported P Partial metadata
    [Show full text]
  • Metadefender Core V4.17.3
    MetaDefender Core v4.17.3 © 2020 OPSWAT, Inc. All rights reserved. OPSWAT®, MetadefenderTM and the OPSWAT logo are trademarks of OPSWAT, Inc. All other trademarks, trade names, service marks, service names, and images mentioned and/or used herein belong to their respective owners. Table of Contents About This Guide 13 Key Features of MetaDefender Core 14 1. Quick Start with MetaDefender Core 15 1.1. Installation 15 Operating system invariant initial steps 15 Basic setup 16 1.1.1. Configuration wizard 16 1.2. License Activation 21 1.3. Process Files with MetaDefender Core 21 2. Installing or Upgrading MetaDefender Core 22 2.1. Recommended System Configuration 22 Microsoft Windows Deployments 22 Unix Based Deployments 24 Data Retention 26 Custom Engines 27 Browser Requirements for the Metadefender Core Management Console 27 2.2. Installing MetaDefender 27 Installation 27 Installation notes 27 2.2.1. Installing Metadefender Core using command line 28 2.2.2. Installing Metadefender Core using the Install Wizard 31 2.3. Upgrading MetaDefender Core 31 Upgrading from MetaDefender Core 3.x 31 Upgrading from MetaDefender Core 4.x 31 2.4. MetaDefender Core Licensing 32 2.4.1. Activating Metadefender Licenses 32 2.4.2. Checking Your Metadefender Core License 37 2.5. Performance and Load Estimation 38 What to know before reading the results: Some factors that affect performance 38 How test results are calculated 39 Test Reports 39 Performance Report - Multi-Scanning On Linux 39 Performance Report - Multi-Scanning On Windows 43 2.6. Special installation options 46 Use RAMDISK for the tempdirectory 46 3.
    [Show full text]
  • IDOL Keyview Viewing SDK 12.7 Programming Guide
    KeyView Software Version 12.7 Viewing SDK Programming Guide Document Release Date: October 2020 Software Release Date: October 2020 Viewing SDK Programming Guide Legal notices Copyright notice © Copyright 2016-2020 Micro Focus or one of its affiliates. The only warranties for products and services of Micro Focus and its affiliates and licensors (“Micro Focus”) are set forth in the express warranty statements accompanying such products and services. Nothing herein should be construed as constituting an additional warranty. Micro Focus shall not be liable for technical or editorial errors or omissions contained herein. The information contained herein is subject to change without notice. Documentation updates The title page of this document contains the following identifying information: l Software Version number, which indicates the software version. l Document Release Date, which changes each time the document is updated. l Software Release Date, which indicates the release date of this version of the software. To check for updated documentation, visit https://www.microfocus.com/support-and-services/documentation/. Support Visit the MySupport portal to access contact information and details about the products, services, and support that Micro Focus offers. This portal also provides customer self-solve capabilities. It gives you a fast and efficient way to access interactive technical support tools needed to manage your business. As a valued support customer, you can benefit by using the MySupport portal to: l Search for knowledge documents of interest l Access product documentation l View software vulnerability alerts l Enter into discussions with other software customers l Download software patches l Manage software licenses, downloads, and support contracts l Submit and track service requests l Contact customer support l View information about all services that Support offers Many areas of the portal require you to sign in.
    [Show full text]
  • Introduction to Multimedia
    1 1 UNIT I INTRODUCTION TO MULTIMEDIA Unit Structure 1.1 Objectives 1.2 Introduction 1.3 What is Multimedia? 1.3.1 Multimedia Presentation and Production 1.3.2 Characteristics of Multimedia Presentation 1.3.2.1 Multiple Media 1.3.2.2 Non-linearity 1.3.3.3 Scope of Interactivity 1.3.3.4 Integrity 1.3.3.5 Digital Representation 1.4 Defining the Scope of Multimedia 1.5 Applications of Multimedia 1.6 Hardware and Software Requirements 1.7 Summary 1.8 Unit End Exercises 1.1 OBJECTIVES After studying this Unit, you will be able to: 1. Define Multimedia 2. Define the scope and applications of multimedia 3. Distinguish between Multimedia Presentation and Production 4. Understand how a multimedia presentation is created 1.2 INTRODUCTION Multimedia refers to content that uses a combination of different content forms. This contrasts with media that use only rudimentary computer displays such as text-only or traditional forms of printed or hand-produced material. Multimedia includes a 2 combination of text, audio, still images, animation, video, or interactivity content forms. Multimedia is usually recorded and played, displayed, or accessed by information content processing devices, such as computerized and electronic devices, but can also be part of a live performance. Multimedia devices are electronic media devices used to store and experience multimedia content. Multimedia is distinguished from mixed media in fine art; by including audio, for example, it has a broader scope. The term "rich media" is synonymous for interactive multimedia. Hypermedia can be considered one particular multimedia application.
