Ascochyta Blight Caused by Mycosphaerella Pinodes (Berk
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Taxonomy and Multigene Phylogenetic Evaluation of Novel Species in Boeremia and Epicoccum with New Records of Ascochyta and Didymella (Didymellaceae)
Mycosphere 8(8): 1080–1101 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/8/9 Copyright © Guizhou Academy of Agricultural Sciences Taxonomy and multigene phylogenetic evaluation of novel species in Boeremia and Epicoccum with new records of Ascochyta and Didymella (Didymellaceae) Jayasiri SC1,2, Hyde KD2,3, Jones EBG4, Jeewon R5, Ariyawansa HA6, Bhat JD7, Camporesi E8 and Kang JC1 1 Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China, Guizhou University, Guiyang, Guizhou Province 550025, P.R. China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3World Agro forestry Centre East and Central Asia Office, 132 Lanhei Road, Kunming 650201, P. R. China 4Botany and Microbiology Department, College of Science, King Saud University, Riyadh, 1145, Saudi Arabia 5Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius 6Department of Plant Pathology and Microbiology, College of BioResources and Agriculture, National Taiwan University, No.1, Sec.4, Roosevelt Road, Taipei 106, Taiwan, ROC. 7No. 128/1-J, Azad Housing Society, Curca, P.O. Goa Velha, 403108, India 89A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy; A.M.B. CircoloMicologico “Giovanni Carini”, C.P. 314, Brescia, Italy; Società per gliStudiNaturalisticidella Romagna, C.P. 144, Bagnacavallo (RA), Italy *Correspondence: [email protected] Jayasiri SC, Hyde KD, Jones EBG, Jeewon R, Ariyawansa HA, Bhat JD, Camporesi E, Kang JC 2017 – Taxonomy and multigene phylogenetic evaluation of novel species in Boeremia and Epicoccum with new records of Ascochyta and Didymella (Didymellaceae). -
Molecular Phylogeny of Phoma and Allied Anamorph Genera: Towards a Reclassification of the Phoma Complex
mycological research 113 (2009) 508–519 journal homepage: www.elsevier.com/locate/mycres Molecular phylogeny of Phoma and allied anamorph genera: Towards a reclassification of the Phoma complex Johannes DE GRUYTERa,b,*, Maikel M. AVESKAMPa, Joyce H. C. WOUDENBERGa, Gerard J. M. VERKLEYa, Johannes Z. GROENEWALDa, Pedro W. CROUSa aCBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands bPlant Protection Service, P.O. Box 9102, 6700 HC Wageningen, The Netherlands article info abstract Article history: The present generic concept of Phoma is broadly defined, with nine sections being recog- Received 2 July 2008 nised based on morphological characters. Teleomorph states of Phoma have been described Received in revised form in the genera Didymella, Leptosphaeria, Pleospora and Mycosphaerella, indicating that Phoma 19 December 2008 anamorphs represent a polyphyletic group. In an attempt to delineate generic boundaries, Accepted 8 January 2009 representative strains of the various Phoma sections and allied coelomycetous genera were Published online 18 January 2009 included for study. Sequence data of the 18S nrDNA (SSU) and the 28S nrDNA (LSU) regions Corresponding Editor: of 18 Phoma strains included were compared with those of representative strains of 39 al- David L. Hawksworth lied anamorph genera, including Ascochyta, Coniothyrium, Deuterophoma, Microsphaeropsis, Pleurophoma, Pyrenochaeta, and 11 teleomorph genera. The type species of the Phoma sec- Keywords: tions Phoma, Phyllostictoides, Sclerophomella, Macrospora and Peyronellaea grouped in a sub- Ascochyta clade in the Pleosporales with the type species of Ascochyta and Microsphaeropsis. The new Coelomycetes family Didymellaceae is proposed to accommodate these Phoma sections and related ana- Coniothyrium morph genera. -
Comparative Mapping of Disease Resistance Genes in Lathyrus Spp
