Communication Networks in the Brain
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Behavioral Neuroscience Uab Graduate Handbook
Behavioral Neuroscience Ph.D. Program Policies, Guidelines, & Procedures Student Handbook 2021-2022 University of Alabama at Birmingham Table of Contents Mission Statement __________________________________________ 3 History of the Program _______________________________________ 3 Policies and Procedures ______________________________________ 4 Overview of Student Career ___________________________________ 5 Typical Courses ____________________________________________ 5 Progress Reports ___________________________________________ 6 2nd Year Research Project __________________________________ 7 Qualifying Examination _______________________________________ 8 Dissertation ________________________________________________ 10 Behavioral Neuroscience Student Checklist _______________________ 13 Master’s Degree ____________________________________________ 15 Policies Regarding Adequate Progress __________________________ 16 Policies on Remunerated Activities _____________________________ 16 Vacation, Leave, Holiday Guidelines ____________________________ 17 Degree Requirements and Associated Procedures ________________ 18 2 BEHAVIORAL NEUROSCIENCE PROGRAM Mission Statement and History of the Program Mission Statement Behavioral neuroscience is represented by scientists with interests in the physiological and neural substrates of behavior. The mission of the Behavioral Neuroscience Ph.D. program is to produce outstanding young scientists capable of pursuing independent research careers in the field of behavioral neuroscience by providing graduate -
The Creation of Neuroscience
The Creation of Neuroscience The Society for Neuroscience and the Quest for Disciplinary Unity 1969-1995 Introduction rom the molecular biology of a single neuron to the breathtakingly complex circuitry of the entire human nervous system, our understanding of the brain and how it works has undergone radical F changes over the past century. These advances have brought us tantalizingly closer to genu- inely mechanistic and scientifically rigorous explanations of how the brain’s roughly 100 billion neurons, interacting through trillions of synaptic connections, function both as single units and as larger ensem- bles. The professional field of neuroscience, in keeping pace with these important scientific develop- ments, has dramatically reshaped the organization of biological sciences across the globe over the last 50 years. Much like physics during its dominant era in the 1950s and 1960s, neuroscience has become the leading scientific discipline with regard to funding, numbers of scientists, and numbers of trainees. Furthermore, neuroscience as fact, explanation, and myth has just as dramatically redrawn our cultural landscape and redefined how Western popular culture understands who we are as individuals. In the 1950s, especially in the United States, Freud and his successors stood at the center of all cultural expla- nations for psychological suffering. In the new millennium, we perceive such suffering as erupting no longer from a repressed unconscious but, instead, from a pathophysiology rooted in and caused by brain abnormalities and dysfunctions. Indeed, the normal as well as the pathological have become thoroughly neurobiological in the last several decades. In the process, entirely new vistas have opened up in fields ranging from neuroeconomics and neurophilosophy to consumer products, as exemplified by an entire line of soft drinks advertised as offering “neuro” benefits. -
The Baseline Structure of the Enteric Nervous System and Its Role in Parkinson’S Disease
