Palacký University Olomouc Name of the U

A-I – Basic Information About the Accreditation Application

Name of the University: Palacký University Olomouc

Name of the University Facility: Faculty of Science

Name of the Collaborating Institution: —

Name of the Study Program: Plant Biology

Accreditation Application Type: Study program approval

Approving Authority: Academic Senate: 4. 3. 2020 Scholarly Board Internal Assessment Board

Date of Application Approval:

Link to the Application in Electronic Form: UPShare: portal.upol.cz

Links to the Relevant Internal Regulations: UPShare: portal.upol.cz

ISCED F and Brief Reasoning: 0511

Version as of 1 February, 2019 B-I – Study Program Characteristics Name of Study Program Plant Biology Type of Study Program Follow-Up Master Profile of Study Program Academically-oriented Study Form Ffull-time Standard Study Period 2 years Study Language English Academic Degree Granted Mgr. Rigorous Procedure No Academic Degree Granted — Study Program Guarantor doc. RNDr. Barbora Mieslerová, Ph.D. Focused on Preparation for No Pursuit of a Regulated Profession Focus on Preparation of No Professionals in Security Services of the Czech Republic Recognition Authority

Field(s) of Education; for a Part-Time Study Program the Proportion of the Individual Fields in %

Biology

Study Objectives of the Study Program

The program Plant Biology aims to prepare university educated specialists with deep theoretical and practical knowledge gained by studying biological disciplines specializing on plant biology, which enable them to quickly and creatively orientate in new issues according to the requirements of practice. The extension of basic knowledge of biology obtained in the framework of the bachelor study is achieved by completing specialized lectures focused on the fields of plant physiology, systematic biology, ecology and agroecology, biotechnology, plant geography, plant breeding and phytopathology. Students will not be only able to work systematically with professional foreign language literature thanks to lectures and tutorials in English language however also evaluate, statistically process, interpret, discuss and present the results. The theoretical and practical knowledge enable to plant biology graduates to go into practice in areas dealing with plants, mainly in agriculture or environmental protection, and in the applied sciences associated with it, or to be able to carry out scientific and research activities through the ability to present the results obtained at a professional level. It is possible to follow up in the doctoral program - Botany.

Study Program Graduate Profile

Graduates of the study program will obtain knowledge and skills in the field of plant physiology, ecology, taxonomy, plant geography, plant breeding, plant pathology and biotechnology at the level of contemporary science. Graduates would be able to participate in research scientific projects, independently solve professional tasks in the field and in the laboratory.

The graduates can work in the research institutes (in basic and applied biological research), at universities, botanical gardens, museums, nature conservation agencies, protected areas and national parks administration, in the system of state administration, wastewater treatment plants, companies focused on ecological issues and assessment of the state of the environment, ecological consulting services, etc.

Version as of 1 February, 2019 Rules and Conditions for Elaboration of Study Plans

Rules and conditions for creating study plans are in accordance with internal standard R-B-17/07 Standards for Institutional Accreditation and Standards for Study Programs at Palacký University Olomouc.

Credit system: ECTS.

Conditions for Admission to Study

Applicants are admitted on the basis of an interview, which can be completed within the web services (Skype, WhatsApp, Viber). The condition is a completed bachelor study program in the field of biology, resp. applied biological sciences (agriculture, ecology and environment).

Links to Other Types of Study Programs

Students can continue at the doctoral study program 1507V004 Botany.

Version as of 1 February, 2019 B-IIa – Study Plans and Proposal for Theses Topics (Bachelor and Master Degree Programs) Study Plan Code Plant Biology Compulsory Courses Course Name Extent Form of No. of Lecturer Recomm. Profile (l+p+s) course Credits Year/Term Basis completion LRR/SFRZE prof. RNDr. Martin Fellner, 26+0+0 Ex 3 1/W ZT Plant Physiology Ph.D. (100 %) Mgr. Dana Šafářová, Ph.D. KBB/CONGE 26+0+0 Ex 3 (50 %), doc. Ing. Petr Smýkal, 1/W PZ Conservation Genetics Ph.D. (50 %) prof. Ing. Aleš Lebeda, DrSc. (25 %), Mgr. Pavel Matušinský, Ph.D. (20 %), doc. BOT/ZFPE RNDr. Barbora Mieslerová, 26+0+0 Ex 3 1/W ZT Phytopathology Ph.D., (15 %), RNDr. Božena Sedláková, Ph.D. (20 %), doc. RNDr. Michaela Sedlářová, Ph.D. (20 %) prof. Ing. Aleš Lebeda, DrSc. BOT/GME 26+0+0 Ex 3 (50 %), doc. RNDr. Barbora 1/W ZT General Mycology Mieslerová, Ph.D. (50 %) EKO/MVPOE prof. MVDr. Emil Tkadlec, Methods of Scientific 0+0+26 Co 3 1/W PZ CSc. (100 %) Research prof. Dr. Ing. Bořivoj EKO/PEEPE Šarapatka, CSc. (70 %), doc. Soil Science and Soil 26+13+0 Ex 4 1/W PZ RNDr. Mgr. Ivan Hadrián Tuf, Ecology Ph.D. (30 %) BOT/DPBE1 doc. RNDr. Barbora 0+65+0 Pre-Ex 7 1/S ZT Master's Diploma Thesis 1 Mieslerová, Ph.D. (100 %) BOT/LPXE1 doc. RNDr. Barbora 0+1TS+0 Pre-Ex 6 1/S PZ Laboratory Practice 1 Mieslerová, Ph.D. (100 %) BOT/BRGME doc. RNDr. Vladan Ondřej, 26+26+0 Ex 5 1/S ZT Biotechnology of Plants Ph.D. (100 %) BOT/MMSRE RNDr. Miloslav Kitner, Ph.D. Practicals Training in 13+13+0 Ex 3 (50 %), RNDr. Ľuboš Majeský, 1/S PZ Molecular Markers Ph.D. (50 %) doc. RNDr. Barbora BOT/BIKRE Mieslerová, Ph.D. (25%), Principles of Classification of 26+26+0 Ex 5 RNDr. Radim J. Vašut, Ph.D. 1/S ZT Plants (50 %), doc. RNDr. Petr Hašler, Ph.D. (25 %) doc. RNDr. Bohumil Trávníček, Ph.D. (25 %), BOT/EKRE 26+0+0 Ex 3 RNDr. Martin Duchoslav, 1/S ZT Plant Ecology Ph.D. (40 %), RNDr. Miroslav Zeidler, Ph.D. (35 %) doc. Ing. Petr Smýkal, Ph.D. BOT/SROE 26+13+0 Ex 4 (50 %), doc. Ing. Eva 2/W ZT Plant Breeding – General Part Křístková, Ph.D. (50 %) doc. RNDr. Vladan Ondřej, BOT/FTGSE 26+0+0 Ex 3 Ph.D. (25 %), RNDr. Luboš 2/W ZT Plant Geography Majeský Ph.D. (75 %)

Version as of 1 February, 2019 BOT/DPBE2 doc. RNDr. Barbora 0+91+0 Pre-Ex 10 2/W ZT Master's Diploma Thesis 2 Mieslerová, Ph.D. (100 %) BOT/LPXE2 doc. RNDr. Barbora 0+1TS+0 Pre-Ex 6 2/W PZ Laboratory Practice 2 Mieslerová, Ph.D. (100 %) BOT/BSTSE RNDr. Martin Duchoslav, 26+26+0 Ex 5 2/W PZ Biostatistics Ph.D. (100 %) doc. Ing. Petr Smýkal, Ph.D. BOT/SRSE 26+13+0 Ex 4 (50 %), doc. Ing. Eva 2/S ZT Plant Breeding – Special Part Křístková, Ph.D. (50 %) BOT/DPBE3 doc. RNDr. Barbora 0+65+0 Pre-Ex 7 2/S ZT Master's Diploma Thesis 3 Mieslerová, Ph.D. (100 %)

Conditions for fulfilment of this group of courses: 87 credits

Compulsory-Elective Courses – Group 1 doc. Mgr. Karel Weidinger, ZOO/ADE 13+13+0 Ex 3 Dr. (70 %), Doc. Mgr. 1/W PZ Data Analysis Vladimír Remeš, Ph. D. (30 %) EKO/AZHOE prof. Dr. Ing. Bořivoj Agroecology and Basics of 26+0+0 Ex 3 Šarapatka, CSc. (70 %), Ing. 1/W PZ Agricultural Management Radoslav Koprna, Ph.D. (30 %) LRR/MVE Ing. Radoslav Koprna, Ph.D. 13+0+0 Ex 2 1/S PZ Plant Mineral Nutrition (100 %) BOT/RBPEN Lessons from doc. RNDr. Vladan Ondřej, 26+0+0 Ex 3 2/W PZ Plant Reproduction Biology Ph.D. (100 %)

Conditions for fulfilment of this group of courses: min 7 credits

Compulsory-Elective Courses – Group 2 BOT/KVAPE Systematic Anatomy and PaedDr. Ing. Vladimír 13+13+0 Co 3 1/S Morphology of Vascular Vinter, Dr. (100 %) Plants BOT/DENE RNDr. Radim Jan Vašut, 13+26+0 Ex 4 1/W Dendrology Ph.D. (100 %) BOT/RBROE Doc. RNDr. Vladan Ondřej, 26+0+0 Ex 3 2/W Radiobiology Ph.D. (100 %) EKO/ZZEE Mgr. Monika Mazalová, 26+0+0 Ex 3 1/W Basic Ecology Ph.D. (100 %) BOT/FPRX1 doc. RNDr. Vladan Ondřej, 0+1TS+0 Pre-Ex 6 1/S Field Practice 1 Ph.D. (100 %) BOT/FPRX2 doc. RNDr. Vladan Ondřej, 0+1TS+0 Pre-Ex 6 2/W Field Practice 2 Ph.D. (100 %)

Conditions for fulfilment of this group of courses: min 13 credits

Compulsory-Elective Courses – Group 3 RNDr. Michal Hroneš, Ph.D. BOT/VPAU 13+0+0 Co 1 (50 %), RNDr. Martin 1/S Flying Seminars in Botany 1 Duchoslav, Ph.D. (50 %) RNDr. Michal Hroneš, Ph.D. BOT/VPBSB 13+0+0 Pre-Ex 1 (50 %), RNDr. Martin 1/W Flying Seminars in Botany 2 Duchoslav, Ph.D. (50 %) BOT/FYTEX doc. RNDr. Barbora 0+3D/S+0 Pre-Ex 4 S Phytopathological excursion Mieslerová Ph.D. (50 %), doc.

Version as of 1 February, 2019 RNDr. Michaela Sedlářová PhD. (50 %) doc. RNDr. Bohumil Trávníček, Ph D. (25 %), RNDr. Michal Hroneš Ph.D. BOT/MOBEX (20 %), RNDr. Alois Biodiversity hotspots of 0+5D/S+0 Pre-Ex 2 S Čelechovský PhD. (20 %), Central Moravia RNDr. Martin Duchoslav, Ph.D. (25 %), RNDr. Robin Kundrata, Ph.D. (10 %). BOT/DENEX RNDr. Radim Vašut Ph.D. 0+3D/S+0 Co 3 S Dendrological excursion (100 %) VCJ/ATB1 Lecturers of the Department of English Terminology for 0+26+0 Ex 3 W/S Foreign Languages FS UP Biology 1

Conditions for fulfilment of this group of courses: min 11

Components of State Examination and Their Content

The final state exam summarizes the knowledge of individual disciplines acquired during the two years of study. It consists of the defence of the thesis and four subjects:

Plant Taxonomy and Geography BOT/SZZTE 1. Variability and evolution of plants 2. Taxonomy and systematics of higher plants 3. Characteristics of plant biomes and floristic areas 4. Evolution of plants in context with transformations of Earth (continents, climate) 5. Evolution of flora in the area of middle Europe with emphasis on quarter

Ecology and Agroecology BOT/SZZEE

1. Main environmental factors 2. Inter-relationships between populations and individuals, strategies of plant populations 3. Communities, ecosystems and their stability 4. Biogeochemical cycles of the most important elements and water 5. Basics of pedology and mineral nutrition of plants

Biotechnology and Plant Physiology BOT/SZZPE

1. Basic biotechnological methods 2. Genetic modifications of organisms – methods, importance 3. Ontogenetical development of plants, importance of phytohormones 4. Reproduction biology of plants 5. Responses of plants on external stimuli and stress

Plant Breeding and Phytopathology BOT/SZZBE

1. Development centres of cultural plants, the process of domestication 2. Basic of breeding process 3. Conservation genetics 4. Molecular markers of plants – methods and importance 5. Basic of phytopathology – characteristics of plant pathogens and process of pathogenesis

Thesis defence BOT/OBHDP

Version as of 1 February, 2019 Other Study Requirements —

Proposal for Topics of Qualification Theses, and Topics of Defended Theses

Full texts of diploma theses are available in the Theses (http://www.theses.cz) database or in the UP - Stag internal database.

Burešová V. (2012): Srovnávací morfologie cytotypů česneku planého (Allium oleraceum) Horák D. (2017): Cytogeografie a morfologie okruhu křivatce českého (Gagea bohemika agg.) ve střední Evropě Chlápková K. (2015): Druhová bohatost mechorostů lužního lesa Žebračka u Přerova Liška, M. (2019): Sezónní dynamika bylinného podrostu temperátního lesa na topografickém gradientu Kollár, J. (2016): Fylogenetická delimitace druhů skupiny Pinnularia subgibba a její soulad s morfologií

Proposal for Topics of Rigorous Theses, and Topics of Defended Theses —

Components of State Rigorous Examination and Their Content —

Abbreviations: Ex: Exam Pre-Ex: Pre-Exam Credit Co: Colloquium W/S: Winter/Summer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course LRR/SFRZE Plant Physiology Type of Course Compulsory/ ZT Recommended Year/Term 1/W Extent of Course 26p+0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lecture Method Study Results Examination Combined Form and Other Requirements

Course Guarantor prof. RNDr. Martin Fellner, Ph.D. Involvement of the Guarantor 100% in Lecturing Lecturer prof. RNDr. Martin Fellner, Ph.D. (100 %)

Brief Course Annotation Selected subjects from plant physiology: 1) Model plant Arabidopsis thaliana, 2) Gene expression and signal transduction; 3) Role of light and phytochromes in plant growth and development; 4) Plant responses to blue light and signaling pathways; 5) Physiology of plant hormones auxins - receptors and signaling pathways; 6) Cross-talk between auxin and light signaling; 7) Plant hormones brassinosteroids and their role in plant growth and development.

Literature and Equipment needed Recommended: Taiz L, Zeiger E. Plant Physiology, 5th. ed., Sinauer Associates, Inc. Publishers. Sunderland, Massachusetts, USA, 2010. Recommended: Jones R et al. The molecular life of plants; Wiley-Blackwell, American Society of Plant Biologists. USA, 2013. ISBN 978-0-470-87011-2.

Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course KBB/CONGE Conservation Genetics Type of Course Compulsory/ PZ Recommended Year/Term 1/W Extent of Course 26p+0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lecture Method Study Results Examination Combined Form and Other Requirements

Course Guarantor Mgr. Dana Šafářová, Ph.D. Involvement of the Guarantor 50 % in Lecturing Lecturer Mgr. Dana Šafářová, Ph.D. (50 %), doc. Ing. Petr Smýkal, Ph. D. (50 %)

Brief Course Annotation

1. Introduction into Conservation Genetics. 2. Genetic diversity. 3. Genetics of wild populations. 4. Genetics of small populations. 5. Inbreeding. 6. Genetically viable populations and the species extinction. 7. Taxonomy. 8. Genetic aspects of introduced and invasive species. 9. Genetic management of captive populations, reintroduction of species. 10. Conservation genetics of microorganisms. 11. Methods of molecular biology used in conservation genetics. 12. Forensic genetics

Literature and Equipment needed Basic: Šafářová D., Smýkal P., Šafář J. Konzervační genetika. Olomouc, 2015. Further literature: Compeau, P., & Pevzner, P. Bioinformatics algorithms: an active learning approach. La Jolla, Calif: Active Learning Publishers, 2014. ISBN 978-0-9903746-0-2. Further literature: Lesk, A. M. Introduction to genomics. Oxford: Oxford University Press, 2012. ISBN 978- 0-19-956435- Recommended: Frankham, R., Ballou, J. D., Briscoe, D. A., & McInness, K. H. A primer of conservation genetics. Cambridge: Cambridge University Press, 2004. ISBN 0521538270. Recommended: Brooker. Genetics: Anaysis and Principles. 2014. Recommended: Frankhalm, R., Ballou, J. D., Briscoe, D. A., & McInness, K. H. Introduction to conservation genetics. New York, N.Y: Cambridge University Press, 2010. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/ZFPE Phytopathology Type of Course Compulsory/ZT Recommended Year/Term 1/W Extent of Course 26p+0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lecture Method Study Results Examination Combined Form and Other Requirements

Course Guarantor prof. Ing. Aleš Lebeda, DrSc. Involvement of the Guarantor 25% in Lecturing Lecturer prof. Ing. Aleš Lebeda, DrSc. (25 %), Mgr. Pavel Matušinský, Ph.D. (20 %), doc. RNDr. Barbora Mieslerová, Ph.D. (15 %), RNDr. Božena Sedláková, Ph.D. (20 %), doc. RNDr. Michaela Sedlářová, Ph.D. (20 %) Brief Course Annotation The course inform the students with definition of phytopathology, selected phytopathological terms, history and importance of phytopathology and classification of plant diseases. Than the attention is paid on biotic causers of diseases (viruses, viroids, bacteria, fungi, protozoan, nematodes and parasitic plants); course of infection proces; defense strategies of plants to pathogens; genetics in the interaction host and pathogen and plant protection. The second part of lectures is focused on the most important diseases of field crops, vegetables, fruits, grapevine, technical crops and ornamental trees and herbs.

1. Introduction. 2. Causers of infective diseases of plants. 3. Specificity of interactions host-pathogen. 4. Course of infection proces. 5. Defense strategies of plants to pathogens. 6. Genetics in the interaction host and pathogen. 7. Plant protection. 8. Diseases of field crops. 9. Diseases of vegetables. 10. Diseases of fruits. 11. Diseases of technical and ornamental plants. 12. Diseases of trees. Literature and Equipment needed Recommended: Holliday P. (1998). A Dictionary of Plant Pathology. 2nd Ed.. Cambridge University Press. Recommended: Šutić D.D., Sinclair J.B. (1991). Anatomy and physiology of diseased plants.. CRC Press, Florida. Recommended: Kůdela V. a kol. (1989). Obecná fytopatologie.. Academia, Praha. Recommended: Lucas, J.A. (1998). Plant Pathology and Plant Pathogens. 3nd Ed.. Blackwell Science. Recommended: Agrios G.N. (2005). Plant Pathology. 5th Edition.. Elsevier AP, Oxford. Recommended: Kůdela V. a kol. (2002). Rostlinolékařská bakteriologie.. Academia, Praha. Recommended: Jones, G. (1998). The epidemiology of plant diseases.. Kluwer Academic Publishers. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/GME General Mycology Type of Course Compulsory/ZT Recommended Year/Term 1/W Extent of Course 26p +0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lecture Method Study Results Examination Combined Form and Other Requirements

Course Guarantor prof. Ing. Aleš Lebeda, DrSc. Involvement of the Guarantor 50 % in Lecturing Lecturer prof. Ing. Aleš Lebeda, DrSc. (50 %), doc. RNDr. Barbora Mieslerová, Ph. D. (50 %)

Brief Course Annotation

1. Characteristics of fungi. Systematics od fungi. Fossil records of fungi. 2. Growth and development of fungi. Environemntal factors influencing growth and development of fungi. 3. Morphology of thallus, hyphae and their modification, anatomy and morphology of sporocarps. 4. Spores - characteristics, releasing and distribution. 5. Reproduction of fungi, life cycles. 6. Genetics and genetic variation of fungi - mutation, heterokaryosis, parasexuality, genetics of virulence and pathogenity, homothalism and heterothalism. 7. Physiology of fungi - modes of fungal nutrition. Metabolism - fungal enzymes, glykolysis, respiration, fermentation, bioluminiscence, primary and secondary metabolites. 8. Ecological classification of fungi. Ecological succession, life strategies, stress, competition. Saprotrophic fungi. 9. Symbiotic fungi (mycorrhiza, lichenism, zoosymbiosis). 10. Zoo- and phytopathogenic fungi - classification, distribution and importance. 11. Mycotoxicology, toxins of micro - and macromycetes. 12. Exploitation of fungi in industry, agriculture, biotechnology and medicine.