Comparative mapping of disease resistance genes in Lathyrus spp. using model legume genetic information Nuno Felipe Alves de Almeida Dissertation presented to obtain the Ph.D degree in Biology Instituto de Tecnologia Química e Biológica António Xavier | Universidade Nova de Lisboa Oeiras, July, 2015 PhD Supervisors Maria Carlota Vaz Patto, PhD Diego Rubiales, PhD The work presented in this thesis was performed mainly at: Under the supervision of Maria Carlota Vaz Patto, PhD Under the supervision of Diego Rubiales, PhD The student, Nuno Felipe Alves de Almeida received financial support from Fundação para a Ciência e Tecnologia and Fundo Social Europeu in the scope of Quadro Comunitário de Apoio through the PhD Fellowship SFRH/BD/44357/2008. iii ISBN: 978-989-20-5841-2 Table of Contents LIST OF FIGURES .............................................................................. XIII LIST OF TABLES ................................................................................ XV LIST OF ADDITIONAL FILES .............................................................. XVII ACKNOWLEDGMENTS / AGRADECIMENTOS ......................................... XIX RESUMO .......................................................................................... XXI ABSTRACT ...................................................................................... XXV LIST OF ABBREVIATIONS ................................................................. XXIX CHAPTER 1 - GENERAL INTRODUCTION ................................................. 1 1.1. Introduction -
International Legume Society 2015
LEGUME PERSPECTIVES Where the global pulse beats mightiest Echoes of VI IFLRC + VII ICLGG in Saskatoon The journal of the International Legume Society Issue 7 • April 2015 IMPRESSUM ISSN Publishing Director 2340-1559 (electronic issue) Diego Rubiales CSIC, Institute for Sustainable Agriculture Quarterly publication Córdoba, Spain January, April, July and October [email protected] (additional issues possible) Editor-in-Chief Published by Carlota Vaz Patto International Legume Society (ILS) Instituto de Tecnologia Química e Biológica António Xavier (Universidade Nova de Lisboa) Co-published by Oeiras, Portugal CSIC, Institute for Sustainable Agriculture, Córdoba, Spain [email protected] Instituto de Tecnologia Química e Biológica António Xavier (Universidade Nova de Lisboa), Oeiras, Portugal Technical Editor Institute of Field and Vegetable Crops, Novi Sad, Serbia Aleksandar Mikić Institute of Field and Vegetable Crops Office and subscriptions Novi Sad, Serbia CSIC, Institute for Sustainable Agriculture [email protected] International Legume Society Apdo. 4084, 14080 Córdoba, Spain Front cover art: Phone: +34957499215 • Fax: +34957499252 EELG: Earth ElectroLegumoGram [email protected] by Aleksandar Mikić Assistant Editors Mike Ambrose Ramakrishnan Nair John Innes Centre, Norwich, UK AVRDC - The World Vegetable Center, Shanhua, Taiwan Paolo Annicchiarico Pádraig O‟Kiely Consiglio per la Ricerca e la Sperimentazione in Agricoltura, Teagasc, Grange, Ireland Centro di Ricerca per le Produzioni Foraggere e Lattiero-Casearie, -
Challenges with Managing Disease Complexes During Application Of
Challenges with Managing Disease Complexes during Application of Different Measures Against Foliar Diseases of Field Pea Martin John Barbetti, Tanveer N., Ian Pritchard, Jay-Ram Lamichhane, Jean-Noël Aubertot, David Camilo Corrales Munoz, Ming Pei You To cite this version: Martin John Barbetti, Tanveer N., Ian Pritchard, Jay-Ram Lamichhane, Jean-Noël Aubertot, et al.. Challenges with Managing Disease Complexes during Application of Different Measures Against Foliar Diseases of Field Pea. Plant Disease, American Phytopathological Society, In press, 30 p. hal-02937483 HAL Id: hal-02937483 https://hal.inrae.fr/hal-02937483 Submitted on 14 Sep 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Page 1 of 29 Challenges with Managing Disease Complexes during Application of Different Measures Against Foliar Diseases of Field Pea Martin J. Barbetti 1,†, Tanveer N. Khan 1, Ian Pritchard 2, Jay Ram Lamichhane 3, Jean-Noël Aubertot 3, David Camilo Corrales 3, Ming Pei You 1 1 School of Agriculture and Environment and UWA Institute of Agriculture, seeking The University of Western Australia, WA, 6009, Australia 2 Department of Primary Industry and Regional Development, Northam, WA 6401, Australia 3 INRAE, Université Fédérale de Toulouse, UMR AGIR, CS52627, F-31326 Castanet-Tolosan Cedex, France † Corresponding author: M.J. -
A Polyphasic Approach to Characterise Phoma and Related Pleosporalean Genera
