Rajiformes: Rajidae) from Indian Waters
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The Evolutionary Origins of Vertebrate Haematopoiesis: Insights from Non-Vertebrate Chordates
THE EVOLUTIONARY ORIGINS OF VERTEBRATE HAEMATOPOIESIS: INSIGHTS FROM NON-VERTEBRATE CHORDATES A thesis submitted to the University of Manchester for the degree of MPhil Evolutionary Biology in the Faculty of Life Sciences. 2015 PETER E D MILLS 2 LIST OF CONTENTS List of Contents 2 List of Figures 4 List of Abbreviations 5 Abstract 6 Declaration 7 Copyright Statement 7 Introduction 8 Haematopoiesis 11 In gnathostomes 11 In cyclostomes 18 In ascidians 20 In amphioxi 22 In sea urchins 24 In fruit flies 24 The evolution of haematopoiesis 26 Haematopoiesis and innate immune cells 26 Lymphocytes 26 Erythrocytes 27 Aims 28 The basic aim 28 Choice of genes 30 Homologue identification 31 Analysis of EST collections 31 In situ hybridisations 32 gata1/2/3 rescue experiment 34 gata1/2/3 reporter experiment 36 3 Methods 39 Homologue identification 39 Analysis of EST data 39 Collection of amphioxus embryos 40 Collection of ascidian embryos 40 Collection of zebrafish embryos 40 Cloning genes 41 Whole mount in situ hybridisations 41 Knockdown and rescue of gata1 42 gata1/2/3:mCherry reporter 42 Results Homologues in non-gnathostomes 44 Gene expression in ascidian and amphioxus embryos 48 Knockdown of gata1 and rescue with gata1/2/3 51 gata1/2/3:mCherry reporter expression 52 Discussion Non-chordate gene expression 54 Amphioxus gene expression 54 Ascidian gene expression 56 Cyclostome gene expression 59 gata1/2/3 rescue experiment 60 gata1/2/3 reporter experiment 62 Evolution of erythrocytes 63 Evolution of lymphocytes 67 Conclusion 72 References 75 (Word count: 26,246) 4 LIST OF FIGURES Figure 1 – Phylogenetic relationships between the organisms studied in this thesis. -
Age, Growth, and Sexual Maturity of the Deepsea Skate, Bathyraja
AGE, GROWTH, AND SEXUAL MATURITY OF THE DEEPSEA SKATE, BATHYRAJA ABYSSICOLA A Thesis Presented to the Faculty of Alaska Pacific University In Partial Fulfillment of the Requirements For the Degree of Master of Science in Environmental Science by Cameron Murray Provost April 2016 Pro Q u est Nu m b er: 10104548 All rig hts reserv e d INF O RM ATI O N T O ALL USERS Th e q u a lity of this re pro d u ctio n is d e p e n d e nt u p o n th e q u a lity of th e c o p y su b mitt e d. In th e unlik e ly e v e nt th a t th e a uth or did n ot se n d a c o m ple t e m a nuscript a n d th ere are missin g p a g es, th ese will b e n ot e d. Also, if m a t eria l h a d to b e re m o v e d, a n ot e will in dic a t e th e d e le tio n. Pro Q u est 10104548 Pu blish e d b y Pro Q u est LL C (2016). C o p yrig ht of th e Dissert a tio n is h e ld b y th e A uth or. All rig hts reserv e d. This w ork is prot e ct e d a g a inst un a uth orize d c o p yin g un d er Title 17, Unit e d St a t es C o d e Microform Editio n © Pro Q u est LL C . -
Barndoor Skate, Dipturus Laevis, Life History and Habitat Characteristics
NOAA Technical Memorandum NMFS-NE-173 Essential Fish Habitat Source Document: Barndoor Skate, Dipturus laevis, Life History and Habitat Characteristics U. S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service Northeast Region Northeast Fisheries Science Center Woods Hole, Massachusetts March 2003 Recent Issues in This Series: 155. Food of Northwest Atlantic Fishes and Two Common Species of Squid. By Ray E. Bowman, Charles E. Stillwell, William L. Michaels, and Marvin D. Grosslein. January 2000. xiv + 138 p., 1 fig., 7 tables, 2 app. NTIS Access. No. PB2000-106735. 156. Proceedings of the Summer Flounder Aging Workshop, 1-2 February 1999, Woods Hole, Massachusetts. By George R. Bolz, James Patrick Monaghan, Jr., Kathy L. Lang, Randall W. Gregory, and Jay M. Burnett. May 2000. v + 15 p., 5 figs., 5 tables. NTIS Access. No. PB2000-107403. 157. Contaminant Levels in Muscle of Four Species of Recreational Fish from the New York Bight Apex. By Ashok D. Deshpande, Andrew F.J. Draxler, Vincent S. Zdanowicz, Mary E. Schrock, Anthony J. Paulson, Thomas W. Finneran, Beth L. Sharack, Kathy Corbo, Linda Arlen, Elizabeth A. Leimburg, Bruce W. Dockum, Robert A. Pikanowski, Brian May, and Lisa B. Rosman. June 2000. xxii + 99 p., 6 figs., 80 tables, 3 app., glossary. NTIS Access. No. PB2001-107346. 158. A Framework for Monitoring and Assessing Socioeconomics and Governance of Large Marine Ecosystems. By Jon G. Sutinen, editor, with contributors (listed alphabetically) Patricia Clay, Christopher L. Dyer, Steven F. Edwards, John Gates, Tom A. Grigalunas, Timothy Hennessey, Lawrence Juda, Andrew W. Kitts, Philip N. -
Chondrichthyan Fishes (Sharks, Skates, Rays) Announcements