life Review The Baseline Structure of the Enteric Nervous System and Its Role in Parkinson’s Disease Gianfranco Natale 1,2,* , Larisa Ryskalin 1 , Gabriele Morucci 1 , Gloria Lazzeri 1, Alessandro Frati 3,4 and Francesco Fornai 1,4 1 Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, 56126 Pisa, Italy; [email protected] (L.R.); [email protected] (G.M.); [email protected] (G.L.); [email protected] (F.F.) 2 Museum of Human Anatomy “Filippo Civinini”, University of Pisa, 56126 Pisa, Italy 3 Neurosurgery Division, Human Neurosciences Department, Sapienza University of Rome, 00135 Rome, Italy; [email protected] 4 Istituto di Ricovero e Cura a Carattere Scientifico (I.R.C.C.S.) Neuromed, 86077 Pozzilli, Italy * Correspondence: [email protected] Abstract: The gastrointestinal (GI) tract is provided with a peculiar nervous network, known as the enteric nervous system (ENS), which is dedicated to the fine control of digestive functions. This forms a complex network, which includes several types of neurons, as well as glial cells. Despite extensive studies, a comprehensive classification of these neurons is still lacking. The complexity of ENS is magnified by a multiple control of the central nervous system, and bidirectional communication between various central nervous areas and the gut occurs. This lends substance to the complexity of the microbiota–gut–brain axis, which represents the network governing homeostasis through nervous, endocrine, immune, and metabolic pathways. The present manuscript is dedicated to Citation: Natale, G.; Ryskalin, L.; identifying various neuronal cytotypes belonging to ENS in baseline conditions. -
Distance Learning Program Anatomy of the Human Brain/Sheep Brain Dissection
Distance Learning Program Anatomy of the Human Brain/Sheep Brain Dissection This guide is for middle and high school students participating in AIMS Anatomy of the Human Brain and Sheep Brain Dissections. Programs will be presented by an AIMS Anatomy Specialist. In this activity students will become more familiar with the anatomical structures of the human brain by observing, studying, and examining human specimens. The primary focus is on the anatomy, function, and pathology. Those students participating in Sheep Brain Dissections will have the opportunity to dissect and compare anatomical structures. At the end of this document, you will find anatomical diagrams, vocabulary review, and pre/post tests for your students. The following topics will be covered: 1. The neurons and supporting cells of the nervous system 2. Organization of the nervous system (the central and peripheral nervous systems) 4. Protective coverings of the brain 5. Brain Anatomy, including cerebral hemispheres, cerebellum and brain stem 6. Spinal Cord Anatomy 7. Cranial and spinal nerves Objectives: The student will be able to: 1. Define the selected terms associated with the human brain and spinal cord; 2. Identify the protective structures of the brain; 3. Identify the four lobes of the brain; 4. Explain the correlation between brain surface area, structure and brain function. 5. Discuss common neurological disorders and treatments. 6. Describe the effects of drug and alcohol on the brain. 7. Correctly label a diagram of the human brain National Science Education -
Spiking Neural Networks: Neuron Models, Plasticity, and Graph Applications
Virginia Commonwealth University VCU Scholars Compass Theses and Dissertations Graduate School 2015 Spiking Neural Networks: Neuron Models, Plasticity, and Graph Applications Shaun Donachy Virginia Commonwealth University Follow this and additional works at: https://scholarscompass.vcu.edu/etd Part of the Theory and Algorithms Commons © The Author Downloaded from https://scholarscompass.vcu.edu/etd/3984 This Thesis is brought to you for free and open access by the Graduate School at VCU Scholars Compass. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of VCU Scholars Compass. For more information, please contact [email protected]. c Shaun Donachy, July 2015 All Rights Reserved. SPIKING NEURAL NETWORKS: NEURON MODELS, PLASTICITY, AND GRAPH APPLICATIONS A Thesis submitted in partial fulfillment of the requirements for the degree of Master of Science at Virginia Commonwealth University. by SHAUN DONACHY B.S. Computer Science, Virginia Commonwealth University, May 2013 Director: Krzysztof J. Cios, Professor and Chair, Department of Computer Science Virginia Commonwealth University Richmond, Virginia July, 2015 TABLE OF CONTENTS Chapter Page Table of Contents :::::::::::::::::::::::::::::::: i List of Figures :::::::::::::::::::::::::::::::::: ii Abstract ::::::::::::::::::::::::::::::::::::: v 1 Introduction ::::::::::::::::::::::::::::::::: 1 2 Models of a Single Neuron ::::::::::::::::::::::::: 3 2.1 McCulloch-Pitts Model . 3 2.2 Hodgkin-Huxley Model . 4 2.3 Integrate and Fire Model . 6 2.4 Izhikevich Model . 8 3 Neural Coding Techniques :::::::::::::::::::::::::: 14 3.1 Input Encoding . 14 3.1.1 Grandmother Cell and Distributed Representations . 14 3.1.2 Rate Coding . 15 3.1.3 Sine Wave Encoding . 15 3.1.4 Spike Density Encoding . 15 3.1.5 Temporal Encoding . 16 3.1.6 Synaptic Propagation Delay Encoding . -