available online at www.studiesinmycology.org StudieS in Mycology 65: 1–60. 2010. doi:10.3114/sim.2010.65.01 Highlights of the Didymellaceae: A polyphasic approach to characterise Phoma and related pleosporalean genera M.M. Aveskamp1, 3*#, J. de Gruyter1, 2, J.H.C. Woudenberg1, G.J.M. Verkley1 and P.W. Crous1, 3 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Dutch Plant Protection Service (PD), Geertjesweg 15, 6706 EA Wageningen, The Netherlands; 3Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands *Correspondence: Maikel M. Aveskamp, [email protected] #Current address: Mycolim BV, Veld Oostenrijk 13, 5961 NV Horst, The Netherlands Abstract: Fungal taxonomists routinely encounter problems when dealing with asexual fungal species due to poly- and paraphyletic generic phylogenies, and unclear species boundaries. These problems are aptly illustrated in the genus Phoma. This phytopathologically significant fungal genus is currently subdivided into nine sections which are mainly based on a single or just a few morphological characters. However, this subdivision is ambiguous as several of the section-specific characters can occur within a single species. In addition, many teleomorph genera have been linked to Phoma, three of which are recognised here. In this study it is attempted to delineate generic boundaries, and to come to a generic circumscription which is more correct from an evolutionary point of view by means of multilocus sequence typing. Therefore, multiple analyses were conducted utilising sequences obtained from 28S nrDNA (Large Subunit - LSU), 18S nrDNA (Small Subunit - SSU), the Internal Transcribed Spacer regions 1 & 2 and 5.8S nrDNA (ITS), and part of the β-tubulin (TUB) gene region. -
Functional Characterization of Polyketide-Derived
FUNCTIONAL CHARACTERIZATION OF POLYKETIDE-DERIVED SECONDARY METABOLITES SOLANAPYRONES PRODUCED BY THE CHICKPEA BLIGHT PATHOGEN, ASCOCHYTA RABIEI: GENETICS AND CHEMICAL ECOLOGY By WONYONG KIM A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY WASHINGTON STATE UNIVERSITY Department of Plant Pathology AUGUST 2015 To the Faculty of Washington State University: The members of the Committee appointed to examine the dissertation of WONYONG KIM find it satisfactory and recommend that it be accepted ___________________________________ Weidong Chen, Ph.D., Chair ___________________________________ Tobin L. Peever, Ph.D. ___________________________________ George J. Vandemark, Ph.D. ___________________________________ Lee A. Hadwiger, Ph.D. ___________________________________ Ming Xian, Ph.D. ii ACKNOWLEDGEMENTS I take this opportunity to thank my major advisor, Dr. Weidong Chen. I have learned a tremendous amount from him in framing hypothesis and critical thinking in science. He gave me every possible opportunity to attend conferences to present my research and interact with scientific communities. I would also like to thank my committee members Drs. Tobin L. Peever, George J. Va ndemark, Lee A. Hadwiger and Ming Xian for their open-door policy when questions arose and for giving me ideas and suggestions that helped develop this dissertation research. I am very fortunate to have such a nice group of committee members who are experts each in their own fields such as Systematics, Genetics, Molecular Biology and Chemistry. Without their expertise and helps the research presented in this dissertation could not have been carried out. I thank to Drs. Jeong-Jin Park and Chung-Min Park for long term collaboration during my doctoral study and being as good friends. -
Use of Metabolomics for the Chemotaxonomy of Legume
www.nature.com/scientificreports OPEN Use of metabolomics for the chemotaxonomy of legume- associated Ascochyta and allied Received: 11 October 2015 Accepted: 23 December 2015 genera Published: 05 February 2016 Wonyong Kim1, Tobin L. Peever1, Jeong-Jin Park2, Chung-Min Park3, David R. Gang2, Ming Xian3, Jenny A. Davidson4, Alessandro Infantino5, Walter J. Kaiser6 & Weidong Chen1,7 Chemotaxonomy and the comparative analysis of metabolic features of fungi have the potential to provide valuable information relating to ecology and evolution, but have not been fully explored in fungal biology. Here, we investigated the chemical diversity of legume-associated Ascochyta and Phoma species and the possible use of a