Literature and Equipment needed Recommended: Hawksworth, D.L., Kirk, P.M., Sutton, B.C., Pegler, D.N. Ainsworth & Bisby´s dictionary of the fungi. 8th edition.. CAB International, University Press, Cambridge, UK., 1995. Recommended: Moore, D., Novak Frazer, L.A. Essentials fungal genetics. Springer-Verlag, New York, USA, 2002. Recommended: Hudson H. J. Fungal Biology. Edward Arnold Publishers Ltd., London, 1986. Recommended: Dix, N.J., Webster, J. Fungal Ecology. Chapman & Hall, London, 1995. Recommended: Griffin D.H. Fungal Physiology. Willey-Liss, New York, 1994. Recommended: Kavanagh, K. (Ed.). Fungi. Biology and Applications. Wiley, Chichester. Chichester, 2005. Recommended: Alexopoulos, C.J., Mims, C.W., Blackwell, M. Introductory Mycology. John Wiley & Sons, New York, 1996. Recommended: Deacon, J.W. Modern Mycology. 3rd edition. Blackwell Science Ltd.. Oxford, 1997. Recommended: Kendrick, B. The Fifth Kingdom, 2nd edition. Mycologue Publications, Waterloo, Ontario, Canada, 1997. Recommended: Carlile, M.J., Watkinson S.C., Gooday, G.W. The fungi. Second Edition. Academic Press, San Diego, 2001. Recommended: Esser, K., Lemke, P.A. (Eds.). The Mycota, Vols. I-XII. 1994-. Springer, Berlin, 2006.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course EKO/MVPOE Methods of Scientific Research Type of Course Compulsory/PZ Recommended Year/Term 1/W Extent of Course 0+0+26s Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Co Form of Lecturing Lecture Method Study Results Examination Oral Colloquium Form and Other Requirements

Course Guarantor prof. MVDr. Emil Tkadlec, CSc. Involvement of the Guarantor 100 % in Lecturing Lecturer prof. MVDr. Emil Tkadlec, CSc. (100 %)

Brief Course Annotation History and development of philosophy of science in the 20th century (neopositivists, Popper, Kuhn, Lakatos, Laudan, Feyerabend). Collecting scientific information and its resources at Faculty of Science PU, style and structure of scientific writing, citation styles, oral presentation and scientific project. Furthermore, they will learn the basic skills in scientific writing, presentation of scientific results and working out projects for scientific research.

Literature and Equipment needed Recommended: Meško, D., Katuščák, D., Findra, J. a kol. Akademická příručka. Osveta Martin, 2006. ISBN 80-8063-219-7. Recommended: Fajkus B. Filosofie a metodologie vědy: vývoj, současnost a perspektivy. Praha: Academia, 2005. Recommended: Day RA. How to write & publish a scientific paper. 5th ed. Cambridge University Press, 1998. Recommended: Šesták, Z. Jak psát a přednášet o vědě. 2000. Recommended: Council of Science Editors, Style Manual Committee. Scientific style and format: the CSE manual for authors, editors, and publisher.. 7th ed. Reston (VA): The Council, 2006. Recommended: Fajkus. Současná filosofie a metodologie vědy. 1997. Recommended: Tkadlec E. Strategie a metody vědecké práce v přírodních vědách: filozofické názory a komunikační dovednosti. UP Olomouc, 2011. Recommended: Godfrey-Smith P. Theory and reality: an introduction to the philosophy of science. Chicago: Univ Chicago Press, 2003. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course EKO/PEEPE Soil Science and Soil Ecology Type of Course Compulsory/PZ Recommended Year/Term 1/W Extent of Course 26p+13cv+0 Hours 39 Credits 4 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Combined Form and Other Requirements

Course Guarantor prof. Dr. Ing. Bořivoj Šarapatka, CSc. Involvement of the Guarantor 70 % in Lecturing Lecturer prof. Dr. Ing. Bořivoj Šarapatka, CSc. (70 %), Doc. RNDr. Ivan Hadrián Tuf, Ph.D. (30 %)

Brief Course Annotation

Lectures present basic information about mineral and organic part of soil, their formation and classification. Attention is devoted to physical and chemical soil properties, soil coloids and ion sorption. Important part of the subject is soil biota and its role in decomposition processes and ecological functions of individual groups in terrestrial ecosystems. Relevant parts of lectures include soil formation processes and soil classifications (WRB, Czech soil taxonomical system). Knowledge about soil science and ecology are completed by information from soil geography, soil quality and degradation processes.

Literature and Equipment needed Recommended: Coleman, D. C., Crosley, D. A. Jr. Fundamentals of Soil Ecology, 2nd edition. Academic Press, 2004. Recommended: Šarapatka, B. Pedologie a ochrana půdy. Vydavatelství Univerzity Palackého, 2014. Recommended: Brady, N.C., Weil, R.R. The nature and properties of soils. Upper Saddle River, 2002.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/DPBE1 Master's Diploma Thesis 1 Type of Course Compulsory/ZT Recommended Year/Term 1/S Extent of Course 0+65cv +0 Hours 65 Credits 7 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Practicals Method Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Barbora Mieslerová, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Barbora Mieslerová, Ph.D. (100 %)

Brief Course Annotation The subject of study, topic of the Thesis. Literature overview. Research outline - general and particular aims. Getting familiar with basic methodology.

Literature and Equipment needed Recommended: Taiz, L. (ed.) (2018). Fundamentals of Plant Physiology. Oxford University Press. Recommended: Deacon, M.W. (1997). Modern Mycology. Oxford. Recommended: Lee, R.E. (ed.) (2018). Phycology. Cambridge University Press. Recommended: Schulze, E.-D. (ed.) (2019). Plant Ecology. Springer. Recommended: Agrios, G.N. (2005). Plant Pathology. Academic Press. Recommended: Singh, G. (ed.) (2018). Plant Systematics. New York. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/LPXE1 Laboratory Practice 1 Type of Course Compulsory/PZ Recommended Year/Term 1/S Extent of Course 0+1T/S+0 Hours 40 Credits 6 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Practicals Method Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Barbora Mieslerová, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Barbora Mieslerová, Ph.D. (100 %)

Brief Course Annotation

Students will be introduced to daily lab work, presenting practical applications in particular fields. It takes place in specialized instutions/laboratories (basic and applied research) focusing on Plant Sciences

Literature and Equipment needed Recommended: Pendarvis, M.P., Crawley, J.R. (2018). Exploring Biology in the Laboratory. Morton Publishing Company. Recommended: Davis, D.L. (2016). Laboratory Safety. ASCP.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/BRGME Biotechnology of Plants Type of Course Compulsory/ZT Recommended Year/Term 1/S Extent of Course 26p+26cv +0 Hours 52 Credits 5 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Vladan Ondřej, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Vladan Ondřej, Ph.D. (100 %)

Brief Course Annotation Lectures: History of biotechnologies, division, green biotechnology. Potential of plant cell and principle of plant tissue culture (technigues preserving and technigues increasing genetic variability of plants) and application in practice. Using of plant biotechnologies in agriculture, pharmaceutical industry, keeping the gene pool and phytoremediation. GMO of field crops. Application biotechnological methods in pea,bean and flax breeding. Practices: Preparation of media, establishment of aseptic culture. Micropropagation, androgenesis, embryogenesis. Agrobacterium genetic transformation of peas and beans, and the effect of co-cultivation period on transformation efficiency.

Literature and Equipment needed

Recommended: Kreuzer H., Massay A. Biology and biotechnology.. Washington, D.C., 2005. ISBN 1-55581- 304-6. Recommended: Ram, A. Biotechnology: theory and practice. Jaipur: Oxford Book Co, 2010. ISBN 9789380179360. Recommended: Smith J.E. (ed.). Biotechnology, 3rd Edition, Cambridge University Press 1998, ISBN 0-521- 44911-1. Recommended: Heldman D.R., Wheler M.B., Hoover D.G. Encyclopedia of Biotechnology in agriculture and food.. ISBN 9780849350276. Recommended: Procházka S. a kol. Fyziologie rostlin.. Academia, 1998. ISBN 80-200-0586-2. Recommended: Trigiano R.N., Gray D.J. Plant development and biotechnology.. CRC Press, 2005.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/MMSRE Practicals Training in Molecular Markers Type of Course Compulsory/PZ Recommended Year/Term 1/S Extent of Course 13p+13cv +0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Combined Form and Other Requirements

Course Guarantor RNDr. Miloslav Kitner, Ph.D. Involvement of the Guarantor 50 % in Lecturing Lecturer RNDr. Miloslav Kitner, Ph.D. (50 %), RNDr. Ľuboš Majeský, Ph.D. (50 %)

Brief Course Annotation

The aim of this course is to acquire basic skills of selected methods of molecular biology, which are currently being used in plant breeding, espetially for plant genotyping: isozyme analysis, RFLP RFLP (restriction fragment lenght polymorphism), AFLP (amplified fragment lenght polymorphism), SSR (simple sequence repeats, microsatellites). The use of these methods for cultivar identification, seed homogeneity testing, hybrid detection, genotyping, MAS (marker-assisted selection). Students will acquire basic methods of DNA isolation, amplification, separation and detection of PCR products, work with databases and statistic software.

Literature and Equipment needed Recommended: Weising K., Nybom H., Wolff K., Kahl G. 2005. DNA fingerprinting in plants. Principles, methods and applications (2nd ed). CRC Press, Boca Raton, FL, USA, 444pp. Recommended: Chaloupek O. 2000. Genetická diverzita, šlechtění a semenářství. Academia, Praha, 311 pp.. Recommended: Mazura I., Michalová K., Brdička R., Mácha J. 2001. Speciální metody molekulární biologie. Univerzita Karlova v Praze, Karolinum, 101pp.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/BIKRE Principles of Classification of Plants Type of Course Compulsory/ZT Recommended Year/Term 1/S Extent of Course 26p+26cv+0 Hours 52 Credits 5 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Barbora Mieslerová, Ph.D. Involvement of the Guarantor 25 % in Lecturing Lecturer doc. RNDr. Barbora Mieslerová, Ph.D. (25%), Doc. RNDr. Petr Hašler, Ph.D. (25%), RNDr. Radim J. Vašut, Ph.D. (50 %) Brief Course Annotation 1. Methods and principles in Plant Systematics. Linnean systematics, modern APG systematics. 2. Comparison of anatomy, morphology, reproduction, life strategies among the most important representatives of the main groups, including kingdom Protozoa (Acrasiomycota, Myxomycota, Plasmodiophoromycota); kingdom Chromista (Labyrinthulomycota, Oomycota, Hyphochytriomycota); c) kingdom Fungi (Chytridiomycota; Microsporidiomycota; Zygomycota, Ascomycota, Deuteromycota, Basidiomycota). Explaining the major evolutionary trends in Fungi s.l. phylogeny. 3. Comparison of anatomy, morphology, reproduction and the most important representatives of the main groups: Archebacteria and Cyanobacteria, Protozoa (Euglenophyta and Dinophyta), Chromista (Heterokontophyta and Haptophyta), Biliphytae (Glaucophyta and Rhodophyta), Chlorophytae (Chlorophyta and Charophyta). Evolution and diversity of green and land plants. Evolution, diversity and relationships of bryophytes and vascular plants. 4. The evolutionary origin, phylogenetic relationships of major plant groups. Major evolutionary novelties, morphology and anatomy comparison of major groups and biological characteristics (life-cycles, distribution, social impact) including Bryophytes s.l. (Anthocerotophyta, Marchantiophyta and Bryophyta), vascular plants - Rhyniophyta, Lycopodiophyta, ferns, horsetails, cycases, Ginkgophyta, conifers and flowering plants (Magnoliophyta). 7. Main evolutionary trends in flowering plants (according to APV IV). Important representatives of the Czech Flora.

Practical exercises include demonstration of living or conserved material, excursion to the Botanical garden of Palacký University and the seminary with students' presentations.

Literature and Equipment needed Recommended: Hoek, C. van den, Mann, D.G., Jahns, H.M. Algae. An introduction to phycology. Cambridge Univ. Press, UK, 1995. Recommended: THE ANGIOSPERM PHYLOGENY GROUP. (2009). An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. - Botanical Journal of the Linnean Society 161: 105-121. Recommended: Stevens P. F. et al. (2014). ANGIOSPERM PHYLOGENY WEBSITE. St. Louis, MO. Recommended: Deacon, J.W. Modern Mycology. 3rd edition. Blackwell Science Ltd.. Oxford, 1997. Recommended: Simpson, M. G. Plant systematics. Elsevier Academic Press, Amsterdam, 2006. Recommended: Christenhusz, M. J. M., Fay, M. F, Chase, M. W. Plants of the World: An Illustrated Encyclopedia of Vascular Plants. RBG Kew, London, 2017. Recommended: Talbot P.H.B. Principles of fungal taxonomy. MacMillan, London, UK, 1971. Recommended: Kendrick, B. The Fifth Kingdom, 2nd edition. Mycologue Publications. Waterloo, Ontario, Canada, 2000. Recommended: Byng, J. W. The Flowering Plants Handbook. Plant Gateway, Ltd, 2014. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/EKRE Plant Ecology Type of Course Compulsory/ZT Recommended Year/Term 1/S Extent of Course 26p+0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Study Results Examination written Form and Other Requirements

Course Guarantor doc. RNDr. Bohumil Trávníček, Ph.D. Involvement of the Guarantor 25 % in Lecturing Lecturer doc. RNDr. Bohumil Trávníček, Ph.D. (25 %), RNDr. Martin Duchoslav, Ph.D. (40 %), RNDr. Miroslav Zeidler, Ph.D. (35 %) Brief Course Annotation Basic terms and introduction into plant ecology; photosynthesis in relation to environmental factors; influence of basic environmental factors (water, temperature, pH, nutrients, etc.) on plants; adaptation plants for environment; growth and ontogenesis; plant population; plant communities; ecology of (sexual and asexual) reproduction; plants in trophic webs and climate change

Literature and Equipment needed Recommended: Begon M., J. L. Harper, C. R. Townsend . Ekologie jedinci, populace a společenstva. Vydavatelství Univerzity Palackého, Olomouc.. Academia, Praha., 1997. Recommended: Slavíková J. Ekologie rostlin. SPN, Praha, 1986. Recommended: Larcher W. Physiological plant ecology. Ecophysiology and stress physiology of functional groups. Springer.. 2003. Recommended: Crawley M. J. Plant ecology.. Blackwell Science Ltd, London., 1997. Recommended: Schulze E.D., Beck E., Müller-Hohenstein (2005). Plant ecology. Springer. Recommended: Odum, E. Základy ekologie. Academia, Praha., 1977. Recommended: Larcher W. (1988) Fyziologická ekologie rostlin. Academia, Praha.. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/SROE Plant Breeding – General Part Type of Course Compulsory/ZT Recommended Year/Term 2/W Extent of Course 26p+13cv+0 Hours 39 Credits 4 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. Ing. Petr Smýkal, Ph.D. Involvement of the Guarantor 50 % in Lecturing Lecturer doc. Ing. Petr Smýkal, Ph.D. (50 %), doc. Ing. Eva Křístková, Ph.D. (50 %)

Brief Course Annotation 1. Genetic diversity (significance, protection); 2. Conservation of plant germplasm, sources of plant material for the breeding; 3. Role of plant breeding, its history and development in the world and in the Czech Republic; 4. Biological and methodological principles of plant breeding (centers of origin of cultivated plant, sources of genetic diversity, influence of the way of plant propagation to the selection of breeding method); 5. Fundamental principles, genetic structure of the cultivars, variability of cultivated plants, important features of cultivated plants; 6. Conventional methods and techniques of plant breeding: selection (natural, controlled, individual, grouped, clone), crossing (techniques, lines, populations, plant heterozis, distant hybridization, pollen sterility, somatic hybridization); 7. Utilization of haploids and polyploids in the plant breeding; 8. Mutations in plant breeding (biological background, induction, detection of mutants); 9. Genetic manipulations in plant breeding, transgenic plants, DNA fingerprinting. manipulation with genetically modified plants; 10. Methods of plant breeding, quantitative and qualitative traits, heritability, selection indexes; 11. Fundamentals of genomic technologies (principles, PCR, molecular hybridization, DNA cloning, order of bases in the cloned DNA, molecular markers, protein markers); 12. Breeding aims (yield, quality, resistance to biotic and abiotic factors); 13. Breeding technique (breeding nursery, documentation, data collection and processing), new-breeding, maintenance of cultivars; 14. Organization of plant breeding and seed production, research, legislation. Literature and Equipment needed Recommended: Brown, J., Caligari, P. An introduction to plant breeding. Blackwell Publishing Cornwall, 2009. Recommended: Schlegel, R.H.J. Dictionary of plant breeding.. CRC Press, Boca Raton, FL, 2010. Recommended: Welsh, J.R. Fundamentals of plant genetics and breeding.. Wiley, New York, 1981. Recommended: Chloupek, O. Genetická diverzita, šlechtění a semenářství. Academia ČMT, Praha, 2008. Recommended: Houba, M., Hosnedl, V. Osivo a sadba, praktické semenářství. 2002. Recommended: Acquaah G. Principles of Plant Genetics and Breeding. Wiley - Blackwell, 2012. ISBN 978-0- 470-66476-6. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/FTGSE Plant Geography Type of Course Compulsory/ZT Recommended Year/Term 2/W Extent of Course 26p+0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Study Results Examination Written Form and Other Requirements

Course Guarantor doc. RNDr. Vladan Ondřej, Ph.D. Involvement of the Guarantor 25 % in Lecturing Lecturer doc. RNDr. Vladan Ondřej, Ph.D. (25 %), RNDr. Luboš Majeský Ph.D. (75 %)

Brief Course Annotation Plant distribution areas and its mapping (distribution maps). Plant endemism, MacArthur & Wilson's theory of island biogeography. Plant relict species. Plant diaspores (propagules) and their basic forms of dissemination, geohistorical aspects of plant migrations. Synanthropic plants. An outline of florogenesis (from Pre-Cambrium to the present), with an emphasis to the Central European Region. Floristic regions, vegetation zones. Characteristics of the major biomes of the Earth. Phytogeographical subdivision of the Czech Republic (Thermophyticum, Mesophyticum, Oreophyticum). Delimitation of vegetation belts. Cultivated plants and crop sepcies, Vavilov's centres of crop origins and genetic diversity. Genetic diversity, molecular phylogeny, in relation to the extension plants and their domestication and breeding.

Literature and Equipment needed Recommended: Cox, C. B. et Moore, P. D. Biogeography. An ecological and evolutionary approach. 5th ed. Blackwell Science, Cambridge, 1993. Recommended: Lomolino, M. V., Riedle, B. R. et Brown, J. K. Biogeography. 3rd ed. Sinauer Associates, Inc. Publisher Swederland, Massachusetts, 2006. Recommended: Archibold, O. W. Ecology of World Vegetation. Chapman & Hall, London, Glasgow etc., 1995. Recommended: Lomolino, M. V. et Henry, L. R. eds. Frontiers of Biogeography. New Directions in the Geography of Nature. Sinauer Associates, Inc. Publisher Swederland, Massachusetts, 2004. Recommended: Hendrych R. Fytogeografie. SPN Praha, 1984. Recommended: Klímovský, J. et Stýblo, P. eds. Nepůvodní druhy fauny a flóry České republiky. Praha. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/DPBE2 Master's Diploma Thesis 2 Type of Course Compulsory/ZT Recommended Year/Term 2/W Extent of Course 0+91cv+0 Hours 91 Credits 10 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Practicals Method Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Barbora Mieslerová, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Barbora Mieslerová, Ph.D. (100 %)

Brief Course Annotation The subject of study, topic of the Thesis. Literature overview. Research outline - general and particular aims. Getting familiar with basic methodology.

Literature and Equipment needed Recommended: Taiz, L. (ed.) (2018). Fundamentals of Plant Physiology. Oxford University Press. Recommended: Deacon, M.W. (1997). Modern Mycology. Oxford. Recommended: Lee, R.E. (ed.)(2018). Phycology. Cambridge University Press. Recommended: Schulze, E.-D. (ed.)(2019). Plant Ecology. Springer. Recommended: Agrios, G.N. (2005). Plant Pathology. Academic Press. Recommended: Singh, G. (ed.)(2018). Plant Systematics. New York. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/LPXE2 Laboratory Practice 2 Type of Course Compulsory/PZ Recommended Year/Term 2/W Extent of Course 0+1T/S+0 Hours 40 Credits 6 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Practicals Method Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Barbora Mieslerová, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Barbora Mieslerová, Ph.D. (100 %)

Brief Course Annotation Students will be introduced to daily lab work, presenting practical applications in particular fields. It takes place in specialized instutions/laboratories (basic and applied research) focusing on Plant Sciences.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/BSTSE Biostatistics Type of Course Compulsory/PZ Recommended Year/Term 2/W Extent of Course 26p+26cv+0 Hours 52 Credits 5 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Oral Form and Other Requirements

Course Guarantor RNDr. Martin Duchoslav, Ph. D. Involvement of the Guarantor 100 % in Lecturing Lecturer RNDr. Martin Duchoslav, Ph. D. (100 %)

Brief Course Annotation Lectures are focusing on the explanation of principles of statistical methods and correct interpretation of the results of statistical tests. The course absolvents should be able correctly (i) design the observations or experiments, (ii) collect, analyze and interpret data for the purposes of their theses, and (iii) understand statistical methods and results appearing in scientific literature. How the test works is illustrated on real data. Computer exercises with statistical software are integral parts of the course.