Chondrichthyan Fishes (sharks, skates, rays) Announcements 1. Please review the syllabus for reading and lab information! 2. Please do the readings: for this week posted now. 3. Lab sections: 4. i) Dylan Wainwright, Thursday 2 - 4/5 pm ii) Kelsey Lucas, Friday 2 - 4/5 pm iii) Labs are in the Northwest Building basement (room B141) 4. Lab sections done: first lab this week on Thursday! 5. First lab reading: Agassiz fish story; lab will be a bit shorter 6. Office hours: we’ll set these later this week Please use the course web site: note the various modules Outline Lecture outline: -- Intro. to chondrichthyan phylogeny -- 6 key chondrichthyan defining traits (synapomorphies) -- 3 chondrichthyan behaviors -- Focus on several major groups and selected especially interesting ones 1) Holocephalans (chimaeras or ratfishes) 2) Elasmobranchii (sharks, skates, rays) 3) Batoids (skates, rays, and sawfish) 4) Sharks – several interesting groups Not remotely possible to discuss today all the interesting groups! Vertebrate tree – key ―fish‖ groups Today Chondrichthyan Fishes sharks Overview: 1. Mostly marine 2. ~ 1,200 species 518 species of sharks 650 species of rays 38 species of chimaeras Skates and rays 3. ~ 3 % of all ―fishes‖ 4. Internal skeleton made of cartilage 5. Three major groups 6. Tremendous diversity of behavior and structure and function Chimaeras Chondrichthyan Fishes: 6 key traits Synapomorphy 1: dentition; tooth replacement pattern • Teeth are not fused to jaws • New rows move up to replace old/lost teeth • Chondrichthyan teeth are -
Skates and Rays Diversity, Exploration and Conservation – Case-Study of the Thornback Ray, Raja Clavata
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Doutoramento em Ciências do Mar 2010 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Tese orientada por Professor Auxiliar com Agregação Leonel Serrano Gordo e Investigadora Auxiliar Ivone Figueiredo Doutoramento em Ciências do Mar 2010 The research reported in this thesis was carried out at the Instituto de Investigação das Pescas e do Mar (IPIMAR - INRB), Unidade de Recursos Marinhos e Sustentabilidade. This research was funded by Fundação para a Ciência e a Tecnologia (FCT) through a PhD grant (SFRH/BD/23777/2005) and the research project EU Data Collection/DCR (PNAB). Skates and rays diversity, exploration and conservation | Table of Contents Table of Contents List of Figures ............................................................................................................................. i List of Tables ............................................................................................................................. v List of Abbreviations ............................................................................................................. viii Agradecimentos ........................................................................................................................ -
An Introduction to the Classification of Elasmobranchs
An introduction to the classification of elasmobranchs 17 Rekha J. Nair and P.U Zacharia Central Marine Fisheries Research Institute, Kochi-682 018 Introduction eyed, stomachless, deep-sea creatures that possess an upper jaw which is fused to its cranium (unlike in sharks). The term Elasmobranchs or chondrichthyans refers to the The great majority of the commercially important species of group of marine organisms with a skeleton made of cartilage. chondrichthyans are elasmobranchs. The latter are named They include sharks, skates, rays and chimaeras. These for their plated gills which communicate to the exterior by organisms are characterised by and differ from their sister 5–7 openings. In total, there are about 869+ extant species group of bony fishes in the characteristics like cartilaginous of elasmobranchs, with about 400+ of those being sharks skeleton, absence of swim bladders and presence of five and the rest skates and rays. Taxonomy is also perhaps to seven pairs of naked gill slits that are not covered by an infamously known for its constant, yet essential, revisions operculum. The chondrichthyans which are placed in Class of the relationships and identity of different organisms. Elasmobranchii are grouped into two main subdivisions Classification of elasmobranchs certainly does not evade this Holocephalii (Chimaeras or ratfishes and elephant fishes) process, and species are sometimes lumped in with other with three families and approximately 37 species inhabiting species, or renamed, or assigned to different families and deep cool waters; and the Elasmobranchii, which is a large, other taxonomic groupings. It is certain, however, that such diverse group (sharks, skates and rays) with representatives revisions will clarify our view of the taxonomy and phylogeny in all types of environments, from fresh waters to the bottom (evolutionary relationships) of elasmobranchs, leading to a of marine trenches and from polar regions to warm tropical better understanding of how these creatures evolved. -
Sharks and Rays Back in the North Sea!