metabolomics approach using liquid chromatography-mass spectrometry for their classification. The metabolic features of 45 strains including 11 known species isolated from various legumes were extracted, and the datasets were analyzed using chemometrics methods such as principal component and hierarchical clustering analyses. We found a high degree of intra-species consistency in metabolic profiles, but inter-species diversity was high. Molecular phylogenies of the legume-associated Ascochyta/Phoma species were estimated using sequence data from three protein-coding genes and the five major chemical groups that were detected in the hierarchical clustering analysis were mapped to the phylogeny. Clusters based on similarity of metabolic features were largely congruent with the species phylogeny. These results indicated that evolutionarily distinct fungal lineages have diversified their metabolic capacities as they have evolved independently. This whole metabolomics approach may be an effective tool for chemotaxonomy of fungal taxa lacking information on their metabolic content. Many species in the fungal genera Ascochyta and Phoma are recognized as primary or opportunistic pathogens on different plants of agricultural and economical importance, including some notorious pathogens with quar- antine status1. -
Phoma Koolunga Davidson, Hartley, Priest, Krysinska- Kaczmarek, Herdina, Mckay & Scott DEC09 Australia
DEC09Pathogen of the month – December 2009 Fig. 1. Ascochyta blight symptoms on field peas artificially inoculated with conidia of Phoma koolunga (a); Culture of Phoma koolunga grown on PDA (b); Conidia of Phoma koolunga (c). Photo credits: Jenny Davidson, South Australia. Disease: Ascochyta blight complex of field peas Classification: K: Fungi, D: Ascomycota, C: Euascomycetes, O: Pleosporales, F: Pleosporaceae. Ascochyta blight (synonym: blackspot) is the most serious disease of field peas world wide and is caused by a complex of fungi. Phoma koolunga has recently been identified as part of this complex in South Australia. Major gene resistance has not been detected and fungicides are often uneconomic. Disease control is dependent on agronomic measures such as delayed sowing and wide rotations. The Pathogen: Phoma koolunga was first Host Range: Field peas (Pisum sativum) are the described by Davidson et al (2009) in South major host while in glasshouse conditions symptoms Australia, and causes typical ascochyta blight can be produced on some cultivars of Medicago symptoms on field peas. littoralis, M. scutella and Lens culinaris. On malt agar the colony has white to pale Impact: P. koolunga has been associated with gray aerial mycelium, or is occasionally dark Davidson, Hartley, Priest, Krysinska- severe ascochyta blight symptoms in naturally olivaceous with little or no aerial mycelium, infected peas in the field. In glasshouse inoculated reverse yellow-brown to olivaceous. Pycnidia trials the symptoms are indistinguishable from those (150–210 µm diameter) are scattered over the caused by M. pinodes. All the causal agents of agar or immersed. Conidia are hyaline, ascochyta blight on field peas can usually be ellipsoidal to oblong, 12.5–17x 5–7 µm, mostly detected within one paddock and are often all aseptate. -
Sgt. Legume Science Joint Club Band Merging Knowledge on Diverse Legume Research Topics
LEGUME PERSPECTIVES Sgt. Legume Science Joint Club Band Merging knowledge on diverse legume research topics The journal of the International Legume Society Issue 8 • July 2015 IMPRESSUM ISSN Publishing Director 2340-1559 (electronic issue) Diego Rubiales CSIC, Institute for Sustainable Agriculture Quarterly publication Córdoba, Spain January, April, July and October [email protected] (additional issues possible) Editor-in-Chief Published by Carlota Vaz Patto International Legume Society (ILS) Instituto de Tecnologia Química e Biológica António Xavier Co-published by (Universidade Nova de Lisboa) CSIC, Institute for Sustainable Agriculture, Córdoba, Spain Oeiras, Portugal Instituto de Tecnologia Química e Biológica António Xavier [email protected] (Universidade Nova de Lisboa), Oeiras, Portugal Technical Editor Institute of Field and Vegetable Crops, Novi Sad, Serbia Aleksandar Mikić Office and subscriptions Institute of Field and Vegetable Crops CSIC, Institute for Sustainable Agriculture Novi Sad, Serbia International Legume Society [email protected] Apdo. 4084, 14080 Córdoba, Spain Front cover art: Phone: +34957499215 • Fax: +34957499252 Sgt. Legume Science Joint Club Band [email protected] by Aleksandar MikićA Assistant Editors Mike Ambrose Ramakrishnan Nair John Innes Centre, Norwich, UK AVRDC - The World Vegetable Center, Shanhua, Taiwan Paolo Annicchiarico Pádraig O‟Kiely Consiglio per la Ricerca e la Sperimentazione in Agricoltura, Teagasc, Grange, Ireland Centro di Ricerca per le Produzioni Foraggere -