Lessons 1. Introduction, what is science, methodology, philosophy of science, deduction, induction 2. Population and sample, sampling design, types of variables, observations and experiments, descriptive and exploratory statistics 3. Probability, principles of hypothesis testing, theoretical and empirical distributions 4. Analyses of categorical data (chi-square, contingency tables, Fisher exact test, odds ratios, log-linear models) 5. Analyses of ordinal and quantitative data I: one and two samples, parametric and non-parametric tests (Monte Carlo), random and block designs, data transformation 6. Analyses of ordinal and quantitative data II: three and more samples, ANOVA: one-way, multifactor, with randomized blocks, with repeated measurements, nested 7. Relationships between quantitative variables: regression and correlation, linear and non-linear models, ANCOVA Literature and Equipment needed Basic: Komenda S. Biometrie.-. Vydavatelství UP, Olomouc, 1994. Basic: Lepš, J. Biostatistika. JČ Univerzita, České Budějovice, 1996. Basic: Hendl, J. Přehled statistických metod zpracování dat. Portál, Praha, 2006. ISBN 80-7367-123-9. Recommended: Gotelli N., Ellison A. A Primer of Ecological Statistics.-. Sinauer Associates, 2004. Recommended: Sokal R. & Rohlf F. Biometry.-. Freeman and Company, New York, 1995. Recommended: Zar J. H. Biostatistical analysis.-. Prentice Hall, Englewood Cliffs, 1998. Recommended: Quinn G.P. & Keough M.J. Experimental design and data analysis for biologist.-. Cambridge University Press, 2002. Recommended: Delventhal K. a kol. Kompendium matematiky.-. Universum, 2004. Recommended: Meloun M. & Militký J. Kompendium statistického zpracování dat.-. Academia, Praha, 2002. Recommended: Havránek, T. Statistika pro biologické a lékařské vědy.-. Academia, Praha, 1993. Recommended: Moore D. S. The basic practice of statistics.-. Freeman, New York, 2007. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/SRSE Plant Breeding – Special Part Type of Course Compulsory/ZT Recommended Year/Term 2/S Extent of Course 26p+13cv+0 Hours 39 Credits 4 Pre-requisites, Co-requisites, BOT/SROE Plant Breeding –General part Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. Ing. Petr Smýkal, Ph.D. Involvement of the Guarantor 50 % in Lecturing Lecturer doc. Ing. Petr Smýkal, Ph.D. (50 %), doc. Ing. Eva Křístková, Ph.D. (50 %)

Brief Course Annotation Breeding of: 1. Cereals, minor cereals; 2. Pulses; 3. Oil seeds, fiber crops, technical crops; 4. Root and tuber crops; 5. Forages; 6. Grasses; 7. Hops; 8. Vegetables; 9. Aromatic, spicy and medicinal plants; 10. Fruit trees; 11. Vine; 12. Ornamental plants; 13. Forest trees.

Literature and Equipment needed Recommended: Singh, R.J. (ed). Genetic resources, chromosome engineering, and crop improvement, vol. 3 Vegetable crops. USA, 2007. ISBN 978-0-8493-9646-5. Recommended: Chloupek, O. 2008. Genetická diverzita, šlechtění a semenářství. Academia ČMT, Praha, 2008. Recommended: Kole, C. (ed). Genome mapping and molecular breeding in plants, vol 1, Cereals and Millets.. Springer, 2006. Recommended: Kole, C. (ed). Genome mapping and molecular breeding in plants, vol. 2, Oilseeds. Springer, 2007. Recommended: Kole, C. (ed). Genome mapping and molecular breeding in plants, vol. 3, Pulses, Sugar and Tuber Crops.. 2007. Recommended: Kole, C. (ed). Genome mapping and molecular breeding in plants, vol. 4, Fruits and Nuts.. Springer, 2007. Recommended: Kole, C. (ed). Genome mapping and molecular breeding in plants, vol. 5, Vegetables.. Springer, 2007. Recommended: Kole, C. (ed). Genome mapping and molecular breeding in plants, vol. 6, Technical Crops.. Springer, 2007. Recommended: Kole, C. (ed). Genome mapping and molecular breeding in plants, vol. 7, Forest trees,. Springer, 2007. Recommended: Houba M., Hosnedl V. Osivo a sadba, praktické semenářství. Nakladatelství Ing. Martin Sedláček, 2002. Recommended: Acquaah G. Principles of Plant Genetics and Breeding. Wiley - Blackwell, 2012. ISBN 978-0-470-66476- 0. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/DPBE3 Master's Diploma Thesis 3 Type of Course Compulsory/ZT Recommended Year/Term 2/S Extent of Course 0+65cv+0 Hours 65 Credits 7 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Practicals Method Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Barbora Mieslerová, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Barbora Mieslerová, Ph.D. (100 %)

Brief Course Annotation The subject of study, topic of the Thesis. Literature overview. Research outline - general and particular aims. Getting familiar with basic methodology.

Literature and Equipment needed Recommended: Taiz, L. (ed.)(2018). Fundamentals of Plant Physiology. Oxford University Press. Recommended: Deacon, M.W. (1997). Modern Mycology. Oxford. Recommended: Lee, R.E. (ed.)(2018). Phycology. Cambridge University Press. Recommended: Schulze, E.-D. (ed.)(2019). Plant Ecology. Springer. Recommended: Agrios, G.N. (2005). Plant Pathology. Academic Press. Recommended: Singh, G. (ed.)(2018). Plant Systematics. New York. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course ZOO/ADE Data Analysis Type of Course Compulsory-Elective/PZ Recommended Year/Term 1/W Extent of Course 13p+13cv+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Written Form and Other Requirements

Course Guarantor doc. Mgr. Karel Weidinger, Dr. Involvement of the Guarantor 70 % in Lecturing Lecturer doc. Mgr. Karel Weidinger, Dr. (70 %), doc. Mgr. Vladimír Remeš, Ph. D. (30 %)

Brief Course Annotation Practical application of modern methods of data collection, analysis and presentation. Observation vs experiment, correlation vs causality, exploratory vs confirmatory methods. Biological vs statistical significance, effect size vs significance. Design of experiments, replication vs pseudoreplication. General/generalized linear models, types of response and explanatory variables, fixed vs random effects. Significance testing vs model selection. Visualization and presentation of results.

Literature and Equipment needed Recommended: Sokal R, Rohlf FJ. (1995). Biometry.. New York. Recommended: Statsoft Inc. Electronic Statistics Textbook.. Recommended: Manuály a dokumentace statistických programů.. Recommended: Grafen A, Hails R. (2002). Modern statistics for the life sciences. Oxford, 2002. ISBN 9780199252312.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course EKO/AZHOE Agroecology and Basics of Agricultural Management Type of Course Compulsory-Elective/PZ Recommended Year/Term 1/W Extent of Course 26p+0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Study Results Examination Written Form and Other Requirements

Course Guarantor prof. Dr. Ing. Bořivoj Šarapatka, CSc. Involvement of the Guarantor 70 % in Lecturing Lecturer prof. Dr. Ing. Bořivoj Šarapatka, CSc. (70 %), Ing. Radoslav Koprna, Ph.D. (30 %)

Brief Course Annotation The subject provides students with essential information on agroecosystems and their evolution, on the influence of environmental factors on organisms within agroecosystems, structure and dynamics of agrocenoses and productivity of agroecosystems. Attention is also paid to soil ecology in agroecosystems, environmental problems of agriculture and agroecological analysis of main production systems. The farmer's role in the landscape is explained to students in practical examples, as well as essential systems of management and the concept of sustainable agricultural systems.

Literature and Equipment needed Recommended: Gliessman, S.R. Agroecology - ecological processes in sustainable agriculture.. Ann Arbor Press, Chelsea, 357 pp., 1998. Recommended: Šarapatka, B. a kol. Agroekologie: východiska pro udržitelné zemědělské hospodaření. Olomouc, 2010. ISBN 978-80-87371-10-7. Recommended: Šarapatka, B., Urban, J. a kol. Ekologické zemědělství v praxi. Šumperk, 2006. ISBN 978-80- 9035-83-0-. Recommended: Barták, M., Kocourek, F., Vrabec, V. Obecná agroekologie.. TU Ostrava v programu PHARE, 134 pp., 1996. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course LRR/MVE Plant Mineral Nutrition Type of Course Compulsory-Elective/PZ Recommended Year/Term 1/S Extent of Course 13p+0+0 Hours 13 Credits 2 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lecture Method Study Results Examination Combined Form and Other Requirements

Course Guarantor Ing. Radoslav Koprna, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer Ing. Radoslav Koprna, Ph.D. (100 %)

Brief Course Annotation Essential Nutrients, Deficiencies, and Plant Disorders. Treating Nutritional Deficiencies. Soil, Roots, and Microbes. Nitrogen in the Environment. Nitrate Assimilation. Ammonium Assimilation. Amino Acid Biosynthesis. Biological Nitrogen Fixation. Sulfur Assimilation. Phosphate Assimilation. Cation Assimilation. Assimilation of Other Nutrients. The Energetica of Nutrient Assimilation.

Literature and Equipment needed Recommended: Procházka, J. Fyziologie rostlin. Academia, Praha, 1998. Recommended: Taiz, L., Zeiger, E. Plant Physiology. Sinauer Associates, Inc., Publisher, Sunderland, Massachussets., 2006. Recommended: Alberts, B., Bray, D., Johnson, A., Lewis, J., Raff, M., Roberts, K., Walter, P. Základy buněčné biologie. Espero Publishing, Ústí nad Labem, 2000.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/RBPEN Lessons from Plant Reproduction Biology Type of Course Compulsory-Elective Recommended Year/Term 2/W Extent of Course 26p+0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, Equivalence Study Results Examination Ex Form of Lecturing Lecture Method Study Results Examination Oral Form and Other Requirements

Course Guarantor doc. RNDr. Vladan Ondřej, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Vladan Ondřej, Ph.D. (100 %)

Brief Course Annotation Introduction, primary division of plant reproduction - Evolution of the plant reproduction - Development of reproduction organs and gametes - Development and differentiation of plant embryos, development of seeds and fruits - Cytological, epigenetic and genetic aspects of gametes production and embryogenesis - Processes connected with pollination and fertilisation; self-incompatibility - apomixes

Literature and Equipment needed Recommended: Trigiano, R.N., Gray, D.J. Plant development and biotechnology. CRC Press, 358pp., 2005. Recommended: Sharma H.P. Plant Embryology: Classical and Experimental. Pangbourne, 2009. ISBN 978-81- 7319-969-1.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/KVAPE Systematic Anatomy and Morphology of Vascular Plants Type of Course Compulsory-Elective Recommended Year/Term 1/S Extent of Course 13p+13cv+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Co Form of Lecturing Lectures Method Tutorials Study Results Examination Oral Form and Other Requirements

Course Guarantor PaedDr. Ing. Vladimír Vinter, Dr. Involvement of the Guarantor 100 % in Lecturing Lecturer PaedDr. Ing. Vladimír Vinter, Dr. (100 %)

Brief Course Annotation The course gives an overview on key features of Plant Anatomy and Morphology from the taxonomical and evolutionary viewpoint. Important anatomical and morphological characters of both vegetative and generative organs are discussed for distinct taxonomical groups (ferns, gymnosperms and flowering plants). Practical use of knowledge of anatomical and morphological characters in plant determination.

Literature and Equipment needed Basic: Vinter,V. Rostliny pod mikroskopem (Základy anatomie cévnatých rostlin). Olomouc, 2009. Recommended: Raven P. H., Evert R. F., Eichhorn S. E. Biology of Plants. W. H. Freeman and Company, New York., 1999. Recommended: Vinter V. a kol. e-learning morfologie rostlin http://botaska.upol.cz/Pages/Default.aspx. 2013. Recommended: http:/garden.upol.cz/system. Recommended: Štěpánková, J. ed. Květena České republiky (1988-2010), 1-8 díl, Academia, Praha.. Recommended: Vinter V. Přehled rostlinné morfologie. Olomouc, 2013. ISBN 978-80-244-3322-6. Recommended: Mártonfi P. Systematika cievnatých rastlín. Košice, 2007. Recommended: Novák, F.A. Vyšší rostliny 1, 2. ČSAV, Praha, 1972. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/DENE Dendrology Type of Course Compulsory-Elective Recommended Year/Term 1/W Extent of Course 13p+26cv+0 Hours 39 Credits 4 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Combined Form and Other Requirements

Course Guarantor RNDr. Radim Jan Vašut, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer RNDr. Radim Jan Vašut, Ph.D. (100 %) Brief Course Annotation The broad diversity of woody species cultivated in Europe is presented in the course. Special emphasis is put on ca. 300 species growing in Central Europe with explain other (rare) related taxa. Presented species will be characterised in major biological aspects: taxonomical and nomenclatorial issues, phytogeographic and ecological background. Important part of the course are excursion to botanical gardens of Olomouc (BG of Palacký University, BG Flora/Rozárium) and parks and streets of Olomouc.

Systematic overview: 1. Conifers: Pinaceae, Cupressaceae, Taxaceae 2. ancestral leaf woody species: Magnoliales (Magnolia, Liriodendron, Drymis), Ranunculales (Berberis, Mahonia) 3. Fagales (Quercus, Fagus, Betula, Alnus, Carpinus, Juglans, Nothofagus, etc.) 4. Malpighiales (Salix, Populus), Malvales (Tilia, etc.), 5. part of Rosales (Ulmaceae, Celtidaceae, Moraceae, Elaeagnaceae) 6. Rosaceae part 1 (tribe Pyreae) 7. Rosaceae excl. Pyreae (Prunus, Spiraea, Rubus, etc.) 8. Fabales (Robinia, Caragana, Gleditsia, Laburnum etc.; subtropical genera such as Caesalpinia, Delonix, Albizia etc.) 9. Sapindales (Acer, Aesculus, Ptelea, Ailanthus, Melia, Koelreuteria, etc.) 10. Cornaceae (Cornus), Ericaeae, Oleaceae (Fraxinus, Syringa, Jasminum, Forsythia, etc.) 11. Bignoniaceae (Catalpa, Campsis, Jacaranda, etc.), Paulowniaceae (Paulownia), Lamiaceae (Buddleja, Callicarpa) 12. Adoxaceae (Viburnum) and Caprifoliaceae (Lonicera, Weigela, Kolkwitzia, etc.) Literature and Equipment needed Recommended: Farjon, A. An Atlas of the World's Conifers. Brill Academic Pub, 2013. Recommended: Dirr, M. A. Encyclopedia of Trees and Shrubs. Timber Press, Potland, London, 2008. Recommended: van Gelderen D. M., de Jong P. C., Oterdoom H. J. Maples of the World. Timber Press, Inc., 2005. Recommended: Hieke K. Moravské zámecké parky a jejich dřeviny. SZN, Praha, 1985. Recommended: Grimshaw, J., Bayton, R. New Trees: recent introductions to cultivation. RBG Kew, 2009. Recommended: Coombes, A. J., Debreczy, Z. The Book of Leaves: A leaf-by-leaf guide to six hundred of the world's great trees. New Holland Publishers, 2011. Recommended: Johnson O., More D. Tree Guide: The Most Complete Field Guide to the Trees of Britain and Europe. HarperCollins UK, 2004. ISBN 978-0007191635. Recommended: Coombes A. J. Trees. Dorling Kindersley, London, 2000. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/RBROE Radiobiology Type of Course Compulsory-Elective Recommended Year/Term 2/W Extent of Course 26p+0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Tutorials Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Vladan Ondřej, Ph.D Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Vladan Ondřej, Ph.D. (100 %)

Brief Course Annotation The important part of course will be focused on the organization of cell nucleus, DNA damage and repair in consequence to radiation. The course brings also an overview on radiation protection and legislation of protection in Czech republic.

- Introduction to composition of matter, fundamentals of physics, physical values - Types of radiation, interactions of direct and non-direct ionizing radiation, radioisotopes - Biological impact of ionizing radiation, deterministic and stochastic effects - Organization of cell nucleus - Interaction of radiation with DNA, DNA repair - Effect of radiation on genome organization and stability - Cytotoxicology of ionizing radiation - Sources of ionizing radiation - Basic aims and principals of radiation protection - Legislation of radiation protection, nuclear law

Literature and Equipment needed Further literature: Nenoi M. Current topics in ionizing radiation research. Rijeka, 2012. ISBN 978-953-51- 0196-3. Recommended: Rozlívka, Z., Filip, J., Koláček, P. Radiační ochrana pro vybrané pracovníky významných průmyslových zdrojů. Učební texty pro přípravu personálu JEZ, ČEZ, 75pp., 2002. Recommended: Vyhláška SÚJB č. 307/2002 Sb.. Recommended: Ondřej V. Základy radiobiologie. Olomouc, 2013. ISBN 978-80-244-3426-1. Recommended: Zákon č. 18/1997 Sb.. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course EKO/ZZEE Basic Ecology Type of Course Compulsory-Elective Recommended Year/Term 1/W Extent of Course 26p+0+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Lectures Method Study Results Examination Combined Form and Other Requirements

Course Guarantor Mgr. Monika Mazalová, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer Mgr. Monika Mazalová, Ph.D. (100 %)

Brief Course Annotation Introduction to the study of ecology: basic terms, definitions and methods, proximate and ultimate causation. Ecological factors and sources. Environment and organisms, adaptations, evolution, convergence, divergence, speciation. Population, dynamics of populations, interactions of populations with environmental factors. Community, interactions between species, food webs, species richness, diversity, ecological stability. Ecosystems, flows of energy and nutrient cycling, biotic and abiotic components, functional processes, ecological mechanisms, trophic interactions, productivity, decomposition. Actual problems in environmental and conservation ecology.

Literature and Equipment needed Basic: Storch, D., Mihulka, S. Úvod do současné ekologie.. Portál s.r.o., Praha, 2000. Basic: Laštůvka, Z., Krejčová, P. Základy ekologie,BRNO, 2000,184 s. Recommended: Begon, M., Harper, J., Townsend, C. Ekologie - jedinci, populace a společenstva. Olomouc: Vydavatelství Univerzity Palackého, 1997.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/FPRX1 Field Practice 1 Type of Course Compulsory-Elective Recommended Year/Term 1/S Extent of Course 0 +1T/S + 0 Hours 40 Credits 6 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Practicals Method Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Vladan Ondřej, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Vladan Ondřej, Ph.D. (100 %)

Brief Course Annotation Basic theoretical information from field trials, familiarization with available agricultural techniques and technologies; practical part: plant cultivation, experimentation, plant crossing (obtaining F1 hybrids), basics of phenotyping and evaluation of experiments including statistical methods.

Literature and Equipment needed Recommended: Laurie Brown. (2008). Applied Principles of Horticultural Science. Recommended: Clive Ireland. (2010). Experimental Statistics for Agriculture and Horticulture. Recommended: John-David Warren. (2015). The Nature of Crops.

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/FPRX2 Field Practice 2 Type of Course Compulsory-Elective Recommended Year/Term 2/W Extent of Course 0 +1T/S + 0 Hours 40 Credits 6 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Practicals Method Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Vladan Ondřej, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer doc. RNDr. Vladan Ondřej, Ph.D. (100 %)

Brief Course Annotation Linking to field experiments from BOT/FPRX1. Growing plants in greenhouse, experiments with F1 hybrids, evaluation of experiments

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/VPAU 1 Flying Seminars in Botany 1 Type of Course Optional Recommended Year/Term 1/S Extent of Course 13p+ 0 +0 Hours 13 Credits 1 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Co Form of Lecturing Lectures Method Study Results Examination Colloquium Form and Other Requirements

Course Guarantor RNDr. Michal Hroneš, Ph.D. Involvement of the Guarantor 50 % in Lecturing Lecturer RNDr. Michal Hroneš, Ph.D. (50 %), RNDr. Martin Duchoslav, Ph.D. (50 %)

Brief Course Annotation The aim of the course is to bring the students new advances in particular fields of Plant Sciences usually presented by invited specialists from other research institutions. Partly, specialized field excursions are organized.