Cannabinoid Receptors and the Endocannabinoid System: Signaling and Function in the Central Nervous System
International Journal of Molecular Sciences Review Cannabinoid Receptors and the Endocannabinoid System: Signaling and Function in the Central Nervous System Shenglong Zou and Ujendra Kumar * Faculty of Pharmaceutical Sciences, The University of British Columbia, Vancouver, BC V6T 1Z4, Canada; [email protected] * Correspondence: [email protected]; Tel.: +1-604-827-3660; Fax: +1-604-822-3035 Received: 9 February 2018; Accepted: 11 March 2018; Published: 13 March 2018 Abstract: The biological effects of cannabinoids, the major constituents of the ancient medicinal plant Cannabis sativa (marijuana) are mediated by two members of the G-protein coupled receptor family, cannabinoid receptors 1 (CB1R) and 2. The CB1R is the prominent subtype in the central nervous system (CNS) and has drawn great attention as a potential therapeutic avenue in several pathological conditions, including neuropsychological disorders and neurodegenerative diseases. Furthermore, cannabinoids also modulate signal transduction pathways and exert profound effects at peripheral sites. Although cannabinoids have therapeutic potential, their psychoactive effects have largely limited their use in clinical practice. In this review, we briefly summarized our knowledge of cannabinoids and the endocannabinoid system, focusing on the CB1R and the CNS, with emphasis on recent breakthroughs in the field. We aim to define several potential roles of cannabinoid receptors in the modulation of signaling pathways and in association with several pathophysiological conditions. We believe that the therapeutic significance of cannabinoids is masked by the adverse effects and here alternative strategies are discussed to take therapeutic advantage of cannabinoids. Keywords: cannabinoid; endocannabinoid; receptor; signaling; central nervous system 1. Introduction The plant Cannabis sativa, better known as marijuana, has long been used for medical purpose throughout human history. -
Neuron C Reference Guide Iii • Introduction to the LONWORKS Platform (078-0391-01A)
Neuron C Provides reference info for writing programs using the Reference Guide Neuron C programming language. 078-0140-01G Echelon, LONWORKS, LONMARK, NodeBuilder, LonTalk, Neuron, 3120, 3150, ShortStack, LonMaker, and the Echelon logo are trademarks of Echelon Corporation that may be registered in the United States and other countries. Other brand and product names are trademarks or registered trademarks of their respective holders. Neuron Chips and other OEM Products were not designed for use in equipment or systems, which involve danger to human health or safety, or a risk of property damage and Echelon assumes no responsibility or liability for use of the Neuron Chips in such applications. Parts manufactured by vendors other than Echelon and referenced in this document have been described for illustrative purposes only, and may not have been tested by Echelon. It is the responsibility of the customer to determine the suitability of these parts for each application. ECHELON MAKES AND YOU RECEIVE NO WARRANTIES OR CONDITIONS, EXPRESS, IMPLIED, STATUTORY OR IN ANY COMMUNICATION WITH YOU, AND ECHELON SPECIFICALLY DISCLAIMS ANY IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording, or otherwise, without the prior written permission of Echelon Corporation. Printed in the United States of America. Copyright © 2006, 2014 Echelon Corporation. Echelon Corporation www.echelon.com Welcome This manual describes the Neuron® C Version 2.3 programming language. It is a companion piece to the Neuron C Programmer's Guide. -
NEUROSCIENCE Neuroscience the Science of the Brain