The Identity of a Pea Blight Fungus in South Africa *
183 Both alia 9, 1:183-194. The Identity of a Pea Blight Fungus in South Africa * by K. T. van W armelo Plant Protection Research Institute, Pretoria A b st r a c t The perfect stage of Ascochyta pinodes (Berk. & Blox.) Jones, a cause of pea blight in Natal, was compared with type material of Sphaeria pinodes Berk, and Blox., Mycosphaerella pinodes (Berk. & Blox.) Stone, and DidymeUa pinodes (Berk. & Blox.) Petrak and the development of its ascocarps studied. Two types of ascocarp were found on the material of DidymeUa pinodes, one perithecial and the other ascolocular in structure. The ascocarp of the South African fungus was typically ascolocular in development and construction and similar to that of other species of Mycosphaerella. These ascocarps were identical to those of Sphaeria pinodes and Mycosphaerella pinodes and the ascolocular ascocarps o f the DidymeUa pinodes material. In development and morphology this fungus agrees more closely with the original generic concepts of the genus Mycosphaerella Joh. than with DidymeUa Sacc. and should thus be named Mycosphaerella pinodes (Berk. & Blox.) Stone. I ntroduction While investigating pea blight in Natal, it was noticed that an anomaly existed concerning the identity of Mycosphaerella pinodes (Berk. & Blox.) Stone, one of the three causal organisms listed by Doidge, Bottomley, van der Plank and Pauer (1952). No paraphyses could be seen in the ascocarps found on overwintered straw but Muller and von Arx (1950, 1962) followed Petrak (1924) who transferred this fungus to Didymella Sacc. This latter genus differs from Mycosphaerella Joh. by the presence of interascal paraphyses (Saccardo, 1882b). -
Microbial Symbionts Affect Pisum Sativum Proteome and Metabolome Under Didymella Pinodes Infection
JPROT-02457; No of Pages 15 Journal of Proteomics xxx (2016) xxx–xxx Contents lists available at ScienceDirect Journal of Proteomics journal homepage: www.elsevier.com/locate/jprot Microbial symbionts affect Pisum sativum proteome and metabolome under Didymella pinodes infection G. Desalegn a,1, R. Turetschek b,1, H.-P. Kaul a,S.Wienkoopb,⁎ a University of Natural Resources and Life Sciences, Department of Crop Sciences, Austria b University of Vienna, Department of Ecogenomics and Systems Biology, Austria article info abstract Article history: The long cultivation of field pea led to an enormous diversity which, however, seems to hold just little resistance Received 18 December 2015 against the ascochyta blight disease complex. The potential of below ground microbial symbiosis to prime the im- Received in revised form 18 February 2016 mune system of Pisum for an upcoming pathogen attack has hitherto received little attention. This study investi- Accepted 15 March 2016 gates the effect of beneficial microbes on the leaf proteome and metabolome as well as phenotype characteristics Available online xxxx of plants in various symbiont interactions (mycorrhiza, rhizobia, co-inoculation, non-symbiotic) after infestation Keywords: by Didymella pinodes. In healthy plants, mycorrhiza and rhizobia induced changes in RNA metabolism and protein Biotic stress synthesis. Furthermore, metal handling and ROS dampening was affected in all mycorrhiza treatments. The co- Didymella pinodes inoculation caused the synthesis of stress related proteins with concomitant adjustment of proteins involved Field pea in lipid biosynthesis. The plant's disease infection response included hormonal adjustment, ROS scavenging as Mycorrhiza well as synthesis of proteins related to secondary metabolism.