Literature and Equipment needed

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/VPBSB Flying Seminars in Botany 2 Type of Course Optional Recommended Year/Term 2/W Extent of Course 13p+ 0 +0 Hours 13 Credits 1 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Lectures Method Study Results Examination Combined Form and Other Requirements

Course Guarantor RNDr. Michal Hroneš, Ph.D. Involvement of the Guarantor 50 % in Lecturing Lecturer RNDr. Michal Hroneš, Ph.D. (50 %), RNDr. Martin Duchoslav, Ph.D. (50 %)

Literature and Equipment needed

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/FYTEX Phytopathological excursion Type of Course Optional Recommended Year/Term S Extent of Course 0+3D/S +0 Hours 24 Credits 4 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Excursion Method Study Results Examination Combined Form and Other Requirements

Course Guarantor doc. RNDr. Barbora Mieslerová Ph.D. doc. RNDr. Michaela Sedlářová PhD. Involvement of the Guarantor 50 %, 50 % in Lecturing Lecturer doc. RNDr. Barbora Mieslerová Ph.D. (50 %), doc. RNDr. Michaela Sedlářová PhD. (50 %)

Brief Course Annotation We plan to visits of several localities (UKZUS, botanical gardens, arboretums, research institutes, universities, and private companies)

Literature and Equipment needed Recommended: Nienhaus, F., Butin, H., Böhmer, B. Atlas chorob a škůdců okrasných dřevin. Praha, 1998. Recommended: Böhmer B., Wohanka W. Atlas chorob a škůdců okrasných rostlin, ovoce a zeleniny. Praha, 2003. Recommended: Kazda, J. et al. Choroby a škůdci polních plodin, ovoce a zeleniny. Praha, 2003. Recommended: Rod, J. Choroby zeleniny a brambor. Praha, 1997. Recommended: Ellis, M.B., Ellis J.P. Microfungi on land plants. Richmond Publishing, UK, 1997. Recommended: Hluchý, M., Ackermann, P., Zacharda, M., Bagar, M., Jetmarová, E., Vaněk, G. Obrazový atlas chorob a škůdců ovocných dřevin a révy vinné. Brno, 1997. Recommended: Häni, F., Popow, G., Reinhard, H., Schwarz, A., Tanner, K., Vorlet, M. Obrazový atlas chorob a škůdců polních plodin. Praha, 1993. Recommended: Schwarz, A., Elter, J. (Eds.) . Obrazový atlas chorob a škůdců zeleniny. Brno, 1996. Recommended: Rod, J., Hluchý, M., Zavadil, K., Prášil, J., Somssich, I., Zacharda, M. Obrazový atlas chorob a škůdců zeleniny střední Evropy. Brno, 2005. Recommended: Patologické změny rostlinných pletiv (Sedlářová M ., Vinter V.) Recommended: Terénní fytopatologické exkurze (Sedlářová M., Mieslerová B.)

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Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/MOBEX Biodiversity hotspots of Central Moravia Type of Course Optional Recommended Year/Term S Extent of Course 0+ 5D/S +0 Hours 40 Credits 2 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Pre-Ex Form of Lecturing Excursion Method Study Results Examination Written Form and Other Requirements

Course Guarantor doc. RNDr. Bohumil Trávníček, Ph D. Involvement of the Guarantor 25 % in Lecturing Lecturer doc. RNDr. Bohumil Trávníček, Ph D. (25 %), RNDr. Michal Hroneš Ph.D. (20 %), RNDr. Alois Čelechovský PhD. (20 %), RNDr. Martin Duchoslav, Ph.D. (25 %), doc. RNDr. Robin Kundrata, Ph.D. (10 %). Brief Course Annotation Field trips, identification of species and vegetation types, environmental, conservation and geographical consequences.

Literature and Equipment needed Recommended: Šafář J. a kol. : Olomoucko. In: Mackovčin P. a Sedláček M. (eds.). Chráněná území ČR, svazek VI. 2003. Praha, 2004. Recommended: Čeřovský J. (ed.). Červená kniha ohrožených a vzácných druhů rostlin a živočichů ČR a SR. Vol. 5. Vyšší rostliny. Recommended: Kubát K., Hrouda L., Chrtek J. jun., Kaplan Z., Kirschner J. & Štěpánek J. Klíč ke květeně České republiky [Key to the flora of the Czech republic]. Praha, 2002. Recommended: Květena České republiky, Vol. 1-8. Academia, Praha, 1988-2010. Academia, Praha. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course BOT/DENEX Dendrological excursion Type of Course Optional Recommended Year/Term S Extent of Course 0+3D/S+0 Hours 24 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Co Form of Lecturing Excursion Method Study Results Examination Combined Form and Other Requirements

Course Guarantor RNDr. Radim Jan Vašut, Ph.D. Involvement of the Guarantor 100 % in Lecturing Lecturer RNDr. Radim Jan Vašut, Ph.D. (100%)

Brief Course Annotation Aim of this course is demonstration of main taxonomic groups of cultivated trees and shrubs in Czechia. This course is practical and it focuses on demonstration of living plant species and their key characteristics. During 3 day-long excursions, we will visit 3 botanic gardens or arboreta in the region of Moravia and Silesia and we will demonstrate common as well as rare woody species. The aim is to demonstrate species diversity and morphological variation of cultivated trees and shrubs in broader context.

Literature and Equipment needed Recommended: Hieke K. České zámecké parky a jejich dřeviny. SZN, Praha, 1984. Recommended: Hieke K. Dřeviny českých a moravských zámeckých parků. SZN Praha, 1984. Recommended: Horáček P. Encyklopedie listnatých stromů a keřů. Computer Press, Brno, 2007. Recommended: Koblížek J. Jehličnaté a listnaté dřeviny našich zahrad a parků. Sursum, Tišnov, 2000. ISBN 80-85799-86-3. Recommended: Pilát A. Jehličnaté stromy a keře našich zahrad a parků. ČSAV, Praha, 1964. Recommended: Červenka M., Cigánová K. Klíč k určování dřevin podle pupenů a větviček. SPN Praha, 1980. Recommended: Pilát A. Listnaté stromy a keře našich zahrad a parků. ČSAV, Praha, 1953. Recommended: Hieke K. Moravské zámecké parky a jejich dřeviny. SZN, Praha, 1985. Recommended: Hieke K. Praktická dendrologie, Vol. 1-2. SZN Praha, 1978. Recommended: Coombes A. J. Stromy. Knižní klub, Praha, 2006. Recommended: Johnson O., More D. Tree Guide: The Most Complete Field Guide to the Trees of Britain and Europe. HarperCollins UK, 2004. ISBN 978-0007191635. Recommended: Coombes A. J. Trees. Dorling Kindersley, London, 2000. Information About Part-Time or Distance Study Form Extent of consultations (Workshops) Hours Information About Contacting the Lecturer

Version as of 1 February, 2019 B-III – Course Characteristics Name of Course VCJ/ATB1 English Terminology for Biology 1 Type of Course Optional Recommended Year/Term 1/S Extent of Course 0+26cv+0 Hours 26 Credits 3 Pre-requisites, Co-requisites, - Equivalence Study Results Examination Ex Form of Lecturing Tutorials Method Study Results Examination Combined Form and Other Requirements

Course Guarantor Mgr. Helena Kadlecová Involvement of the Guarantor 100 % in Lecturing Lecturer Lecturers of the Department of Foreign Languages FS UP

Brief Course Annotation 1. Working with a dictionary 2. Problems of biotechnology 3. Presentations 4. Cell 5. Organ Systems 6. Homeostasis 7. Microbes and diseases

Literature and Equipment needed Recommended: Jones, M. Advanced Sciences: Biology 1. Cambridge, 2005. ISBN 0-521-78719-X. Recommended: Roberts, M.B.V. Biology for Life. Recommended: REDMAN, S. English Vocabulary in Use: Pre-Intermediate and Intermediate: New Edition. Cambridge: CUP, 2003. Recommended: Dawson, B., Honeysett, I. Revise GCSE Biology. London, 2005. ISBN 1-84315-502-8.

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• 1988-1993: Faculty of Science, UP Olomouc, Systematic Biology and Ecology, Mgr. • 2001: doctoral study, Zoology, Faculty of Science, UP Olomouc – Ph.D. • 2002: Zoology – RNDr. Professional History Since University Graduation 1993 – 1995: Nature Conservation Agency of the Czech Republic, Olomouc 1995 – 2009: assistant professor, since 2009 lector – Department of Zoology, Faculty of Science, UP Olomouc Experience Regarding Supervision of Qualification and Rigorous Theses 11 bachelor theses, 12 master theses

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 9 25 Acquisition the Procedure

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals • Čelechovský A. (2019): Micomitra stupida – first records from the Czech Republic and Slovakia (Diptera: Bombyliidae). Klapalekiana, 55: 3–5. Praha. • Čelechovský A. (2019): Za motýly střední Moravy, s. 10–11. In: Kuras T., Mazalová M. & Weber L. (eds.), XII. Lepidopterologické kolokvium, Program a sborník abstraktů. Faculty of Science Univerzity Palackého v Olomouci, 31.ledna 2019, 36 s. • Čelechovský A. (2016): First records of Phthiria gaedii and Systoechus gradatus (Diptera: Bombyliidae) from Slovakia. Klapalekiana, 52: 1–2. Praha. • Čelechovský A., Chmela J. & Chmela M. (2015). Makrolepidoptera Pozděchova na Valašsku (Česká republika). Macrolepidoptera near Pozděchov in Moravian Walllachia (Czech Republic). Acta Carp. Occ. 6: 139–157. Vsetín. • Starý J. & Čelechovský A. (2015): New faunistic records of Limoniidae and Tipulidae (Diptera) from the Czech Republic. – Acta Mus. Siles. Sci. Natur., 64: 111–113, 2015. Activities Abroad

Signature Date 18.12.2019

Information on University Education 1994: Faculty of Science, UP Olomouc, Systematic Biology and Ecology, specialisation Botany, Mgr. 2000: Faculty of Science, UP Olomouc, Ph.D. Botany

Professional History Since University Graduation 1997– recent; Department of Botany, Faculty of Science, UP Olomouc, assistant professor

Experience Regarding Supervision of Qualification and Rigorous Theses 20 bachelor theses, 30 master theses, 3 Ph.D. theses (+2)

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Hroneš, M., Hrachová Macurová, S., Hradílek, Z., Hekera, P., Duchoslav, M. (2019): Female-biased sex ratio despite the absence of spatial and niche segregation between sexes in alpine populations of dioecious Salix lapponum (Salicaceae). - Alpine Botany (https://doi.org/10.1007/s00035-018-0213-6) (20%) Hradilová, I., Duchoslav, M., Brus, J.,.Smýkal, P. (2019): Variation in wild pea (Pisum sativum subsp. elatius) seed dormancy and its relationship to the environment and seed coat traits. - PeerJ 6: e6263. (15%) Popelka, O., Sochor, M., Duchoslav, M. (2019): Reciprocal hybridization between diploid Ficaria calthifolia and tetraploid Ficaria verna subsp. verna: evidence from experimental crossing, genome size and molecular markers. - Bot. J. Linn. Soc. 189: 293-310 (40%) Duchoslav, M., Fialová, M., Jandová, M. (2017): The ecological performance of tetra-, penta- and hexaploid geophyte Allium oleraceum in reciprocal transplant experiment may explain the occurrence of multiple-cytotype populations. - Journal of Plant Ecology 10: 569-580. (50%) Ježilová, E., Hlaváčková-Nožková, V., Duchoslav, M. (2015): Photosynthetic characteristics of three ploidy levels of Allium oleraceum L. (Amaryllidaceae) differing in ecological amplitude. - Plant Spec. Biol. 30: 212-224. (50%)

Version as of 1 February, 2019 Activities Abroad

Signature Date 21. 01. 2020

Information on University Education 1981-1986 Biophysics and Chemical Physics (BCHF), Faculty of Science, UP Olomouc 1988 RNDr., Biophysics and Chemical Physics, Faculty of Science, UP Olomouc Professional History Since University Graduation 1987-1988 study visit, ÚEB AV ČR Olomouc 1989-1991 VŠÚZ Olomouc (researcher) 1991 ÚEB AV ČR Olomouc (researcher) January 1992 – November 1992 program TEMPUS, lab prof. Jean Guern, C.N.R.S., Institut des Sciences Vegetales, Gif-sur-Yvette, France. December 1992 – October 1993 ÚEB AV ČR Olomouc (researcher) November 1993 – February 1997 Doctoral study (Ph.D.), Prof. Jean Guern, C.N.R.S., Institut des Sciences Vegetales, Gif-sur-Yvette, France. Ph.D. at Universite de Paris-Sud XI v Orsay. March 1997 – August 1997 Laboratory of Growth Regulators (ÚEB AV ČR and UP Olomouc) (researcher) October - December 1997 Study visit in lab Dr. Raju Datla, Plant Biotechnology Institute, National Research Council of Canada, Saskatoon, Canada September 1997 – April 2000 Postdoc in lab Prof. Vipen K. Sawhney, Department of Biology, University of Saskatchewan, Saskatoon, Canada. May 2000 – August 2003 Researcher in lab Prof. Elizabeth Van Volkenburgh, Department of Botany, University of Washington, Seattle, USA. September 2003 – December 2009 assistant professor, Department of Cell Biology and Genetics, Faculty of Science, Palacký University Olomouc January 2010 – 2016 associate professor, Laboratory of Growth Regulators, Faculty of Science, UP Olomouc and ÚEB AV ČR Olomouc January 2013 – now researcher, ÚEB AV ČR Olomouc (0,7) 2016 – now Professor, Laboratory of Growth Regulators, Faculty of Science, UP Olomouc & ÚEB AV ČR Olomouc Garant of study program 1501T029 Experimental Biology of Plants, Faculty of Science UP Olomouc, 2016 – now Experience Regarding Supervision of Qualification and Rigorous Theses 41 bachelor theses, 16 master theses, 5 Ph.D. theses

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Plant Physiology 2009 MZLU Brno WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 440 400 Acquisition the Procedure Plant Physiology 2016 MZLU Brno Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals

Version as of 1 February, 2019 Publications Balarynová J, Fellner M (2019) Expression of genes encoding PIP aquaporins in tomato seeds exposed to blue light and mercury. Biologia Plantarum 63: 1-10 (1.424) Balarynová J, Danihlík J, Fellner M (2018) Changes in plasma membrane aquaporin gene expression under osmotic stress and blue light in tomato. Acta Physiologiae Plantarum 40: 27-34 (1.364) Omidvar V, Mohorianu I, Dalmay T, Zheng Y, Fei Z, Pucci A, Mazzucato A, Večeřová V, Sedlářová M, Fellner M (2017) Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant. PlosONE 12: e0170715 (2.806) Omidvar V, Mohorianu I, Dalmay T, Fellner M (2015) Identification of miRNAs with potential roles in regulation of anther development and male-sterility in 7B-1 male-sterile tomato mutant. BMC Genomics 16: 878-893 (3.986) Omidvar V, Mohorianu I, Dalmay T, Fellner M (2015) miRNA regulation of abiotic stress-response in 7B-1 male-sterile tomato mutant. The Plant Genome 8: 1-13 (3.933) Omidvar V, Fellner M (2015) DNA methylation and transcriptomic changes in response to different lights and stresses in 7B-1 male-sterile tomato. PlosONE 10(4): e0121864 (3.534) Humplík JF, Bergougnoux V, Jandová M, Šimura J, Pěnčík A, Tomanec O, Rolčík J, Novák O, Fellner M (2015) Endogenous abscisic acid promotes hypocotyl growth and affects endoreduplication during dark-induced growth in tomato (Solanum lycopersicum L.). PlosONE 10(2): e0117793 (3.534) Humplík JF, Turečková V, Fellner M, Bergougnoux V (2015) Spatio-temporal changes in the endogenous abscisic acid content during etiolated growth and photomorphogenesis in tomato seedlings (Solanum lycopersicum L.). Plant Signaling & Behavior 10: 8, e1039213 (1,395) Leading of secondary school students in projects Otevřená věda and Badatel – totally 16 students 2007 – translation of the book KLONOVÁNÍ GENU A ANALÝZA DNA. ÚVOD, T. A. BROWN, 5. ed., Blackwell Publishing, 2006 Activities Abroad 1. EC Training fellowship in Easter Europe (TEMPUS Program): CNRS, Institute of Plant Sciences, Gif-sur-Yvette, France; 8 months 2. Ph.D. scholarship: CNRS, Institute of Plant Sciences (Gif-sur-Yvette) and University of Paris XI (Orsay), France; 3,5 years 3. Postdoctoral fellowship: University of Saskatchewan, Department of Biology, Saskatoon, Canada; 2 years and 8 months 4. Postdoctoral research associate: University of Washington, Department of Botany, Seattle, USA; 3 years and 4 months Signature Date 22. 1. 2020

Information on University Education 2001– Mgr., Faculty of Science, UP Olomouc 2004 – Ph.D.., Botany, Faculty of Science, UP Olomouc 2011 – doc., Botany, Faculty of Science, UP Olomouc

Professional History Since University Graduation Department of Botany, Faculty of Science, UP Olomouc: 2004 – recent 2004-2011– assistant professor, Department of Botany Faculty of Science, UP Olomouc 2011 – associate professor, Department of Botany, Faculty of Science, UP Olomouc

Experience Regarding Supervision of Qualification and Rigorous Theses 23 bachelor theses, 13 master theses, 1 Ph.D. thesis

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Botany 2011 UP Olomouc WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 439 441 Acquisition the Procedure

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Šebela, M.; Jahodářová, E.; Raus, M.; Lenobel, R.; Hašler, P. (2018): Intact cell MALDI-TOF mass spectrometric analysis of Chroococcidiopsis cyanobacteria for classification purposes and identification of possible marker proteins. - Plos One 13: e0208275. Hašler, P.; Pentecost, A.; Jahodářová, E.; Dvořák, P.; Pouličková, A. (2018): Taxonomic revision of Ulva montana (Lightfoot 1777) and description of a new genus of Lightfootiella (Cyanophyceae, Chroococcaceae). – Phytotaxa 362: 173-186. Hašler, P.; Casamatta, D.; Dvořák, P.; Poulíčková, A. (2017): Jacksonvillea apiculata (Oscillatoriales, Cyanobacteria) gen. & sp. nov.: a new genus of filamentous, epipsamic cyanobacteria from North Florida. - Phycologia 56: 284-295. Hašler, P.; Dvořák, P.; Poulíčková, Aloisie (2014): A new genus of filamentous epipelic cyanobacteria, Johansenia.- Preslia 86: 81-94. Hašler, P.; Dvořák, P.; Johansen, J. R.; et al.(2012): Morphological and molecular study of epipelic filamentous genera Phormidium, Microcoleus and Geitlerinema (Oscillatoriales, Cyanophyta/Cyanobacteria). - Fottea 12: 341-356.