InformatIon sheet NEUROSCIENCE Neuroscience The science of the brain “ Everything you think, everything you Neuroscientists study the nervous system. They do, everything you feel, comes from apply a wide range of scientific disciplines: anatomy, biochemistry, computer science, pharmacology, that 2kg of ugly grey matter inside physiology, psychology, and zoology. It’s all about your skull, and if you start from that understanding how the brain and nervous system work, premise, it’s hard not to be curious and it’s one of the fastest growing areas of science. about how that even begins to be The University of Otago is the only New Zealand possible.” university to offer an undergraduate degree in neuroscience. As an interdisciplinary programme, it is Irene Ballagh Neuroscience Graduate taught by staff from a large number of departments. Each teaches a separate “neuro” component – but the result is a coherent, integrated subject in its own right. YoUr PLaCe In the WorLD 0800 80 80 98 www.otago.ac.nz txt 866 [email protected] Why study neuroscience? You can read details about what several How will I study? neuroscience graduates are doing on our The brain is a final frontier… a last great website. Due to the interdisciplinary nature of the unknown. neuroscience programme, teaching styles vary between papers. Many first and second year Neuroscientists are its explorers. They try What papers do I take? papers are taught through a combination to understand how the brain functions, how First year of lectures and laboratory sessions, while it deals with injury or damage, and how it Essential first year papers provide third year papers will have group projects develops and changes over time. -
Build a Neuron
Build a Neuron Objectives: 1. To understand what a neuron is and what it does 2. To understand the anatomy of a neuron in relation to function This activity is great for ALL ages-even college students!! Materials: pipe cleaners (2 full size, 1 cut into 3 for each student) pony beads (6/student Introduction: Little kids: ask them where their brain is (I point to my head and torso areas till they shake their head yes) Talk about legos being the building blocks for a tower and relate that to neurons being the building blocks for your brain and that neurons send messages to other parts of your brain and to and from all your body parts. Give examples: touch from body to brain, movement from brain to body. Neurons are the building blocks of the brain that send and receive messages. Neurons come in all different shapes. Experiment: 1. First build soma by twisting a pipe cleaner into a circle 2. Then put a 2nd pipe cleaner through the circle and bend it over and twist the two strands together to make it look like a lollipop (axon) 3. take 3 shorter pipe cleaners attach to cell body to make dendrites 4. add 6 beads on the axon making sure there is space between beads for the electricity to “jump” between them to send the signal super fast. (myelin sheath) 5. Twist the end of the axon to make it look like 2 feet for the axon terminal. 6. Make a brain by having all of the neurons “talk” to each other (have each student hold their neuron because they’ll just throw them on a table for you to do it.) messages come in through the dendrites and if its a strong enough electrical change, then the cell body sends the Build a Neuron message down it’s axon where a neurotransmitter is released. -
Microglia Control Glutamatergic Synapses in the Adult Mouse Hippocampus
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.01.429096; this version posted February 2, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Microglia control glutamatergic synapses in the adult mouse hippocampus Short title: Microglia and glutamatergic synapses Bernadette Basilico1†*‡, Laura Ferrucci1‡, Patrizia Ratano2‡, Maria T. Golia1, Alfonso Grimaldi3, Maria Rosito3, Valentina Ferretti4, Ingrid Reverte1,5, Maria C. Marrone6, Maria Giubettini3,7, Valeria De Turris3, Debora Salerno3, Stefano Garofalo1, Marie-Kim St-Pierre8, Micael Carrier8, Massimiliano Renzi1, Francesca Pagani3, Marcello Raspa9, Ferdinando Scavizzi9, Cornelius T. Gross10, Silvia Marinelli5, Marie E. Tremblay8,11, Daniele Caprioli1,5, Laura Maggi1, Cristina Limatola1,2, Silvia Di Angelantonio1,3§, Davide Ragozzino1,5*§ 1Department of Physiology and Pharmacology, Sapienza University of Rome, Rome, Italy. 2IRCCS Neuromed, Via Atinese 18, 86077, Pozzilli, IS, Italy. 