SHARKS AND RAYS BACK IN THE NORTH SEA! © Peter Verhoog Juvenile thornback rays ABOUT SHARKS AND RAYS Important for the marine ecosystem Long before we humans walked this earth, beautiful sharks and rays were swimming in the world’s oceans. These apex predators have been at the top of the food chain for 450 million years, where they fulfil a vital role in the ecosystem of the oceans. They ‘maintain’ coral reefs, they ensure the ecological balance between species and they contribute to healthy populations of other animals by eating the weaker individuals. Largescale overfishing of sharks and rays affects the entire food chain and thus the health of the oceans. Low reproductive capacity Sharks and rays are characterized by a low reproductive capacity; many species are only sexually mature after more than 10 years. Most shark species develop their eggs inside the body of the female. Baby sharks are born fully developed. Most sharks have 1 to 20 pups per year. The reproductive biology of sharks is therefore more akin to that of marine mammals than fish. The Dutch North Sea is the habitat of several egg-laying shark species and rays: both the small-spotted catshark and the greater spotted dogfish or nursehound lay 18 to 20 eggs per year. The eggs take 7 to 10 months to hatch. The empty cases often wash up on beaches. Most Dutch bottom-dwelling rays lay eggs, from 20 to 140 eggs per year. Due to their low reproduction cycles, sharks and rays are vulnerable for overfishing, as the recovery of populations is very slow. -
A Systematic Revision of the South American Freshwater Stingrays (Chondrichthyes: Potamotrygonidae) (Batoidei, Myliobatiformes, Phylogeny, Biogeography)
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 1985 A systematic revision of the South American freshwater stingrays (chondrichthyes: potamotrygonidae) (batoidei, myliobatiformes, phylogeny, biogeography) Ricardo de Souza Rosa College of William and Mary - Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Fresh Water Studies Commons, Oceanography Commons, and the Zoology Commons Recommended Citation Rosa, Ricardo de Souza, "A systematic revision of the South American freshwater stingrays (chondrichthyes: potamotrygonidae) (batoidei, myliobatiformes, phylogeny, biogeography)" (1985). Dissertations, Theses, and Masters Projects. Paper 1539616831. https://dx.doi.org/doi:10.25773/v5-6ts0-6v68 This Dissertation is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. INFORMATION TO USERS This reproduction was made from a copy of a document sent to us for microfilming. While the most advanced technology has been used to photograph and reproduce this document, the quality of the reproduction is heavily dependent upon the quality of the material submitted. The following explanation of techniques is provided to help clarify markings or notations which may appear on this reproduction. 1.The sign or “target” for pages apparently lacking from the document photographed is “Missing Pagefs)”. If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting through an image and duplicating adjacent pages to assure complete continuity. -
(Chondrichthyes : Rajidae), Okamejei Mengae from the South China Sea
Korean J. Ichthyol. 19(1), 57~65, 2007 A New Species of Skate (Chondrichthyes : Rajidae), Okamejei mengae from the South China Sea Choong-Hoon Jeong*, Tetsuji Nakabo1 and Han-Ling Wu2 Research Center for Coastal Environments of Yellow Sea, Inha University, Incheon 402-751, Republic of Korea 1The Kyoto University Museum, c/o Division of Applied Biosciences, Kyoto University, Kyoto 606-8501, Japan 2Laboratory of Fishes, Shanghai Fisheries University, 334 Jun Gong Rd., Shanghai, 200090, People’s of Republic of China A new species of the rajid genus Okamejei is described from a single specimen (295 mm TL) from off Shantou, Gwangdong in the South China Sea. The new species differs from all other congeners in the following combination of characters: snout pointed, dorsal head length 6.7 times interorbital width, tail moderately wide and long, its length 48.5% TL, interdorsal distance less than length of first dorsal fin base, postdorsal tail short as 5.8% TL, small evenly distributed dark brownish spots, without ocelli on dorsal surface of disc, pores of