Activities Abroad University of North Florida – 1 month, 2012 Signature Date 30. 1. 2020

Courses in the Particular Study Program and the Manner of Involvement in Their Lecturing, or Other Involvement in the Operation of the Program BOT/VPAU Flying Seminars in Botany 1 – garant, lecturer, 50 % BOT/VPBSB Flying Seminars in Botany 2 – garant, lecturer, 50 % BOT/MOBEX Biodiversity hotspots of Central Moravia – tutorials leading, 20 %

Information on University Education Bc.: Faculty of Science, UP Olomouc, Systematic Biology and Ecology (2006–2009) Mgr.: Faculty of Science, UP Olomouc, Botany (2009–2011) RNDr.: Faculty of Science, UP Olomouc, Botany (2017) Ph.D.: Faculty of Science, UP Olomouc, Botany (2011–2018) Professional History Since University Graduation 2012 – now: Department of Botany, Faculty of Science, UP Olomouc, lecturer Experience Regarding Supervision of Qualification and Rigorous Theses Bachelor theses 1 (+3), master theses 3 (+1) Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 91 99 Acquisition the Procedure

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Hroneš M., Hrachová Macurová S., Hradílek Z., Hekera P. & Duchoslav M. (2019): Female-biased sex ratio despite the absence of spatial and niche segregation between sexes in alpine populations of dioecious Salix lapponum (Salicaceae). - Alpine Botany 129: 1-9. Kobrlová L. & Hroneš M. (2019): The first insight into the evolution of genome size in the borage family - complete data set of Boraginaceae in the Czech Republic. - Botanical Journal of the Linnaean Society 189: 115-131. Dančák M., Hroneš M., Sochor M. & Sochorová Z. (2018): Thismia kelabitiana (Thismiaceae), a new unique Fairy Lantern from Borneo potentially threatened by commercial logging. - PLOS ONE 13(10):e0203443. Hroneš M., Rejžek M., Sochor M., Svátek M., Kvasnica J., Egertová Z., Pereira J. T., Nilus R. & Dančák M. (2018): Two new species of Thismia subsect. Odoardoa (Thismiaceae) from Borneo. - Plant Ecology and Evolution 151: 110-118. Activities Abroad Institute for Biodiversity and Environmental Research, University Brunei Darussalam, Brunei Darussalam (30 days) Institute of Sylviculture and Forest Protection, University of West Hungary, Sopron, Hungary (60 days) Signature Date 6. 1. 2020

Information on University Education 1994-2000: Mgr. – Faculty of Science, UP Olomouc, Teaching of biology and chemistry for secondary schools 2000-2003: Ph.D. – Faculty of Science, UP Olomouc, Botany 2003: RNDr. – Faculty of Science, UP Olomouc, Botany

Professional History Since University Graduation 2003-2004: Laboratory of Growth Regulators, Faculty of Science, UP and AV ČR Olomouc; researcher 2005-2011: Department of Botany, Faculty of Science, UP Olomouc; researcher 2011- now: Department of Botany, Faculty of Science, UP Olomouc; assistant professor

Experience Regarding Supervision of Qualification and Rigorous Theses 3 bachelor theses, 1 master thesis, 1 Ph.D. thesis

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals 47 publications on WOS (h-index = 14). Lebeda A.et al. 2019. Research gaps and challenges in the conservation and exploitation of North American wild lettuce (Lactuca L.) germplasm. – Crop Science 59: 2337-2356. Braun U. et al. 2019. Phylogeny and taxonomy of Golovinomyces orontii revisited. – Mycological Progress 18(3):335-357 Petrželová I. et al. 2017. Confirmation of Peronospora agrimoniae as a distinct species. – European Journal of Plant Pathology 147: 887-896. Kitner M. et al. 2015. Coincidence of virulence shifts and changes in the population genetic structure of Pseudoperonospora cubensis populations revealed by multilocus analyses. – Plant Pathology 64: 1461-1470. Sharma R. et al. 2015. Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora. – BMC Genomics 16:741 Kitner M. et al. 2015. Genetic diversity in Israeli natural populations of three predominantly self-pollinating wild Lactuca (L. serriola, L. saligna, L. aculeata) species. - Genetic Resources and Crop Evolution 67(2): 991-1008

Version as of 1 February, 2019 Activities Abroad 2012, 3 months: Germany, Biodiversity and Climate Research Centre (BiK-F) & the Goethe Univ., Frankfurt am Main, Department of Biological Sciences, Institute of Ecology, Evolution and Biodiversity 2014, 1 month: Hungary, Department of Plant Pathology, Plant Protection Institute of the Centre for Agricultural Research of the Hungarian Academy of Sciences 2014, 1 month: Germany, Biodiversity and Climate Research Centre (BiK-F) & the Goethe Univ., Frankfurt am Main, Department of Biological Sciences, Institute of Ecology, Evolution and Biodiversity

Signature Date 17.1.2020

Information on University Education 1995-2000: Slovak University of Agriculture in Nitra – Special Zootechnics (Ing.) 2003-2008: MZLU Brno – Special Plant Production – Genetics and Plant Breeding (Ph.D.)

Professional History Since University Graduation Od 1. 4. 2011: UP Olomouc, Faculty of Science, Laboratory of Growth Regulators, researcher 20. 10. 2009 – 31. 3. 2011: VÚCHS s.r.o. Rapotín, Research Director, Head of Feed and Animal Nutrition. 1. 7. – 31. 9. 2009: OSIVA s.r.o., Regional Sales Manager for Seed Sales, Vysočina Region. 1. 10. 2000 – 30. 6. 2009: OSEVA PRO s.r.o., Researcher, winter rape breeder, curator of plant genetic resources collection Experience Regarding Supervision of Qualification and Rigorous Theses 2 bachelor theses

Field of Habilitation Procedure Year of Degree University Conducting Impact of Publications Acquisition the Procedure WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting Acquisition the Procedure

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals

14 utility models for fertilizers and combined fertilizers

DOLEŽAL K., NISLER J., STRNAD M., ZATLOUKAL M., KOPRNA R. (2018) Patent (US, JAR) 1,2,3-thiadiazol- 5yl-urea derivatives, use thereof for regulating plant senescence and preparations containing these derivatives

VOLLER J., DOLEŽAL K., KOPRNA R., PLÍHALOVÁ L., POPA I., SPÍCHAL L., STRNAD M., ZATLOUKAL M. (2017) – Licenční smlouva, přípravek na optimalizaci odnožování Aucyt Start.

KOPRNA R., KUČERA V., KOLOVRAT O., VYVADILOVÁ M., KLÍMA M. (2005): Development of initial self- incompatible lines with improved seed quality in winter oilseed rape (Brassica napus) for hybrid breeding. In. Czech Journal of Genetics and Plant Breeding. Vol. 41., No. 3., s.105-111, ISSN 1212-1975. KOPRNA R., KLÍMA M. (2007): Production of improved self-incompatible lines of winter oilseed rape (Brassica napus L.) with convenient seed quality for habrid breeding using of microspore culture technique. In: Proceedings No.1., The 12th International Rapeseed Congress, Wuhan, China, March 26-30 2007, 48-51.

Version as of 1 February, 2019 KOPRNA R., KUČERA V., MACHÁČKOVÁ I., HORÁČEK J., EHRENBERGEROVÁ J., (2009): Development of Fertility Restorers of Winter Oilseed Rape with Low Glucosinolate Content for the CMS Ogu-INRA System, Czech Journal of Genetics and Plant Breening, 45, 2009 (3), 123-127, ISSN 1212-1975. MACHÁČKOVÁ I., KOPRNA R., KUČERA V. (2011): Development of fertility restorers of winter oilseed rape with low glucosinolate content for the CMS Ogu-INRA system. 13th International Rapeseed Congress, Prague, 599 – 601, ISBN: 978-80-87065-32-7 HANOSOVÁ H., KOPRNA R., VALÍK J., KNOPPOVÁ L., FRÉBORT I, DZUROVÁ L., GALUSEXA P. (2015): Improving field production of ergot alkaloids by application of gametocide on rye host plants. In: New Biotechnology, 750 1-8, 1871-6784. KOPRNA R, DE DIEGO N, DUNDÁLKOVÁ L, SPÍCHAL L. (2016) Use of Cytokinins as Agrochemicals. Bioorgan. Med. Chem. 24, 484–492; DOI: 10.1016/j.bmc.2015.12.022 http://ac.els- cdn.com/S0968089615301887/1-s2.0-S0968089615301887-main.pdf?_tid=d0db83b6-b3a6-11e5-ac8b- 00000aacb35e&acdnat=1451996655_56e60c1edc62679ae8d63ba93d5151c8

B –Chapters in Books

BARANYK P., FÁBRY A. a kol. (2007): Řepka- pěstování- využití- ekonomika. Profi Press, Praha, 2007, ISBN 978-80- 86726-26-7, s. 57-62: Ideotyp odrůdy, Typy odrůd a metody jejich šlechtění, 208 s. PRUGAR J. a kol. (2008): Kvalita rostlinných produktů na prahu 3. tisíciletí. Výzkumný ústav pivovarnický a sladařský, a.s. ve spolupráci s KJRP ČAZV, Praha, 2008, 327 s., ISBN 978-80-86576-28-2. (kapitola 6.3. Olejniny, podkapitola 6.3.1. Řepka olejná, s.169-172.)

Z – pilot plant, proven technology, variety, breed: KOPRNA R. a kol: Odrůda ozimé řepky Oponent (2006) KOPRNA R. a kol: Odrůda ozimé řepky Opus (2007) KOPRNA R. a kol: Odrůda ozimé řepky Oksana (2007) MACHÁČKOVÁ, I., TYLLER, V., TYLLER, R., KOPRNA, R., BUZEK, Z., ŠMIROUS, P., KUČERA, V., VYVADILOVÁ, M., KLÍMA, M. (2009): Odrůda řepky ozimé BENEFIT SG-C 7405 KOPRNA R. a kol. (2016): Tevasil – ostropestřec mariánský (25 %) KOPRNA R. a kol. (2017): Albus – ostropestřec mariánský (50 %) KOPRNA R. a kol. (2017): Tevadian – ostropestřec mariánský (50 %)

Activities Abroad 1993, 1994 - study stay in the Netherland (2 x 3 weeks) 1997 - study stays in Finland (2 months) 2001 - one month study stay in Germany (DSV Lippsatd, Holzsee NPP, P.H. Petersen) 2010 - foreign language course in Gateway School of English - international certificate Signature Date 3.2.2020

Information on University Education 1982 – Ing.: Agricultural University Brno, Agronomical Faculty, Horticulture 2000 – Ph.D.: Faculty of Science, UP Olomouc, Botany

Professional History Since University Graduation 1982 – 1994: VŠÚZ Olomouc, Smržice (SEMO s.r.o.) – breeder, sales department worker 1994 – 2004: VÚRV Praha – Ruzyně, Genetics and Breeding, Genebank Olomouc 2004 – now: UP Olomouc, Faculty of Science, Department of Botany

Experience Regarding Supervision of Qualification and Rigorous Theses 7 bachelor theses, 2 master theses (+ 3)

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Horticulture 2009 Mendel University Brno WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 409 Acquisition the Procedure - - - Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals 58 publications on WOS, H-index 15

Jemelková, M., Kitner, M., Křístková, E., Beharav, A., Lebeda, A. 2015. Biodiversity of Lactuca aculeata germplasm assessed by SSR and AFLP markers, and resistance variation to Bremia lactucae. Biochemical Systematics and Ecology 61: 344-356. (20%) Kitner M., Majeský A., Křístková E., Jemelková M., Lebeda A., Beharav A. 2015. Genetic structure and diversity in natural populations of three predominantly selfpollinating wild Lactuca species in Israel. Genetic Resources and Crop Evolution 62(7): 991-1008. (16%) Lebeda A., Křístková E., Sedláková B., McCreight J.D., Coffey M.D. 2016. Cucurbit powdery mildews: methodology for objective determination and denomination of races. Eur. J. Plant. Pathology, 144: 399 – 410. (20%) Lebeda, A., Křístková, E., Sedláková, B., Štěpánková, J., Widrlechner, M.P., 2017. Race-specificity in interactions between Cucumis melo germplasm and Pseudoperonospora cubensis. Acta Horticulturae 1151, 203-210. (20%) Jemelková, M., Kitner, M., Křístková, E., Doležalová, I., Lebeda, A., 2018. Genetic variability and distance between Lactuca serriola L. populations from Sweden and Slovenia assessed by SSR and AFLP markers. Acta Botanica Croatica. 77 (2), 172–180. (20%)

Version as of 1 February, 2019 Lebeda, A., Křístková, E., Kitner, M., Majeský, Ľ., Doležalová, I., Khoury, C.K., Widrlechner, M.P., Hu, J., Carver, D., Achicanoy, H.A., Sosa, C.C. 2019. Research gaps and challenges in the conservation and use of North American wild lettuce germplasm. Crop Sci. 59:2337-2356. (10%)

Activities Abroad

Signature Date 14.2. 2020

Experience Regarding Supervision of Qualification and Rigorous Theses 6 bachelor theses, 6 master theses Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Zoology 2019 UP Olomouc WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 241 Acquisition the Procedure

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Kundrata, R., Blank, S.M., Prosvirov, A.S., Sormova, E., Gimmel, M.L., Vondracek, D. & Kramp, K. (2019) One less mystery in Coleoptera systematics: the position of Cydistinae (Elateriformia incertae sedis) resolved by multigene phylogenetic analysis. Zoological Journal of the Linnean Society, 187: 1259–1277. (25 %) Kundrata, R., Prosvirov, A.S., Vondracek, D. & Sormova, E. (2019) Congruence between molecular data and morphology: phylogenetic position of Senodoniini (Coleoptera: Elateridae). Insects, 10: 231. (35 %) Kundrata, R. & Bocak, L. (2019) Molecular phylogeny reveals the gradual evolutionary transition to soft-bodiedness in click-beetles and identifies Sub-Saharan Africa as a cradle of diversity for Drilini (Coleoptera: Elateridae). Zoological Journal of the Linnean Society, 187: 413–452. (50 %) Kundrata, R., Gunter, N. L., Janosikova, D. & Bocak, L. (2018) Molecular evidence for the subfamilial status of Tetralobinae (Coleoptera: Elateridae), with comments on parallel evolution of some phenotypic characters. Arthropod Systematics & Phylogeny, 76: 137–145. (45 %) Kundrata, R., Jäch, M. A. & Bocak, L. (2017) Molecular phylogeny of the Byrrhoidea-Buprestoidea complex (Coleoptera, Elateriformia). Zoologica Scripta, 46: 150–164. (40 %) Activities Abroad Senckenberg Deutsches Entomologisches Institut, Müncheberg, Germany, 2018: 2 months, Ege University, Izmir-Bornova, Turkey, 2011–2012: 2 x 1,5 months Signature Date 15. 2. 2020

Information on University Education 1970-1975: Agricultural University Brno, Agronomical Faculty, Horticulture 1977-1978: Charles University, Faculty of Science, postgraduate study, Mycology 1981-1982: CSc., VÚRV Praha-Ruzyně, Special Plant Production 1993: DrSc., Agricultural University Brno, Agriculture and Forest Phytopathology 1994: doc., Agricultural University Brno, Greengrocery 1999: prof., MZLU Brno, Agricultural Botany Professional History Since University Graduation 1975-1991: Head of Phytopathological Laboratory, VŠÚZ Olomouc, Breeding Station Smržice 1991-1994: Head of Phytopathological Laboratory, SEMO s.r.o. Smržice 1994-1995: associate professor, Department of Botany, Faculty of Science, UP Olomouc 1995-2010: Head of Department of Botany, Faculty of Science, UP Olomouc 1999: professor 2010-now: Head of division of Phytopathology and Microbiology, Department of Botany, Faculty of Science, UP Olomouc

Experience Regarding Supervision of Qualification and Rigorous Theses 47 bachelor and master theses, 20 Ph.D. theses Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Greengrocery 1994 Agriculture University WOS Scopus Others Brno Field of Nominating Procedure Year of Degree University Conducting 2036 1868 560 Acquisition the Procedure Agricultural Botany 1999 Mendel University Brno Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Total number of scientific and professional publications: total 1138; 299 publications in 73 foreign resp. international scientific journals (mostly impacted), 330 works on WOS (All Databases), h-index = 31; 25 papers in 8 domestic scientific journals; editor / author of 43 scientific and professional monographs, books and proceedings

Publications (2016-2019): Lebeda A., Křístková E., Sedláková B., McCreight J.D., Coffey M.D. 2016. Cucurbit powdery mildews: methodology for objective determination and denomination of races. Eur. J. Plant. Pathology 144: 399 – 410. Lebeda, A., Křístková, E., Štěpánková, J., Sedláková, B., Widrlechner, M.P., 2016: Response of Cucumis melo accessions to isolates of Pseudoperonospora cubensis with different levels of virulence. Scientia Horticulturae 200: 45-54.

Version as of 1 February, 2019 Lebeda, A., Křístková, E., Roháčková, J., Sedláková, B., Widrlechner, M.P., Paris, H.S., 2016. Race-specific resistance of Cucurbita germplasm to Pseudoperonospora cubensis. Euphytica 212: 145-156. Trojanová, Z., Sedlářová, M., Gulya, T.J., Lebeda, A., 2017. Methodology of virulence screening and race characterization of Plasmopara halstedii, and resistance evaluation in sunflower – a review. Plant Pathology 66: 171-185. Thomas, A., Carbone, I., Lebeda, A., Ojiambo, P.S., 2017. Virulence structure within the population of Pseudoperonospora cubensis in the United States. Phytopathology, 107: 777-785. Lebeda, A., Křístková, E., Sedláková, B., McCreight, J.D., Kosman, E. 2018: Virulence variation of cucurbit powdery mildews in the Czech Republic – population approach. Eur. J. Plant Pathology, 152: 309-326. Rsaliyev, A.S., Amirkhanova, N.T., Rametov, N.M., Pahratdinova, Zh.U., Ojiambo, P.S., Lebeda, A. 2018. Pseudoperonospora cubensis virulence and pathotype structure in Kazakhstan. Plant Pathology 67: 1924-1935. Spring, O., Gomez-Zeledon, J., Hadziabdic, D., Trigiano, R.N., Thines, M., Lebeda, A. 2018: Biological characteristics and assessment of virulence diversity in pathosystems of economically important biotrophic oomycetes. Critical Reviews in Plant Sciences 37: 439-495. Lebeda, A., Kitner, M., Mieslerová, B., Křístková, E., Pavlíček, T. 2019: The occurrence of Leveillula lactucae-serriolae on Lactuca serriola in Jordan. Phytopathologia Mediterranea 58: 359-367. Lebeda, A., Křístková, E., Kitner, M., Majeský, L., Doležalová, I., Khoury, C.K., Widrlechner, M.P., Hu, J., Carver, D., Achicanoy, H.A., Sosa, Ch.C. 2019: Research gaps and challenges in the conservation and use of North American wild lettuce germplasm. Crop Science 59: 2337-2356.

Research projects (investigator, co-investigator): 37 projects domestic (e.g. GAČR, NAZV, MŠMT, FRVŠ, MH, OPVK) and foreign (e.g.. EU, OECD, Tempus, Socrates/Erasmus, DFG, IAG, HRI).

Activities Abroad A total of 57 medium and long-term scholarships at foreign workplaces and expeditions (Algeria, Australia, China, France, Georgia, Holland, Chile, India, Italy, Israel, Japan, South Africa, Canada, Korea, Costa Rica, Mauritius, Germany, New Zealand, Peru, Portugal, Spain, Sweden, Taiwan, Thailand, Turkey, Uruguay, USA, United Kingdom); total about 78 months. Signature Date 22. 1. 2020

Information on University Education Bc.: Pavol Jozef Šafárik University in Košice, Faculty of Science, 2003 Mgr.: Pavol Jozef Šafárik University in Košice, Faculty of Science, Botany and physiology of plants, 2005 RNDr.: Pavol Jozef Šafárik University in Košice, Faculty of Science, Botany, 2006 Ph.D.: Faculty of Science, UP Olomouc, Botany 2013

Professional History Since University Graduation 2005-2007: Pavol Jozef Šafárik University in Košice, Faculty of Science, Department of Botany and Plant Physiology, assistant professor 2013-2015: Palacký University Olomouc, Faculty of Science, Department of Botany, postdoc 2015-now: Palacký University Olomouc, Faculty of Science, Department of Botany, researcher

Experience Regarding Supervision of Qualification and Rigorous Theses 2 bachelor theses (+1), 3 master theses (+1)

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Hořák, D., Ferenc, M., Sedláček, O., Motombi, F. N., Svoboda, M., Altman, J., Albrecht, T., Nana, E. D., Janeček, Š., Dančák, M.,, Majeský, Ľ. , Lltonga, E. N., Doležal, J. (2019): Forest structure determines spatial changes in avian communities along an elevational gradient in tropical Africa. J Biogeogr. 2019; 00: 1– 13. https://doi.org/10.1111 Ferenc, M., Sedláček, O., Tropek, R., Albrecht, T., Altman, J., Dančák, M., Doležal, J., Janeček, Š., Maicher, V., Majeský, Ľ. , Motomb,i F.N., Murkwe, M., Sáfián, S., Svoboda, M., Hořák, D. (2018): Something is missing at the bottom: Importance of coastal rainforests for conservation of trees, birds and butterflies in the Mount Cameroon area. African Journal of Ecology 56: 679-683. Majeský, Ľ. , Krahulec, F., Vašut, R. (2017):How apomictic taxa are treated in current taxonomy: A review - Taxon, 66 (5): 1017 - 1040, https://doi.org/10.12705/665.3 Salih, R. H. M., Majeský, Ľ. , Schwarzacher, T., Gornall, R., Heslop-Harrison, P. (2017): Complete chloroplast genomes from apomictic Taraxacum (Asteraceae): Identity and variation between three microspecies - PloS ONE 12(2): e0168008, https://doi.org/10.1371/journal.pone.0168008

Version as of 1 February, 2019 Majeský, Ľ. , Vašut, R. , Kitner, M. , Trávníček, B. (2012): The pattern of genetic variability in apomictic clones of Taraxacum officinale indicates the alternation of asexual and sexual histories of apomicts. - PLoS ONE 7(8): e41868. doi:10.1371/journal.pone.0041868

Activities Abroad 2005: Belgium, Universiteit Gent, Faculteit Wetenschapen, Vakgroep Biologie, 5 months 2011: Germany, Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK), 3 months 2014: Germany, Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK), 2 months 2015: Germany, Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK), 3 months

Signature Date 17.02.2020

Information on University Education Mgr. (1993-1998), Teaching of biology for secondary schools, Faculty of Science, Ostrava University Ph.D. (1999-2004), Phytotechnics (Special Plant Production), Agronomical faculty, Mendel University Brno

Professional History Since University Graduation 1998 – 1999: Teacher on primary school (biology-geography), ZŠ Kamenec, Ostrava 2002 – 2018: researcher - ZVÚ Kroměříž, s.r.o., Agrotest fyto, s.r.o. 2018: assistant professor, Depratment of Botany, Faculty of Science, UP Olomouc

Experience Regarding Supervision of Qualification and Rigorous Theses Bachelor thesis (+1), consultant of Ph.D. theses

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Matušinský, P., Leišová-Svobodová, L., Svačinová, I., Havis, N., Hess, M. & Tvarůžek, L. 2019. Population genetic structure of Microdochium majus and Microdochium nivale associated with foot rot of cereals in the Czech Republic and adaptation to penthiopyrad. EUROPEAN JOURNAL OF PLANT PATHOLOGY: 155, 1–12. Trdá, L., Janda, M., Macková, D.,Pospíchalová, R., Dobrev, P.I., Burketová, L. & Matušinský, P. 2019. Dual mode of the saponin aescin in plant protection: antifungal agent and plant defense elicitor. FRONTIERS IN PLANT SCIENCE. 10:1448.doi: 10.3389/fpls.2019.01448 Matušinský, P. Svačinová, I.; Jonavičiené, A., Tvarůžek, L. 2017. Long-term dynamics of causative agents of stem base diseases in winter wheat and reaction of Czech Oculimacula spp. and Microdochium spp. populations to prochloraz. EUROPEAN JOURNAL OF PLANT PATHOLOGY 148:199-206. Matusinsky, P., Zouhar, M., Pavela, R., Novy, P. 2015. Antifungal effect of five essential oils against important pathogenic fungi of cereals. INDUSTRIAL CROPS AND PRODUCTS 67: 208-215. Havis, N.D., Brown, J. K.M., Clemente, G., Frei, P., Jedryczka, M., Kaczmarek, J., Kaczmarek, M., Matušinský, P.McGrann, G.R.D., Pereyra, S., Piotrowska, M., Sghyer, H., Tellier, A., Michael Hess, 2015. Ramulariacollo-cygni - an emerging pathogen of barley crops. PHYTOPATHOLOGY 105 (7): 895-904.