    [Show full text]
  • Us 2018 / 0372768 A1
    US 20180372768A1 ( 19) United States (12 ) Patent Application Publication ( 10) Pub . No. : US 2018 /0372768 A1 Bryant et al. (43 ) Pub . Date : Dec . 27 , 2018 (54 ) METHODS OF AUTOMATIZED SAMPLE Publication Classification LOADING AND PROCESSING AND DEVICES (51 ) Int. CI. AND SYSTEMS RELATED THERETO GOIN 35 / 10 (2006 . 01) GOIN 35 /00 (2006 . 01) (71 ) Applicant: Abbott Molecular Inc. , Des Plaines, IL ( 52 ) U . S . CI. (US ) CPC . GOIN 35 / 1083 ( 2013 .01 ) ; GOIN 35 /00732 ( 72 ) Inventors: Jason E . Bryant, Eliot, ME ( US) ; ( 2013 . 01 ) ; GOIN 35 / 1079 ( 2013 .01 ) ; GOIN Brett W . Johnson , Naperville , IL (US ) ; 2035/ 00752 (2013 . 01 ) ; GOIN 35/ 1065 Richard J . Schoon , Southborough , MA ( 2013 .01 ) (US ) (21 ) Appl. No. : 16/ 013 ,758 ( 57 ) ABSTRACT Provided are methods for the automated loading and / or (22 ) Filed : Jun . 20 , 2018 automatic processing of one or more samples in an auto mated sample processing device . Also provided are auto Related U . S . Application Data mated sample loading systems and devices that include (60 ) Provisional application No . 62 / 523 ,058 , filed on Jun . automated sample loading systems or devices that are uti 21 , 2017 lized in such systems. ¡Rack Y- Motion Inside Instrument -: 0000000000 - Sample Racks 102 AAAOOOOOO 00000000000 00000000000 ooooooooooo 100000000000 1000000OOOOO ooooooooo0001 ooooooooOOOO SloooooOOOOOOO SOO00000000001 101 X -Motion | Imaging i Camera - - - - - - 108 107 User Access Sample Foldable Exterior : Barrier Rack ! Sample Rack 1 Present ! Loading Shelf ; - 106 Sensor Loading Shelf 00000000001 Position Sensor 2 3 4 5 6 7 8 9 10 11 12 Sample Rack Lane Patent Application Publication Dec . 27 , 2018 Sheet 1 of 12 US 2018 /0372768 A1 FIG .
    [Show full text]
  • Book VI Image
    b bb bbb bbbbon.com bbbb Basic Photography in 180 Days Book VI - Image Editor: Ramon F. aeroramon.com Contents 1 Day 1 1 1.1 Visual arts ............................................... 1 1.1.1 Education and training .................................... 1 1.1.2 Drawing ............................................ 1 1.1.3 Painting ............................................ 3 1.1.4 Printmaking .......................................... 5 1.1.5 Photography .......................................... 5 1.1.6 Filmmaking .......................................... 6 1.1.7 Computer art ......................................... 6 1.1.8 Plastic arts .......................................... 6 1.1.9 United States of America copyright definition of visual art .................. 7 1.1.10 See also ............................................ 7 1.1.11 References .......................................... 9 1.1.12 Bibliography ......................................... 9 1.1.13 External links ......................................... 10 1.2 Image ................................................. 20 1.2.1 Characteristics ........................................ 21 1.2.2 Imagery (literary term) .................................... 21 1.2.3 Moving image ......................................... 22 1.2.4 See also ............................................ 22 1.2.5 References .......................................... 23 1.2.6 External links ......................................... 23 2 Day 2 24 2.1 Digital image ............................................