3Center for Life Nanoscience, Istituto Italiano di Tecnologia, Rome, Italy. 4Dipartimento di Biologia e Biotecnologie "Charles Darwin", Sapienza University of Rome, Rome, Italy. 5Santa Lucia Foundation (IRCCS Fondazione Santa Lucia), Rome, Italy. 6European Brain Research Institute-Rita Levi Montalcini, Rome, Italy. 7CrestOptics S.p.A., Via di Torre Rossa 66, 00165 Rome, Italy. 8Centre de Recherche du CHU de Québec, Axe Neurosciences Québec, QC, Canada; Département de médecine moléculaire, Université Laval Québec, QC, Canada. 9National Research Council, Institute of Biochemistry and Cell Biology (CNR- IBBC/EMMA/Infrafrontier/IMPC), International Campus “A. Buzzati-Traverso”, Monterotondo (Rome) Italy. -
Neurons and Glia
CHAPTER TWO Neurons and Glia INTRODUCTION THE NEURON DOCTRINE The Golgi Stain Cajal’s Contribution BOX 2.1 OF SPECIAL INTEREST: Advances in Microscopy THE PROTOTYPICAL NEURON The Soma The Nucleus Neuronal Genes, Genetic Variation, and Genetic Engineering BOX 2.2 BRAIN FOOD: Expressing One’s Mind in the Post-Genomic Era BOX 2.3 PATH OF DISCOVERY: Gene Targeting in Mice, by Mario Capecchi Rough Endoplasmic Reticulum Smooth Endoplasmic Reticulum and the Golgi Apparatus The Mitochondrion The Neuronal Membrane The Cytoskeleton Microtubules BOX 2.4 OF SPECIAL INTEREST: Alzheimer’s Disease and the Neuronal Cytoskeleton Microfilaments Neurofilaments The Axon The Axon Terminal The Synapse Axoplasmic Transport BOX 2.5 OF SPECIAL INTEREST: Hitching a Ride with Retrograde Transport Dendrites BOX 2.6 OF SPECIAL INTEREST: Intellectual Disability and Dendritic Spines CLASSIFYING NEURONS Classification Based on Neuronal Structure Number of Neurites Dendrites Connections Axon Length Classification Based on Gene Expression BOX 2.7 BRAIN FOOD: Understanding Neuronal Structure and Function with Incredible Cre GLIA Astrocytes Myelinating Glia Other Non-Neuronal Cells CONCLUDING REMARKS 23 © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION. 24 PART ONE FOUNDATIONS INTRODUCTION All tissues and organs in the body consist of cells. The specialized func- tions of cells and how they interact determine the functions of organs. The brain is an organ—to be sure, the most sophisticated and complex organ that nature has devised. But the basic strategy for unraveling its functions is no different from that used to investigate the pancreas or the lung. We must begin by learning how brain cells work individually and then see how they are assembled to work together. -
Oxytocin Effects in Mothers and Infants During Breastfeeding
© 2013 SNL All rights reserved REVIEW Oxytocin effects in mothers and infants during breastfeeding Oxytocin integrates the function of several body systems and exerts many effects in mothers and infants during breastfeeding. This article explains the pathways of oxytocin release and reviews how oxytocin can affect behaviour due to its parallel release into the blood circulation and the brain. Oxytocin levels are higher in the infant than in the mother and these levels are affected by mode of birth. The importance of skin-to-skin contact and its association with breastfeeding and mother-infant bonding is discussed. Kerstin Uvnäs Moberg Oxytocin – a system activator increased function of inhibitory alpha-2 3 MD, PhD xytocin, a small peptide of just nine adrenoceptors . Professor of Physiology amino acids, is normally associated The regulation of the release of oxytocin Swedish University of Agriculture O with labour and the milk ejection reflex. is complex and can be affected by different [email protected] However, oxytocin is not only a hormone types of sensory inputs, by hormones such Danielle K. Prime but also a neurotransmitter and a as oestrogen and even by the oxytocin 1,2 molecule itself. This article will focus on PhD paracrine substance in the brain . During Breastfeeding Research Associate breastfeeding it is released into the brain of four major sensory input nervous Medela AG, Baar, Switzerland both mother and infant where it induces a pathways (FIGURES 2 and 3) activated by: great variety of functional responses. 1. Sucking of the mother’s nipple, in which Through three different release pathways the sensory nerves originate in the (FIGURE 1), oxytocin functions rather like a breast.