Version as of 1 February, 2019 Activities Abroad Justus-Liebig-Universität in Giessen, Germany, program Erasmus (4 months) Federal Institute for Agriculture in Alpine Regions Gumpenstein, Austria, 1 month Estonian Crop Research Institute Jogeva, Estonia, 1 month

Signature Date

Professional History Since University Graduation 2009 – now: assistant professor, Department of Ecology and Environmental Sciences, Faculty of Science, UP Olomouc holder of authorizations of MŽP under §45i ZOPK and §67 ZOPK

Experience Regarding Supervision of Qualification and Rigorous Theses 5 bachelor theses, 2 master theses (+2) Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting Acquisition the Procedure

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals MAZALOVÁ M., KAŠÁK J. & KURAS T. (2012): Annotated entomological bibliography of the Praděd National Nature Reserve (Hrubý Jeseník Mts.). – Čas. Slez. Muz. Opava (A), 61: 23-42. KAŠÁK J., MAZALOVÁ M., ŠIPOŠ J. & KURAS T. (2013): The effect of alpine ski-slopes on epigeic beetles: does even a nature-friendly management make a change? – J. Insect Conserv., 17: 975-988., RADA S., MAZALOVÁ M., SIPOS J., KURAS T. (2014) Impacts of mowing, grazing and edge effect on Orthoptera of submontane graslands: perspectives for biodiversity protection. - Polish Journal of Ecology, 62: 123-138., MAZALOVA M., SIPOS J., RADA S., KASAK J., SARAPATKA B., KURAS T. (2015) Responses of grassland arthropods to various biodiversity-friendly management practises: Is there a compromise? – Eur. J. Entomol., 112(4): 734– 746., KASAK J., MAZALOVA M., SIPOS J., KURAS T. (2015) Dwarf pine: invasive plant threatens biodiversity of alpine beetles – Biodivers. Conserv., 24(10): 2399-2415. KAŠÁK J., MAZALOVÁ M., ŠIPOŠ J., FOIT J., HUČÍN M., KURAS T. (2019) Habitat preferences of Ceruchus chrysomelinus, an endangered relict beetle of the natural Central European montane forests. – Insect Conserv. Divers., 12: 206-215. Activities Abroad 2014, 2015 – Universiti Brunei Darussalam Signature Date 21.2.2020

Version as of 1 February, 2019 C-I – Staffing Arrangements University Palacký University Olomouc University Facility Faculty of Science Name of Study Program Plant Biology Name and Surname Barbora Mieslerová Titles doc. RNDr., Ph.D. Year of Birth 1973 Type of pp. Extent 40 Until N Involvement with the University Type of Involvement with the University Facility pp. Extent 40 Until N Conducting the Study Program Other Simultaneous Commitments with Other Universities as a Type of Extent Member of Academic Staff Employment Relationship — Courses in the Particular Study Program and the Manner of Involvement in Their Lecturing, or Other Involvement in the Operation of the Program Garant studijního programu. BOT/GME General Mycology – lecturer, 50 % BOT/ZFPE Phytopathology – lecturer, 15 % BOT/BIKRE Principles of Classification of Plants – garant, lecturer, tutorials leading, 25 % BOT/FYTEX Phytopathological excursion – garant, tutorials leading, 50 % BOT/DPBE1 Master's Diploma Thesis 1 – garant, tutorials leading, 100 % BOT/DPBE2 Master's Diploma Thesis 2 – garant, tutorials leading, 100 % BOT/DPBE3 Master's Diploma Thesis 3 – garant, tutorials leading, 100 % BOT/LPXE1 Laboratory Practice 1 – garant, tutorials leading, 100 % BOT/LPXE2 Laboratory Practice 2 – garant, tutorials leading, 100 %

Information on University Education 1991-1996: Mgr., Systematic Biology and Ecology, Faculty of Science, UP Olomouc 1996-1999: Ph.D., Botany, Faculty of Science, UP Olomouc 2013: doc., Phytosanitary, Agronomical Faculty, Mendel University, Brno Professional History Since University Graduation 1999-now: Department of Botany, Faculty of Science, UP Olomouc (1999- 2007 researcher, 2007- 2013 assistant professor, 2013 – associate professor)

Experience Regarding Supervision of Qualification and Rigorous Theses 15 bachelor theses (+4), 14 master theses (+4) Field of Habilitation Procedure Year of Degree University Conducting Impact of Publications Acquisition the Procedure Phytosanitary 2013 Mendel University Brno WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 414 Acquisition the Procedure h- index 15 Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Lebeda, A., Kitner, M., Mieslerová, B., Křístková, E., Pavlíček, T.: The occurrence of Leveillula lactucae-serriolae on Lactuca serriola in Jordan. Phytopathologia Mediterranea 58, 2019, 359-367. Trecate, L., Sedláková, B., Mieslerová, B., Manstretta, V., Rossi, V., Lebeda, A.: Effect of temperature on infection and development of powdery mildew on cucumber. Plant Pathology, 68, 2019, 1165-1178. Nožková, V., Mieslerová, B., Luhová, L., Piterková, J., Novák, O., Špundová, M., Lebeda, A. (2019): Effect of heat- shock pre-treatment on tomato plants infected by powdery mildew fungus. Plant Protection Science 55 (1): 31-42. Lebeda, A., Mieslerová, B., Huszár, J., Sedláková, B. (2017): Padlí kulturních a planě rostoucích rostlin. Agriprint, Olomouc, 368 s. ISBN 978-80-87091-69-2. (35%). Mieslerová, B., Sedlářová, M., Lebeda, A. (2016): Houby a houbám podobné organismy v biotechnologiích. VUP, Olomouc, 200 s. ISBN 978-80-244-4983-8. (70%)

Version as of 1 February, 2019 Lebeda, A., Mieslerova, B., Jankovics, T., Kiss, L., van der Linde, E. J., 2015. First detection of tomato powdery mildew caused by Oidium neolycopersici in South Africa. South African Journal of Botany 99: 153-157. Lebeda, A., Mieslerová, B., Petřivalský, M., Luhová, L., Špundová, M., Sedlářová, M., Nožková-Hlaváčková, V., Pink, D.A.C. (2014): Resistance mechanisms of wild tomato germplasm to infection of Oidium neolycopersici. European Journal of Plant Pathology 138/3, SI: 569-596. DOI 10.1007/s10658-013-0307-3. (30%)

Activities Abroad One week stages: UWE Bristol, Hungarian Academy of Science, Hungary,Technical University of Munich (Freising- Weihenstephan, Germany). Signature Date 21.1.2020

Version as of 1 February, 2019 C-I – Staffing Arrangements University Palacký University Olomouc University Facility Faculty of Science Name of Study Program Plant Biology Name and Surname Vladan Ondřej Titles doc. RNDr., Ph.D. Year of Birth 1975 Type of pp Extent 40 Until N Involvement with the University Type of Involvement with the University Facility pp Extent 40 Until N Conducting the Study Program Other Simultaneous Commitments with Other Universities as a Type of Extent Member of Academic Staff Employment Relationship — Courses in the Particular Study Program and the Manner of Involvement in Their Lecturing, or Other Involvement in the Operation of the Program BOT/BRGME Biotechnology of Plants – garant, lecturer, tutorials leading, 100 % BOT/FTGSE Plant Geography – garant, lecturer, 25 % BOT/RBROE Radiobiology – garant, lecturer, 100 % BOT/ RBPEN Lessons from Plant Reproduction Biology – garant, lecturer, 100 % BOT/FPRX1 Field Practice 1 – garant, tutorials leading, 100 % BOT/FPRX2 Field Practice 2 – garant, tutorials leading, 100 % Information on University Education Mgr.: Faculty of Science, UP Olomouc (1994-1999), Teaching of biology and chemistry for secondary schools Ph.D.: Faculty of Science, UP Olomouc (1999-2002), Botany doc.: Faculty of Science, UP Olomouc, Botany, 2011

Professional History Since University Graduation 2002-2003: Agritec, s.r.o. - researcher 2003-2007: Institute of Biophysics AV ČR Brno – researcher 2008-2011: Department of Botany, Faculty of Science, UP Olomouc - researcher 2010-2011: Laboratory of Genom Integrity, Faculty of Science, UP Olomouc – researcher 2010-now: Head of Department of Botany, Faculty of Science, UP Olomouc 2011-now: Department of Botany, Faculty of Science, UP Olomouc – associate professor

Experience Regarding Supervision of Qualification and Rigorous Theses 13 bachelor theses, 7 master theses, 1 Ph.D. thesis, 1 rigorose thesis. Garant of studying programs: 1501R001 Biology, 7504T029 Teaching of Biology for Secondary Schools

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Švécarová M., Navrátilová B., Hašler P., Ondřej V. (2019) Artificial induction of tetraploidy in Humulus lupulus L. using oryzalin. Acta Agrobot 72(2):1764 Švécarová M., Navrátilová B., Ondřej V. (2018) In vitro polyploidization of Ajuga reptans L. using oryzalin. Acta Biol Crac ser. Bot 60(2): 69-73. Hasler, P., Ondrej, V., Svecarova, M., Sedlarova, M., Vaidova, B. (2017) Tritium influence on morphology, reactive oxygen species production and catalase gene expression in Pseudendoclonium basilense and Stigeoclonium nanum (Chlorophyta). Fottea 17 (1): 127-135. Petrželová I., Jemelková M., Doležalová I., Ondřej V., Kitner M. (2017) Identification of a rust disease of giant knapweed in the Czech Republic. Plant Protect Sci 53: 153-158.

Version as of 1 February, 2019 Petrželová I., Kitner M., Doležalová I., Ondřej V., Lebeda A. (2015) First report of a basil downy mildew caused by Peronospora belbahrii in the Czech Republic. Plant Disease 99(3): 418. Navrátilová B., Švécarová M., Ondřej V. (2018): Metodika in vitro polyploidizace pomocí oryzalinu u rostlin chmele (Humulus lupulus L.) Certifikovaná metodika. Activities Abroad A total of 9 short-term to long-term study stays: 2000 (2 months), 2014 (1 month), 2015 (week) Department of Plant Cytology and Embryology, Jagiellonian University Kraków, Polsko 2004-2005 Swammerdam Institute for Life Sciences, University of Amsterdam, 6 months 2010 INRA Dijon, France, 10 days 2011 European Master in Radiation Biology course – Belgian Center for Nuclear Research, Mol, Belgium, 2 weeks 2012 Belgian Center for Nuclear Research, Mol, 1 month 2016 Department of Cell Biology, Silesian University, Katowice, Poland, 1 month 2017 Department of Cell Biology, Silesian University, Katowice, Poland, 1 week

Signature Date 17. 2. 2020

Professional History Since University Graduation 2003 – 2012 researcher, 2012 – now associate professor, Department of Zoology, Faculty of Science, UP Olomouc Experience Regarding Supervision of Qualification and Rigorous Theses 8 bachelor theses, 9 master theses, 2 Ph.D. theses

Field of Habilitation Procedure Year of Degree University Conducting Impact of Publications Acquisition the Procedure Zoology 2012 UP Olomouc WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 987 1055 Google Acquisition the Procedure Scholar 1537 Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Remeš, V., R. P. Freckleton, J. Tokolyi, A. Liker, and T. Székely. 2015. The evolution of parental cooperation in birds. Proceedings of the National Academy of Sciences USA 112:13603-13608. (85 %)

Friedman, N. R., and V. Remeš. 2015. Rapid evolution of elaborate male coloration is driven by visual system in Australian fairy-wrens (Maluridae). Journal of Evolutionary Biology 28:2125-2135. (50 %)

Remeš, V., and B. Matysioková. 2016. Survival to independence in relation to pre-fledging development and latitude in songbirds across the globe. Journal of Avian Biology 47:610-618. (80 %)

Friedman, N. R., and V. Remeš. 2016. Global geographic patterns of sexual size dimorphism in birds: support for a latitudinal trend? Ecography 39:17-25. (60%)

Friedman, N. R., and V. Remeš. 2017. Ecogeographical gradients in plumage coloration among Australasian songbird clades. Global Ecology and Biogeography 26:261-274. (40%) Activities Abroad 2017: Cornell University, Ithaca, USA (6 months) 2013-2014: University of California, Berkeley, USA (10 months) 2008-2009: Australian National University, Canberra, Australia (6 months)

Signature Date 17.2.2020

Experience Regarding Supervision of Qualification and Rigorous Theses Bachelor theses 7 (+1), master theses 6

Field of Habilitation Year of Degree University Conducting Impact of Publications Procedure Acquisition the Procedure WOS Scopus Others Field of Nominating Year of Degree University Conducting 152 200 Procedure Acquisition the Procedure h-index 10 h-index 8

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Lebeda, A., Křístková, E., Sedláková, B., McCreight, J.D. & Kosman, E. (2018): Virulence variation of cucurbit powdery mildews in the Czech Republic – population approach. Eur J Plant Pathol. 152: 309-326. Lebeda, A., Mieslerová, B., Huszár, J. & Sedláková, B. (2017): Padlí kulturních a planě rostoucích rostlin. Agriprint. Lebeda, A., Křístková, E., Sedláková, B., McCreight, J.D. & Coffey, M.D. (2016): Cucurbit powdery mildews: Methodology for objective determination and denomination of races. European Journal of Plant Pathology 144: 399- 410. Pirondi, A., Kitner, M., Lotti, M., Sedláková, B., Lebeda, A. & Collina, M. (2016): Genetic structure and phylogeny of Italian and Czech populations of the cucurbit powdery mildew fungus Golovinomyces orontii inferred by multilocus sequence typing. Plant Pathology 65: 959-967. Trecate, L., Sedláková, B., Mieslerová,B., Manstretta, V., Rossi & V., Lebeda, A. (2019): Effect of temperature on infection and development of powdery mildew on cucumber. Plant Pathology 68(6): 1165-1178. DOI: 10.1111/ppa.13038 Activities Abroad

Signature Date 16. 1. 2020

Version as of 1 February, 2019 C-I – Staffing Arrangements University Palacký University Olomouc University Facility Faculty of Science Name of Study Program Plant Biology Name and Surname Michaela Sedlářová Titles doc. RNDr., Ph.D. Year of Birth 1973 Type of pp. Extent 40 Until N Involvement with the University Type of Involvement with the University Facility pp. Extent 40 Until N Conducting the Study Program Other Simultaneous Commitments with Other Universities as a Type of Extent Member of Academic Staff Employment Relationship — Courses in the Particular Study Program and the Manner of Involvement in Their Lecturing, or Other Involvement in the Operation of the Program BOT/ZFPE Phytopathology – lecturer, 20 % BOT/FYTEX Phytopatological excursion – garant, tutorials leading, 50 % Information on University Education Bc.: Faculty of Science, UP Olomouc, Systematic Biology and Ecology, 1995 Mgr.: Faculty of Science, UP Olomouc, Botany, 1997 RNDr.: Ph.D., Faculty of Science, UP Olomouc, Botany, 2001 doc.: AF MZLU Brno, Phytosanitary Professional History Since University Graduation 2000-2007: researcher, Department of Botany, Department of Biochemistry, Faculty of Science, UP Olomouc, 2007-2009: lecturer and researcher, Department of Botany, Faculty of Science, UP Olomouc 2009-now: associate professor, Department of Botany, Faculty of Science, UP Olomouc

Experience Regarding Supervision of Qualification and Rigorous Theses 17 bachelor theses, 12 master theses, 1 Ph.D. thesis (+2), 4 SVOČ; Member of the Ph.D. study committee of Agricultural and Forestry Phytopathology and Plant Protection at ČZU Prague Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Phytosanitary 2009 MZLU Brno WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 569 523 Acquisition the Procedure

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Co-author of a textbook for universities (1), for elementary / secondary schools (1), 1 textbook, 4 interactive teaching atlases, educational portal FytoChem. 56 publications on WOS, ORCID 0000-0003-2319-1033,

Kumar, A., Prasad, A., Sedlářová, M., Pospíšil, P. (2019): Organic radical imaging in plants: Focus on protein radicals. Free Radical Biology and Medicine 130: 568-575. Drábková Trojanová, Z., Sedlářová, M., Pospíchalová, R., Lebeda, A. (2018): Pathogenic variability of Plasmopara halstedii infecting sunflower in the Czech Republic. Plant Pathology 67(1): 136-144. Trojanová, Z., Sedlářová, M., Gulya, T.J., Lebeda, A. (2017): Methodology of virulence screening and race characterization of Plasmopara halstedii, and resistance evaluation in sunflower – a review. Plant Pathology 66, 171- 185. Sedlářová, M., Kubienová, L., Drábková Trojanová, Z., Luhová, L., Lebeda, A., Petřivalský, M. (2016): The role of nitric oxide in development and pathogenesis of biotrophic phytopathogens – downy and powdery mildews. In: Wendehenne. D. (Ed.): Nitric Oxide and Signaling in Plants. Advances in Botanical Research 77: 263-283. Prasad, A., Ferretti, U., Sedlářová, M., Pospíšil, P. (2016): Singlet oxygen production in Chlamydomonas reinhardtii under heat stress. Scientific Reports 6: 20094 (12 pp.). DOI: 10.1038/srep20094

Version as of 1 February, 2019 Participation in solving of 19 projects, (co) organized 5 international conferences, Meeting of Young Mycologists;

Activities Abroad 13 short-term internships abroad (professional internships, one Erasmus training stay), consultant of Ph.D. students from Al-Farabi Kazakh National University, closer cooperation with Szent István University in Gödöllő (Hungary), University of Hohenheim (Germany)

Signature Date 17. 1. 2020

Information on University Education Ing.: Plant Biotechnology, VŠZ + Faculty of Science, UK Praha, 1994 Ph.D.: Faculty of Science, UK Praha, Physiology and Anatomy of Plants, 1999 doc.: Faculty of Science, UP Olomouc, Botany, 2017

Professional History Since University Graduation Since 1.9. 2018 Faculty of Science, UP Olomouc, associate professor 2011-2018: Faculty of Science, UP Olomouc, assistant professor 2004-2011: Agritec Plant Research s.r.o., Šumperk, researcher 2001-2003: Institute für Biologie III, Albrecht Ludwig University of Freiburg, Germany, researcher 1999-2001: Institute of Plant Science, Plant Genetics, Swiss Institute of Technology, ETH Zurich, Switzerland, researcher 1994-1999: Department of Physiology and Anatomy of Plants, Faculty of Science, UK Praha, assistant professor

Experience Regarding Supervision of Qualification and Rigorous Theses 15 bachelor theses, 14 master theses, 5 Ph.D. theses