    [Show full text]
  • Imageio Documentation Release 2.9.0
    imageio Documentation Release 2.9.0 imageio contributors Sep 08, 2021 CONTENTS 1 Getting started 3 1.1 Installing imageio............................................3 1.2 Bird’s eye view on ImageIO.......................................3 1.3 Imageio Usage Examples........................................4 1.4 ImageResources............................................. 10 1.5 Imageio Standard Images........................................ 12 1.6 Imageio command line scripts...................................... 13 1.7 Imageio environment variables...................................... 13 1.8 Upgrading to ImageIO.......................................... 14 2 Supported Formats 15 2.1 Known Formats............................................. 15 2.2 Formats by Plugin............................................ 32 3 API Reference 35 3.1 Core API (Basic Usage)......................................... 35 3.2 Plugins & Backend Libraries (Advanced Usage)............................ 42 4 Developer documentation 59 4.1 Imageio’s developer API......................................... 59 4.2 Creating ImageIO Plugins........................................ 59 4.3 Developer Installation.......................................... 63 Python Module Index 65 Index 67 i ii imageio Documentation, Release 2.9.0 Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, volumetric data, and scientific formats. It is cross-platform, runs on Python 3.5+, and iseasyto install. Main website:
    [Show full text]
  • An Medical Image File Formats and Digital Image Conversion
    International Journal of Engineering and Advanced Technology (IJEAT) ISSN: 2249 – 8958, Volume-9 Issue-1S4, December 2019 An Medical Image File Formats and Digital Image Conversion P. Sriramakrishnan, T. Kalaiselvi, S.T. Padmapriya, N. Shanthi, S. Ramkumar, N. Kalaichelvi and equipment setting. Medical image data was aligned in the Abstract: Medical image file formats make the confusing form of an array of picture element called as the pixel in two aspect to young researchers who start work with medical images. dimensional and voxel in three dimensional [2]. Medical image format conversion is still a tedious task due to the different structure of files. Digital image conversion from the Image format describes the standardized procedure to store medical image is an important pre-processing step to the process the data inside an image. Medical image dataset contains and visualizes the data. This article presents an overview of the more images to represent the three-dimensional view. major medical image file formats such as Analyze, neuro-imaging Medical image intimates the information about the number of informatics technology initiative (NIFTI), MINC, and digital pixels in the horizontal and vertical direction, number of bits imaging and communications in medicine (DICOM). Then the per pixel and number of images per subject. Further, medical characteristics and strengths of the various formats are discussed. Also the article describes the easiest way of digital image format needs to be converting into digital format for process conversion from medical image format. and visualize the images. Medical image format conversion is Keywords: Medical image, file formats, NIFTI, DICOM, a critical task for researchers that can be done by open source Analyze, file conversion software packages such as Mango, MRIcro, 3D slicer, MicroDicom, etc., [5].
    [Show full text]
  • Metadefender Core V4.13.2
    MetaDefender Core v4.13.2 © 2018 OPSWAT, Inc. All rights reserved. OPSWAT®, MetadefenderTM and the OPSWAT logo are trademarks of OPSWAT, Inc. All other trademarks, trade names, service marks, service names, and images mentioned and/or used herein belong to their respective owners. Table of Contents About This Guide 13 Key Features of Metadefender Core 14 1. Quick Start with Metadefender Core 15 1.1. Installation 15 Operating system invariant initial steps 15 Basic setup 16 1.1.1. Configuration wizard 16 1.2. License Activation 21 1.3. Scan Files with Metadefender Core 21 2. Installing or Upgrading Metadefender Core 22 2.1. Recommended System Requirements 22 System Requirements For Server 22 Browser Requirements for the Metadefender Core Management Console 24 2.2. Installing Metadefender 25 Installation 25 Installation notes 25 2.2.1. Installing Metadefender Core using command line 26 2.2.2. Installing Metadefender Core using the Install Wizard 27 2.3. Upgrading MetaDefender Core 27 Upgrading from MetaDefender Core 3.x 27 Upgrading from MetaDefender Core 4.x 28 2.4. Metadefender Core Licensing 28 2.4.1. Activating Metadefender Licenses 28 2.4.2. Checking Your Metadefender Core License 35 2.5. Performance and Load Estimation 36 What to know before reading the results: Some factors that affect performance 36 How test results are calculated 37 Test Reports 37 Performance Report - Multi-Scanning On Linux 37 Performance Report - Multi-Scanning On Windows 41 2.6. Special installation options 46 Use RAMDISK for the tempdirectory 46 3. Configuring Metadefender Core 50 3.1. Management Console 50 3.2.
    [Show full text]