ampullae of Lorenzini on ventral surface distributed from snout tip to distal end of metapterygium, scapulocoracoid high, its height about 1.4 times rear corner height, trunk vertebrae 23, predorsal tail vertebrae 50 and pectoral fin radials 96. Key words : New species, Okamejei mengae, Rajidae, South China Sea, Chondri- chthyes size and condition of the anterior margin of the Introduction neurocranial fontanelle. Okamejei was later ele- vated to generic rank by McEachran and Dunn The family Rajidae is cosmopolitan, encompass- (1998). To date, genus Okamejei comprised nine ing about thirty genera and more than 230 nomi- species, three distributed in the Indian Ocean nal species, as well as about 50 undescribed spe- (Stehmann, 1976; Fricke and Al-Hassan, 1995) cies (McEachran and Miyake, 1990a, b; McEach- and six in the western North Pacific (reviewed by ran and Dunn, 1998). -
Florida's Fintastic Sharks and Rays Lesson and Activity Packet
Florida's Fintastic Sharks and Rays An at-home lesson for grades 3-5 Produced by: This educational workbook was produced through the support of the Indian River Lagoon National Estuary Program. 1 What are sharks and rays? Believe it or not, they’re a type of fish! When you think “fish,” you probably picture a trout or tuna, but fishes come in all shapes and sizes. All fishes share the following key characteristics that classify them into this group: Fishes have the simplest of vertebrate hearts with only two chambers- one atrium and one ventricle. The spine in a fish runs down the middle of its back just like ours, making fish vertebrates. All fishes have skeletons, but not all fish skeletons are made out of bones. Some fishes have skeletons made out of cartilage, just like your nose and ears. Fishes are cold-blooded. Cold-blooded animals use their environment to warm up or cool down. Fins help fish swim. Fins come in pairs, like pectoral and pelvic fins or are singular, like caudal or anal fins. Later in this packet, we will look at the different types of fins that fishes have and some of the unique ways they are used. 2 Placoid Ctenoid Ganoid Cycloid Hard protective scales cover the skin of many fish species. Scales can act as “fingerprints” to help identify some fish species. There are several different scale types found in bony fishes, including cycloid (round), ganoid (rectangular or diamond), and ctenoid (scalloped). Cartilaginous fishes have dermal denticles (Placoid) that resemble tiny teeth on their skin. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Checklist of Philippine Chondrichthyes
CSIRO MARINE LABORATORIES Report 243 CHECKLIST OF PHILIPPINE CHONDRICHTHYES Compagno, L.J.V., Last, P.R., Stevens, J.D., and Alava, M.N.R. May 2005 CSIRO MARINE LABORATORIES Report 243 CHECKLIST OF PHILIPPINE CHONDRICHTHYES Compagno, L.J.V., Last, P.R., Stevens, J.D., and Alava, M.N.R. May 2005 Checklist of Philippine chondrichthyes. Bibliography. ISBN 1 876996 95 1. 1. Chondrichthyes - Philippines. 2. Sharks - Philippines. 3. Stingrays - Philippines. I. Compagno, Leonard Joseph Victor. II. CSIRO. Marine Laboratories. (Series : Report (CSIRO. Marine Laboratories) ; 243). 597.309599 1 CHECKLIST OF PHILIPPINE CHONDRICHTHYES Compagno, L.J.V.1, Last, P.R.2, Stevens, J.D.2, and Alava, M.N.R.3 1 Shark Research Center, South African Museum, Iziko–Museums of Cape Town, PO Box 61, Cape Town, 8000, South Africa 2 CSIRO Marine Research, GPO Box 1538, Hobart, Tasmania, 7001, Australia 3 Species Conservation Program, WWF-Phils., Teachers Village, Central Diliman, Quezon City 1101, Philippines (former address) ABSTRACT Since the first publication on Philippines fishes in 1706, naturalists and ichthyologists have attempted to define and describe the diversity of this rich and biogeographically important fauna. The emphasis has been on fishes generally but these studies have also contributed greatly to our knowledge of chondrichthyans in the region, as well as across the broader Indo–West Pacific. An annotated checklist of cartilaginous fishes of the Philippines is compiled based on historical information and new data. A Taiwanese deepwater trawl survey off Luzon in 1995 produced specimens of 15 species including 12 new records for the Philippines and a few species new to science.