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Botany 2017 UP Olomouc WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 68, 67, Acquisition the Procedure h=20, h=19, 1104 1278 Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals • Hradilová I, Duchoslav M, Brus J, Pechanec V, …. Smýkal P. (2019) Variation in wild pea (Pisum sativum subsp. elatius) seed dormancy and its relationship to the environment and seed coat traits. PeerJ 6:e6263 (IF2018=2.353) • Janská A, Pecková E, Sczepaniak B, Smýkal P, Soukup A. (2018) The role of the testa during the establishment of physical dormancy in the pea seed. Annals of Botany 123(5), 815–829. doi: 10.1093/aob/mcy213 (IF2018=3.454) • Trněný O, Brus J, Hradilová I, Rathore A, …. Richards C, Smýkal P. (2018) Molecular evidence for two domestication events in the pea crop. Genes 9, 535; doi:10.3390/genes9110535 (IF2018=3.6) • Smýkal P., Hradilová I., O. Trněný, J. et al. (2017) Genomic diversity and macroecology of the crop wild relatives of domesticated pea. Scientific Reports 7: 17384 | DOI:10.1038/s41598-017-17623-4 (IF2018= 4.011) • Hradilová I, Trněný O, Válková M, … Smýkal P (2017) A combined comparative transcriptomic, metabolomic, and anatomical analyses of two key domestication traits: Pod dehiscence and seed dormancy in pea (Pisum sp.). Front. Plant Sci. 8: 542e (IF2018= 4.106)

Version as of 1 February, 2019 • Smýkal P., Coyne C. and 14 co-authors (2015) Legume crops phylogeny and genetic diversity for science and breeding. Critic. Rev. Plant Sci. 34: 43-104 (IF2018= 4.189)

Grant projects 2019-2021: GAČR, Grant Agency of Czech Republic nr. 19-07155S. Identification of regulatory networks controlling pea seed coat development using combination of RNA sequencing, protein and metabolites analysis. (investigator) 2016-2018: GAČR, Grant Agency of Czech Republic nr. 16-21053S, Využití přístupů ekologické genomiky k poznání adaptivního významu dormance semen u bobovitých rostlin. (investigator) 2014-2017: FP7 LEGATO (LEGumes for the Agriculture of Tomorrow) (investigator for UPOL, WP1 task 1.3 leader) 2014-2016: GAČR, Grant Agency of Czech Republic nr.14-11782S, Dormance semen a pukavost lusků jako klíčové domestikační znaky luskovin. (investigator) Editor-member of editorial board: Frontiers in Plant Sciences (IF 4.106), Associate Editor BMC Plant Biology (IF 3.672), Associate Editor Biologia Plantarum (IF 1.424), Associate Editor Agronomy (IF 2.259), Editorial board member and Guest Editor International Journal of Molecular Sciences (IF 4.183), Guest Editor Czech Journal of Genetics and Plant Breeding (IF 0.467), Editorial board member Legumes Perspectives, Editorial board member Legumes Science (Wiley), Editorial board member Field and Vegetable Crops Research (ISSN 1821-3944), Editorial board member Membership in professional organizations: European Federation of Plant Physiologist (FESPP) Czech Society of Experimental Plant Biology (ČSEBR) International Legume Society Member of the Council of Genetic Resources of the Czech Republic, National Program of Conservation and Utilization of Plant Genetic Resources and Agro-Biodiversity (NP GZR) Member of the Field Verification and Evaluation Panel (OVHP) for the EP - Agricultural Sciences, Support Office of the Research, Development and Innovation Council, Office of the Government of the Czech Republic

Activities Abroad 1992-93 6 months, TEMPUS Fellowship, University of Cordoba, Spain 1992 3 months, TEMPUS, Biogema / Nickersons Ltd., Cambridge Science Park, UK 2001-2003 Institute for Biology III, Albrecht Ludwig University of Freiburg, Germany, researcher 1999-2001 Institute of Plant Science, Plant Genetics, ETH Zurich, Switzerland, researcher 2005 1 month, STSM COST522 Fellowship, University of Dundee, UK 2006 6 weeks, OECD Fellowship, University of Helsinki, Finland 2008 1 month, Royal Society of Edinburgh Fellowship, University of Dundee, UK 2012 1 month, Royal Society of Edinburgh Fellowship, Royal Botanical Garden Edinburgh, UK 2018/19 6 months, Fulbright Scholar Fellowship, University of Vermont, USA

Signature Date

Version as of 1 February, 2019 C-I – Staffing Arrangements University Palacký University Olomouc University Facility Faculty of Science Name of Study Program Plant Biology Name and Surname Dana Šafářová Titles Mgr., Ph.D. Year of Birth 1969 Type of pp. Extent 40 Until 06/22 Involvement with the University Type of Involvement with the University Facility pp. Extent 40 Until 06/22 Conducting the Study Program Other Simultaneous Commitments with Other Universities as a Type of Extent Member of Academic Staff Employment Relationship — Courses in the Particular Study Program and the Manner of Involvement in Their Lecturing, or Other Involvement in the Operation of the Program KBB/ CONGE Conservation Genetics – garant, lecturer (50 %) Information on University Education Mgr.: Faculty of Science, UP Olomouc, Systematic Biology and Ecology, 1993 Ph.D.: Faculty of Science, UP Olomouc, Botany, 2004 Professional History Since University Graduation 2009 – now: Secretary of the Department for Educational Affairs, Department of Cell Biology and Genetics, Faculty of Science, UP Olomouc 1999 – now: assistant professor, Department of Cell Biology and Genetics, Faculty of Science, UP Olomouc 2006 – August 2008: Deputy Head of the Department for Study Affairs 2005 – 2008: Secretary of the Department, Department of Cell Biology and Genetics, Faculty of Science, UP Olomouc 1997 – 1999: asisstant, Department of Cell Biology and Genetics, Faculty of Science, UP Olomouc 1993 – 1996: researcher, Department of Cell Biology and Genetics, Faculty of Science, UP Olomouc 1993: researcher, fa Mippo, Dvůr Králové nad Labem Experience Regarding Supervision of Qualification and Rigorous Theses 23 bachelor theses, 7 master theses

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Massart S. et al. (2019) Virus Detection by High-Throughput Sequencing of Small RNAs: Large-Scale Performance Testing of Sequence Analysis Strategies. Phytopathology 109(3):488-497. Šafářová D. et al. (2018) Molecular characterization of a novel Aureusvirus infecting elderberry (Sambucus nigra L.). PLoS One 13(8):e0200506. Šafářová D, Candresse T, Navrátil M. (2018) Complete genome sequence of a novel bromovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic. Arch Virol. 163(2):567-570. Cerna H et al. (2017) Proteomics offers insight to the mechanism behind Pisum sativum L. response to Pea seed-borne mosaic virus (PSbMV). J Proteomics. 5;153:78-88. Šafářová, D., Zemánek, T., Válová, P., Navrátil, M. (2016) ‘Candidatus phytoplasma cirsii’, a novel taxon from creeping thistle [Cirsium arvense (L.) Scop.] IJSEM 66 (4):1745-1753. Activities Abroad

Signature Date 23.1.2020

Information on University Education 2005 – SPU Nitra (SK) – Landscape Engineering – professor 2004 – Accreditation MZe - accredited consultant 2003 – FF UP Olomouc – pedagogy 2003 – Swedish University of Agriculture in Uppsala –- Dr. 1996 – Palacký University Olomouc – Ecology – doc. 1994 – Ministry of the Environment - Examination to assess the impact of buildings and activities on the environment (EIA) 1992 – MZLU Brno - CSc. 1987 – Faculty of Science, UP Olomouc - 2 years postgradual study, Ecology 1983 – Agricultural University Brno - Ing.

Professional History Since University Graduation 1990-now – Department of Ecology and Environmental Sciences, Faculty of Science, UP Olomouc 1994-2001– vice-dean of the faculty, 2001-2010 – Head of Department of Ecology and Environmental Sciences since 2015 – Chairman of the Scientific and Educational Council of Biology and Ecology 1983-1990 – Agroplan Praha – projectant - landscape and land use optimization

Experience Regarding Supervision of Qualification and Rigorous Theses Bachelor, master and Ph.D. theses - membership in doctoral program boards (PřF UP Olomouc, PřF OSU Ostrava, MENDELU Lednice, PřF UK Bratislava, PřF UKF Nitra), - membership in the scientific boards of 4 research institutes, - membership in habilitation committees PřF UP, PřF UK Bratislava, ČZU Praha, MENDELU Brno.

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Ecology 1996 UPOL WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 350 cca Acquisition the Procedure 400 Landscape Engineering 2005 SPU Nitra Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Bednar, M., Šarapatka, B. (2018): Relationships between physical-geographical factors and soil degradation on agricultural land, Environmental Research 164: 660-668.

Version as of 1 February, 2019 Sarapatka, B., Cap, L., Bila, P. (2018): The varying effect of water erosion on chemical and biochemical soil properties in different parts of Chernozem slopes. Geoderma 314: 20-26. Bilosova, H., Sarapatka, B., Stybnarova, M., Micova, P., Svozilova, M. (2017): Nitrogen leaching from grassland ecosystems managed with organic fertilizers at different stocking rates. Archives of Agronomy and Soil Science 63/11: 1535-1545. Šarapatka, B., Alvarado-Solano, D.P., Čižmár, D. (2019): Can glomalin content be used as an indicator for erosion damage to soil and related changes in organic matter characteristics and nutrients? Catena 181: 104078. Chmelík, V., Šarapatka, B., Machač, O., Mikula, J., Laška, V., Tuf, I.H. (2019): The effect of farming system and management practices on surface-dwelling soil macrofauna. Zemdirbyste - Agriculture 106: 291-296.

Activities Abroad Swedish University of Agricultural Sciences Uppsala, Wageningen University, The Netherlands, University of Nebraska, Lincoln, USA, Bioforschung Austria, ZALF Müncheberg, Germany, Pavlodar University and others. - Active participation in a number of international conferences on soil quality and protection, landscape planning and agroecology.

Signature Date

Information on University Education 1982 – MVDr. VŠV Brno; 1991 – CSc. Zoology, ÚSEB ČSAV Brno; 1999 – doc. Ecology, Faculty of Science, UP Olomouc; 2004 – prof. Ecology, Faculty of Science, UP Olomouc

Professional History Since University Graduation 1983-1987 – assistant professor, ÚVO ČSAV Brno 1987-1992 – specialist I, ÚSEB ČSAV Brno 1992 – researcher, ÚBO AVČR Brno 1997-1999 – assistant professor, Faculty of Science, UP Olomouc 1999-2004 – associate professor, Department of Ecology and Environmental Sciences, Faculty of Science, UP Olomouc 2004 – professor, Department of Ecology and Environmental Sciences, Faculty of Science, UP Olomouc

Experience Regarding Supervision of Qualification and Rigorous Theses 20 bachelor theses, 30 master theses, 11 Ph.D. theses

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Ecology 1999 UPOL WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 1248 1317 Acquisition the Procedure Ecology 2004 UPOL Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Monographs: Tkadlec E, Losík J. 2013. Základní metody populační ekologie. Olomouc: Palacký University Olomouc. 89 s. Tkadlec E. 2013. Populační ekologie: struktura, růst a dynamika populací. 2. vydání. Olomouc: Palacký University Olomouc. 414 s. Tkadlec E. 2011. Strategie a metody vědecké práce v přírodních vědách: filozofické názory a komunikační dovednosti. Olomouc: Palacký University Olomouc. 195 s. Publications with IF: 61, h-index: 19 Tkadlec E, Václavík T, Široký P. 2019. Rodent host abundance and climate variability as predictors of tickborne disease risk 1 year in advance. Emerging Infectious Diseases 25(9): 1738–1741. Tkadlec E, Václavík T, Kubelová M, Široký P. 2018. Negative spatial covariation in abundance of two European ticks: diverging niche preferences or biotic interaction? Ecological Entomology. Petrová I, Petriláková M, Losík J, Gouveia A, Damugi IED, Tkadlec E. 2018. Density-related pattern of variation in body growth, body size and annual productivity in the common hamster. Mammalian Biology 91: 34–40.

Version as of 1 February, 2019 Gouveia Ana R, Bjørnstad Ottar N, Tkadlec Emil. 2016. Dissecting geographic variation in population synchrony using the common vole in central Europe as a test bed. Ecology and Evolution 6(1): 212–218.

Activities Abroad

Signature Date 21. 1. 2020

Information on University Education Mgr.: Faculty of Science, UP Olomouc, Systematic Biology and Ecology, 1982-1987 RNDr.: Faculty of Science, UP Olomouc, Systematic Biology, 1987 Ph.D..: Faculty of Science, UP Olomouc, Botany, 2000 doc.: Faculty of Science, UP Olomouc, Botany, 2009

Professional History Since University Graduation 1987-2009: assistant professor, Department of Botany, Faculty of Science, UP Olomouc 2009-now: associate professor, Department of Botany, Faculty of Science, UP Olomouc

Experience Regarding Supervision of Qualification and Rigorous Theses 6 bachelor theses, 31 master theses, 3 Ph.D. theses

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Botany 2009 UP Olomouc WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 334 258 110 Acquisition the Procedure

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Király G., Sochor M. & Trávníček B. (2017): Reopening an old chapter: a revised taxonomic and evolutionary koncept of the Rubus montanus group. – Preslia 89: 309–331. Trávníček B., Lepší M., Lepší P. & Žíla V. (2018): Taxonomy of Rubus ser. Radula in the Czech Republic. – Preslia 90: 387–424. Kaplan Z., Danihelka J., Chrtek J. Jr., Prančl J., Ducháček M., Ekrt L., Kirschner J., Brabec J., Zázvorka J., Trávníček B., Dřevojan P., Šumberová K., Kocián P., Wild J. & Petřík P. (2018): Distributions of vascular plants in the Czech Republic. Part 7. – Preslia 90: 425–531. Kirschner J., Štěpánek J., Trávníček B. & Vašut R. J. (2019): 103. Taraxacum F. H. Wigg. - pampeliška (smetánka). – In: in Kaplan Z. ed., Klíč ke květeně České republiky. Ed. 2. - Academia, Praha (p. 1058-1081). Popelka O., Trávníček B., Šiková P., Jandová M. & Duchoslav M. (2019): Natural hybridization between diploid Ficaria calthifolia and tetraploid Ficaria verna subsp. verna in central Europe: evidence from morphology, ecology and life- history trans. – Preslia 91: 179–212. Sochor M., Trávníček B. & Király G. (2019): Ploidy level variation in the genus Rubus in the Pannonian Basin and the northern Balkans, and evolutionary implications. – Pl. Syst. Evol. 305: 611–626.

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Version as of 1 February, 2019 C-I – Staffing Arrangements University Palacký University Olomouc University Facility Faculty of Science Name of Study Program Plant Biology Name and Surname Ivan Hadrián Tuf Titles doc. RNDr. Mgr., Ph.D. Year of Birth 1974 Type of pp. Extent 40 Until N Involvement with the University Type of Involvement with the University Facility pp. Extent 40 Until N Conducting the Study Program Other Simultaneous Commitments with Other Universities as a Type of Extent Member of Academic Staff Employment Relationship — Courses in the Particular Study Program and the Manner of Involvement in Their Lecturing, or Other Involvement in the Operation of the Program EKO/PEEPE Soil Science and Soil Ecology – lecturer, tutorials leading, 30 % Information on University Education 1997: Mgr. – Systematic Biology nad Ecology, Faculty of Science, UP Olomouc 2002: Ph.D. – Ecology and environmental protection, Faculty of Science, UP Olomouc 2005: Mgr. – Psychology, Faculty of Arts, UP Olomouc 2008: RNDr. – Teaching of biology in environmental protection for secondary schools, Faculty of Science, UP Olomouc 2018: doc. – Ecology, Faculty of Science, UP Olomouc Professional History Since University Graduation 2002-07: researcher, Department of Ecology and Environmental Science, Faculty of Science, UP Olomouc 2007-18: assistant professor, Department of Ecology and Environmental Science, Faculty of Science, UP Olomouc 2018-now: associate professor, Department of Ecology and Environmental Science, Faculty of Science, UP Olomouc Experience Regarding Supervision of Qualification and Rigorous Theses 82 theses totally

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Ecology 2018 UPOL WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 349 cca >500 Acquisition the Procedure 400

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Šimek, M., Baldrian, P., Bryndová, M., Devetter, M., Elhottová, D., Háněl, L., Chroňáková, A., Kopecký, J., Koubová, A., Kováč, Ľ., Kyselková, M., Lukešová, A., Marečková, M., Pižl, V., Schlaghamerský, J., Starý, J., Tajovský, K., Tkadlec, E., Tuf, I.H., Tůma, J. (2019): Půdní organismy. In: Šimek, M. a kol.: Živá půda: biologie, ekologie, využívání a degradace půdy. Academia, Praha: 29-220. (ISBN: 978-80-200-2976-8) Vašutová, M., Mlezsko, P., López-García, A., Maček, I., Boros, G., Ševčík, J., Fujii, S., Hackenberger, D., Tuf, I.H., Hornung, E., Páll-Gergely, B., Kjøller, R. (2019): Taxi drivers: the role of animals in transporting mycorrhizal fungi. Mycorrhiza, 29: 413–434. Dányi, L., Balázs, G., Tuf, I.H. (2019): Taxonomic status and behavioural documentation of the troglobiont Lithobius matulici (Myriapoda, Chilopoda) from the Dinaric Alps: Are there semiaquatic centipedes in caves? ZooKeys, 848: 1–20. Tuf, I.H., Mock, A., Dvořák, L. (2018): An exotic species spreads through Europe: Tygarrup javanicus (Chilopoda: Geophilomorpha: Mecistocephalidae) is reported from Slovakia and the Czech Republic. Journal of Asia-Pacific Entomology, 21: 560-562. Nefediev, P.S., Farzalieva, G.Sh., Tuf, I.H., Nedoev, Kh.Kh., Niyazov, S.T. (2018): Millipede and centipede assemblages on the northern and southern slopes of the lowland Altais, southwestern Siberia, Russia (Diplopoda, Chilopoda). ZooKeys, 741: 219–254.

Version as of 1 February, 2019 Activities Abroad totally 1,5 year, e.g..: 2013-18 Russia, Московский государственный университет имени Ломоносова & Алтайский государственный университет – 10 weeks; 2014 Lituania, Gamtos tyrimų centro – 4 weeks; 2015 Papua Nová Guinea, The New Guinea Binatang Research Center – 4 weeks; 2016 Mongolia, Монгол Улсын Их Сургууль – 4 weeks; 2007-19 Hungary, Magyar Természettudományi Múzeum & Szent István Egyetem – totally 43 weeks

Signature Date

Information on University Education Mgr. – Systematic Biology and Ecology, Botany, Faculty of Science, UP Olomouc, 2001 RNDr. – Botany, Faculty of Science, UP Olomouc Ph.D. – Botany, Faculty of Science, UP Olomouc, 2007

Professional History Since University Graduation 2001-2003; 2006-2007 – Ph.D. study – Department of Botany, Faculty of Science, UP Olomouc 2002-2006 – Ph.D. study – Laboratory of Genetics, Wageningen University, the Netherlands a Centre for Terrestrial Ecology, Royal Dutch Academy of Sciences (CTE-NIOO-KNAW), Heteren, the Netherlands (2002-2005). 2007-now – researcher, since 2011 assistant professor, Department of Botany, Faculty of Science, UP Olomouc 2018-now – assistant professor, Department of Biology, PdF UP (0,3)

Experience Regarding Supervision of Qualification and Rigorous Theses Bachelor theses 12 (+7), master theses 7 (+1), rigorose thesis 1, Ph.D. theses 3 (+1)

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals - Sochor M., Vašut R. J., Sharbel T. F., Trávníček B. (2015): How just a few makes a lot: Speciation via reticulation and apomixis on example of European brambles (Rubus subgen. Rubus, Rosaceae). – Molecular Phylogenetics and Evolution 89: 13-27. DOI: 10.1016/j.ympev.2015.04.007 (~20 %) - Majeský Ľ., Vašut R. J. & Kitner M. (2015): Genotypic diversity of apomictic microspecies of the Taraxacum scanicum group (Taraxacum sect. Erythrosperma). – Plant Systematics and Evolution 301(8): 2105-2124, DOI: 10.1007/s00606- 015-1218-x. (~35 %) - Šarhanová P., Sharbel T. F., Sochor M., Vašut R. J., Dančák M. & Trávníček B. (2017): Hybridization drives evolution of apomicts in Rubus subgenus Rubus - evidence from microsatellite markers. – Annals of Botany published online. DOI: https://doi.org/10.1093/aob/mcx033. (~10 %) - Majeský Ľ., Krahulec F. & Vašut R. J. (2017): Where to place apomictic taxa in taxonomic hierarchy of apomictic genera? Let's take a look on apomictic dandelions. Taxon 66: 1017-1040. DOI: https://doi.org/10.12705/665.3. (~40 %) - Vašut R. J. (2019): 99. Salicaceae Mirb. – vrbovité. – In: Kaplan Z. & Danihelka J. [eds.], Klíč ke Květeně České republiky, pp. 564-580. ISBN 978-80-200-2660-6. (100 %).

Version as of 1 February, 2019 Activities Abroad —

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Courses in the Particular Study Program and the Manner of Involvement in Their Lecturing, or Other Involvement in the Operation of the Program BOT/KVAPE Systematic Anatomy and Morphology of Vascular Plants – garant, lecturer, tutorials leading, 100 %

Information on University Education Dr.: UP Olomouc, Botany, 1998 Ing.: VŠZ Brno, Agronomical Faculty, Zootechnics, 1991 PaedDr.: UP Olomouc, Didactics of biology, 1985 graduate: UP Olomouc, Teaching of biology and physical education for secondary schools, 1983

Professional History Since University Graduation 1990 – now: assistant professor, Department of Botany, Faculty of Science, UP Olomouc 1983 – 1990: secondary school teacher, Secondary technical school

Experience Regarding Supervision of Qualification and Rigorous Theses 28 bachelor theses, 39 master theses

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Vinter, V., Hašler, P. (2017): Praktikum z anatomie vyšších rostlin. – Vydavatelství UP v Olomouci. Vinter, V., Králíček, I. (2017): Začínající učitel biologie. - Vydavatelství UP v Olomouci. Fellner, M., Vinter, V. (2015): Fyziologie rostlin. - Vydavatelství UP v Olomouci. Vinter, V., Macháčková Petra. (2013): Přehled morfologie cévnatých rostlin. - Vydavatelství UP v Olomouci. Kubienová, L., Vinter, V. (2013): Rostliny, léčivé látky, drogy.- Vydavatelství UP v Olomouci. Vinter, V., Bazgier, V. (2013): Srovnání výsledků učení s využitím e-learningu a tištěného textu na příkladu anatomie rostlin. In. Sborník materiálů z vědecké konference s mezinárodní účastí Profesní příprava učitelů přírodovědných oborů, UP v Olomouci. Activities Abroad

Signature Date 27.1. 2020

Garant: DSP Zoology, Faculty of Science, UP Olomouc, since 2019

Experience Regarding Supervision of Qualification and Rigorous Theses Bachelor theses 9, master theses 12, Ph.D. theses 4

Field of Habilitation Procedure Year of Degree University Conducting Impact of Acquisition the Procedure Publications Zoology 2003 UP Olomouc WOS Scopus Others Field of Nominating Procedure Year of Degree University Conducting 871 1502 Acquisition the Procedure (core) Scholar

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Jelínek, V., Šulc, M., Weidinger, K., & Honza, M. 2019. Parent-absent begging and the risk of nest predation. Journal of Ornithology 160: 127-136.[10 %] Bulla, M., Valcu, M.,…. Weidinger, K., ... & Spiegel, C. S. 2016. Unexpected diversity in socially synchronized rhythms of shorebirds. Nature 540(7631): 109. [1 %] Jelínek, V., Karasová, T., Weidinger, K., Procházka, P., & Honza, M. 2016. Do common cuckoo chicks suffer nest predation more than host nestlings? Behavioral Ecology and Sociobiology 70: 1975-1987. [10 %] Mainwaring, M.C., Reynolds, S.J. & Weidinger, K. 2015. The influence of predation on the location and design of nests. pp. 50-64. In: Nests, Eggs, and Incubation, New ideas about Avian Reproduction. Edited by D.C.Deeming and S.J. Reynolds. Oxford University Press. [50 %] Koleček, J., Reif, J. & Weidinger, K. 2015. The abundance of a farmland specialist bird, the skylark, in three European regions with contrasting agricultural management. Agriculture, Ecosystems and Environment 212: 30-37. [30 %]

Activities Abroad Antarctica, 3 research expeditions (total 23 months) Netherlands, Institute for Forestry and Nature Research, Den Burg, study stay (3 months) Sweden, Abisko Scientific Research Station, research stay (1 month) Signature Date 24.1.2020

Information on University Education 1998: Botany, Faculty of Science, UP Olomouc, Ph.D. 1994: Faculty of Science, UP Olomouc, Teaching of biology and chemistry for secondary schools, Mgr.

Professional History Since University Graduation 1998 – now: assistant professor, Department of Ecology and Environmental Science, Faculty of Science, UP Olomouc Experience Regarding Supervision of Qualification and Rigorous Theses 27 bachelor theses, 23 master theses

Overview of the Most Important Publication and Other Creative Activities Related to the Respective Course or Other Professional Activities in the Case of Practising Professionals Zeidler M., Hertlová B., Banaš M., Zahradník D. (2018): Vegetation shift after a clear-cut of non-native dwarf pine (Pinus mugo Turra). Biologia, https://doi.org/10.2478/s11756-017-0002-5. Zeidler M., Duchoslav M., Banaš M. (2016): How alpine heathlands response to the snow cover change on the ski slope? Long-lasting ski slope impact case study from the Hrubý Jeseník Mts (Central Europe). Acta Societatis Botanicorum Poloniae 85(2):3504. http://dx.doi.org/10.5586/asbp.3504 Hertlová B., Popelka O., Zeidler M., Banaš M. (2016): Alpine plant communities responses to simulated mechanical distrubances of tourism, case study from the High Sudetes Mts. Journal of Landscape Management 7(2): 16 – 21. Zeidler M., Duchoslav M., Banaš M. (2014): Effect of altered snow conditions on decomposition in three subalpine plant communities. - Central European Journal of Biology 9(8): 811–822; DOI: 10.2478/s11535-014-0312-3

Activities Abroad

Signature Date 22.2.2020

Version as of 1 February, 2019 C-II – Related Creative, Scientific and Artistic Activities Overview of Involvement in Grants and Projects in the Case of an Academically-Oriented Bachelor Study Program and Master and Doctoral Study Programs Investigator/ Names of Grants and Projects Acquired for Source Period Co-Investigator Scientific, Research, Artistic and Other Creative Activities in the Particular Area of Education Doc. Ing. P. Smýkal, Identification of regulatory networks controlling pea GAČR 2019-2021 PhD. /Investigator/ seed coat development using combination of RNA sequencing, protein and metabolites analysis. Nr. 19-07155S doc. Ing. P. Smýkal, nr. 16-21053S, Využití přístupů ekologické GAČR 2016-2018 Ph.D. /Investigator/ genomiky k poznání adaptivního významu dormance semen u bobovitých rostlin. doc. Ing. P. Smýkal, FP7 LEGATO (LEGumes for the Agriculture of 2014-2017 Ph.D. /Investigator/ Tomorrow) doc. Ing. P. Smýkal, nr.14-11782S, Dormance semen a pukavost lusků GAČR 2014-2016 Ph.D. /Investigator/ jako klíčové domestikační znaky luskovin. Doc. RNDr. Vladan QK1910103 České bylinky pro nové otraviny NAZV 2019-2023 Ondřej, PhD. podporující zdraví populace, /Investigator/ doc. RNDr. Vladan CZ.1.05/4.1.00/11.0245 Centrum biologických OP VaVpI 2013-2015 Ondřej, Ph.D. oborů PřF UP Olomouc-Holice /Investigator/ doc. RNDr. Vladan CZ.02.2.67/0.0/0.0/16_016/0002293 Dobudování a OP VVV 2017-2019 Ondřej, Ph.D. modernizace infrastruktury pro praktickou výuku na /Investigator/ PřF UP, Olomouc - Holice Doc. RNDr. Vladan CZ.02.2.69/0.0/0.0/16_015/0002337 Univerzita OP VVV 2017-2020 Ondřej, Ph.D., Doc. Palackého jako komplexní vzdělávací instituce RNDr. Barbora Mieslerová, Ph.D., Paedr. Ing. Vladimír Vinter, Ph.D. /Co- Investigators/ prof. Ing. Aleš Lebeda, CZ.1.07/2.2.00/15.0316 Zvyšování OP VK 2011-2013 DrSc. /Investigator/ konkurenceschopnosti studentů oboru botanika a učitelství biologie prof. Dr. Ing. Bořivoj Degradace půdy a její vliv na komplex půdních QJ1230066 2012-2016 Šarapatka, CSc. / vlastností včetně návrhu nápravných opatření k Investigator/ obnově agroekologických funkcí půdy prof. Dr. Ing. Bořivoj Hodnocení území na bývalých rybničních NAZV 2012-2015 Šarapatka, CSc. / soustavách (vodních plochách) s cílem posílení Investigator / udržitelného hospodaření s vodními a půdními zdroji v ČR prof. Dr. Ing. Bořivoj OPPS ČR – PL - CZ.3.22/1.2.00/12.03445 Rizika a MMR 2013-2015 Šarapatka, CSc. / přínosy aplikace exogenní organické hmoty na půdu Investigator / prof. Dr. Ing. Bořivoj Ochrana půdy formou optimalizace prostorových a QJ1630422 2016-2018 Šarapatka, CSc. / funkčních parametrů prvků krajinné struktury v Investigator / pozemkových úpravách - (2016 - 2018). prof. Dr. Ing. Bořivoj Retenční schopnost půdy a krajiny a možnosti jejího QK1720303 2017-2019 Šarapatka, CSc. / zvyšování v podmínkách klimatické změny Investigator / prof. Ing. Aleš Lebeda, 7503719 Harmonization of resistance test to European Union 2012 – 2015 DrSc. /Investigator/, diseases for DUS testing - 2 (Harmores 2) - CPVO doc. Ing. Eva Křístková, Ph.D. /Co- Investigator/

Version as of 1 February, 2019 prof. Ing. Aleš Lebeda, Variabilita složek a interakcí v rostlinném Výzkumný záměr 2005-2011 DrSc. /Investigator/, patosystému a vliv faktorů prostředí na jejich projev MSM6198959215 prof. RNDr. Milan Navrátil, CSc., doc. Ing. Eva Křístková, Ph.D., doc. RNDr. Barbora Mieslerová, Ph.D., doc. RNDr. Michaela Sedlářová, Ph.D. /Co- Investigator/, prof. Ing. Aleš Lebeda, Leafy vegetables germplasm, stimulating use European 2006-2010 DrSc. /Investigator/, Comission AGRI- doc. Ing. Eva 2006-0262 Křístková, Ph.D. /Co- Investigator/ prof. Ing. Aleš Lebeda, Národní program konzervace a využívání MZe 1998-now DrSc., prof. RNDr. genetických zdrojů mikroorganismů a drobných Milan Navrátil, CSc, živočichů hospodářského významu doc. RNDr. P. Hašler, PhD. , doc. RNDr. M. Sedlářová, PhD. /Co- Investigator/ doc. RNDr. M. CZ.1.07/2.2.00/28.0171 - FytoChem - mezioborová MŠMT 2012-2015 Sedlářová, Ph.D. integrace výuky zaměřená na rostlinnou biochemii a /Investigator/, prof. fytopatologii Ing. Aleš Lebeda, DrSc., doc. RNDr. Barbora Mieslerová, Ph.D. /Co- Investigators/ RNDr. Radim Jan Evoluční mechanismy v obligátně apomiktickém GA ČR 2009-2011 Vašut, Ph.D. rodu Taraxacum. GAČR 206/09/P356 /Investigator/ RNDr. Radim Jan Portál České Flóry – edukační moduly pro výuku OP VK 2010-2013 Vašut, Ph.D. botaniky. OPVK (ESF) CZ.1.07/2.2.00/15.0269 /Investigator/ RNDr. Radim Jan Dendrologie: interaktivní fotografický atlas dřevin a MŠMT 2010 Vašut, Ph.D. lesních společenstev. FRVŠ 1871/2010 /Investigator/ Overview of Involvement in Projects and Other Activities in Collaboration with the Application Sector in the Case of Professionally-Oriented Bachelor Study Program and the Master Study Program Application Sector Name or Description of the Project Implemented Period Workplace in Collaboration with the Application Sector — Professional Activities Related to the University’s Creative, Scientific and Artistic Activities Connected to the Study Program

Organisation of international conferencies, e.g. Eucarpia Leafy Vegetables (2019, 1999), Wild Plant Pathosystems (2013), The Downy Mildews (2007).

The creative and scientific work of academics involved in the study program Plant Biology is related to taxonomy (algae, fungi, vascular plants), plant ecology, phytopathology, biotechnology and the use of molecular techniques. All employees regularly publish the results of their work in professional journals and are involved as investigators or co-investigators in research projects.

Version as of 1 February, 2019 Information About Collaboration with the Application Sector Connected to the Study Program

Cooperation with the Ministry of Agriculture, the Ministry of the Environment, The Nature Conservation Agency of the Czech Republic, the state administration, etc.

Version as of 1 February, 2019 C-III – Provision of Information In the Study Program Name and Brief Description of the Study Information System

Name: IS/STAG (https://stag.upol.cz)

Study agenda IS/STAG is a part of the Palacký University Olomouc information system. It is a complex system for managing study administration from the moment of submitting an application to issuing a diploma and a link to other information systems.

Access to Literature

Study literature is available in the university library in the Armoury building and in the Library of Faculty of Science. The faculty library is housed in two buildings: the stock at the address 17. listopadu 12 specializes on chemistry, geology, geography, geoinformatics, development studies, physics, optics, mathematics and informatics; the branch at the address Šlechtitelů 27 focuses on botany, biochemistry, cell biology and ecology. Students also have electronic information resources at their disposal (https://ezdroje.upol.cz/index.php?lang=en).

Overview of Accessible Databases

Access to electronic journals and books: https://ezdroje.upol.cz/ecasopisy/index.php?lang=en

Name and Brief Description of the Anti-Plagiarism System Used

Name: Theses.cz (http://theses.cz/)

The Theses.cz system is developed and administered by Masaryk University. The system represents a national registry of theses and allows to upload student theses and search them for instances of plagiarism. The general public can access individual registry records of theses, or even their full texts (depending on the school).

Version as of 1 February, 2019 C-IV – Study Program Material Arrangements Study Program Operation Venue Šlechtitelů 27, Olomouc - Holice Capacity of Lecturing Premises for Theoretical Lecturing

SE E1 42 Biological Center SE E2 24 Biological Center SE PC 20 Department of Botany SE 501 96 Department of Botany (now under reconstruction) SE 502 36 Department of Botany (now under reconstruction) SE 504 24 Department of Botany SE 507 40 Faculty of Sciences (now under reconstruction) SE 622 15 Department of Ecology and Environmental Science

Capacity of Rented Premises — Rental Contract Period — Capacity and Description of Specialized Classroom

SE MKL 15 Department of Botany (microbiological laboratory) SE 506 15 Department of Botany (microscopical laboratory) SE HER 15 Department of Botany (herbarium) SE SKL 6 Department of Botany (Glasshouse laboratory)

The Department of Botany also has laboratories (biotechnological, molecular-biological, cytological, phytopathological), experimental and collection greenhouses. The equipment of the department fully corresponds to the broadly conceived scientific and research orientation of the department and also covers the teaching needs. In addition to common devices, the department has for example: colony counter for microbiology water filtration equipment with EZ-Stream™ Pump thermocyclers (Eppendorf ProS, MJ Research PTC-200, Bioer TC-Xp, THERMAL) lightcycler nano instrument spectrophotometrs NanoDrop ND-1000 and Eppendorf BioPhotometer homogenisators FastPrep24, Retzch MM301 Mixer Mill deep freezing boxes -80°C (Angelantoni, Sanyo) centrifuges (EPPENDORF Eppendorf 5415D, 5804R, ROTOFIX) autoclaves Systec DX-23 documentation system FireReader V4 vacuum concentrator Labconco digestory Merci flowboxes (GELAIRE, STERIL, TELSTAR) desktop RPM equipment for performing basic (karyology) and advanced cytogenetic techniques (e.g. GISH, FISH) flow cytometers (PARTEC, BD Accuri), basic equipment for field work (GPS, metal detectors, irradiation measuring instruments, ph-meters, sensors / data loggers) microscopes OLYMPUS BX 60 with camera system, OLYMPUS CK 40, fluorescence microscope Olympus BX 60 with CCD camera DP73 WDR, microscope Zeiss AXIOIMAGER D2, AXIOWERT, confocal laser scanning microscope Fluoview 1000, inverted microscope Olympus IX 81 with conphocal unit Fluoview 1000, 4 lasers and CCD camera DP 70

Version as of 1 February, 2019 software Image analysis Imaris x64 7.7.1 scientific software (Statistica 10, NCSS 9, CANOCO 5.0, RAMAS Metopopulation 6.0, NTSYS, etc.) herbarium containing cca 100 000 samples of vascular plants Capacity of Rented Premises — Rental Contract Period — Statement of the Health Authority as of —

Measures and Conditions to Ensure Equitable Approach

Equitable access is stated in Admission Procedure Code of Palacký University Olomouc, Study and Examination Code of Palacký University Olomouc and Code for Conduct of Scholars and Researchers of Palacký University Olomouc.

The UP Support Centre for Students with Special Needs represents a specialized workplace that provides assistance for students with special educational needs or students from socially or ethnically disadvantaged backgrounds. The Centre provides comprehensive professional advisory, technical and therapeutic services for students with special needs at all the faculties of Palacký University.

Version as of 1 February, 2019 C-V – Study Program Financial Arrangements University Education Activities Are Financed yes from the State Budget Evaluation of Assumed Costs and Resources for Operation of the Study Program —

Version as of 1 February, 2019 D-I – Development Plan and Other Study-Program-Related Data Study Program Development Plan and Its Rationale

The study program Plant Biology was created in response to the need for internationalization of studies at the Faculty of Science, UP. It enables high-quality study of the group of disciplines associated under Plant Sciences also to foreign students. The program corresponds to the trends of connection of science and practical application.

The program Plant Biology will be developed in accordance with the basic documents of the Education Policy Strategy of the Czech Republic until 2020, the document Long-term Plan for Education and Development of Educational and Scientific, Research, Development and Innovation, Artistic and Other Creative Activities for Universities 2016-2020, the Long-term Plan of the Palacký University in Olomouc and the Long-term Plan of the Faculty of Science of Palacký University in Olomouc.

Main directions of development of the follow-up master program Plant Biology in several points: • quality preparation of students, validation and extension of their knowledge, development of practical skills of students within plant sciences, increased competence for learning and independent problem solving; • development and innovation of the program in accordance with new scientific knowledge in the given disciplines, continuous implementation of new knowledge; • development of scientific research on biodiversity, biogeography, plant population biology, genetic variability from microscopic cyanobacteria, algae, phytopathogenic fungi to vascular plants, and also the study of plant-pathogen and plant-environment interactions at various levels; • involvement of academic staff of the department in research projects within the internal projects of Palacký University (IGA grant projects) and Faculty of Sciences, UP, in research projects financed from external sources (e.g. GA CR projects and research or educational projects within the ESIF); • systematic support of the qualification growth of the academic staff of the department; • support for the mobility of students and academics, e.g. Erasmus + student and academic placements abroad; • promotion of plant biology to the public, whether in the form of popularizing educational events or lectures and excursions.

Number of Applicants Admitted to the Study Program

Assumed Employability of Graduates

Graduates of the study program Plant Sciences can work in the research institutes (in basic and applied biological research), at universities, botanical gardens, museums, protected areas and national parks administration, in the system of state administration (e.g. The Nature Conservation Agency of the Czech Republic, Central Institute for Supervising and Testing in Agriculture), wastewater treatment plants, companies focused on ecological issues and assessment of the state of the environment, ecological consulting services, etc., where they can used the acquired knowledge. There is also a follow-up Botany doctoral program at the Department of Botany, where students can continue their education.

Version as of 1 February, 2019 E – Self-Evaluation Report Form for the Study Program Approval Application 1. Strengths of the Study Program

The study program Plant Biology is in accordance with valid legislative requirements and internal standards of Palacký University in Olomouc. The objectives of the study and the profile of the graduate comply with the requirements set out in Government Regulation No. 275/2016 Coll. on education in higher education.

The study program Plant Biology focuses on theoretical education completed with practicals, including all basic subjects that will enable students to understand the issue of Plant Sciences in a broader context. The broad scope and comprehensive approach to botanical studies based on a combination of classical and modern methods leads students to a deeper understanding of biology and biodiversity of plants in interaction with the environment.

The study plan of the follow-up master's degree program allows to build on a bachelor's degree of various biological fields, either theoretical (Biology) or practical (Agriculture or Environmental Study), while the individual subjects complement and extend basic theoretical knowledge, but mainly extend practical skills and experience.

Strong experimental and study facilities were built (or reconstructed) thanks to the project OP VaVpI CZ.1.05 / 4.1.00 / 11.0245 (Center of Biological Sciences at Palacký University in Olomouc-Holice) and CZ.02.2.67 / 0.0 / 0.0 / 16_016 / 0002293 (Completion and modernization of infrastructure for practical teaching, Faculty of Science, Palacký University in Olomouc - Holice) thanks to which the laboratories, greenhouses (including the teaching greenhouse) and the herbarium designed for the master study were reconstructed.

2. Weaknesses of the Study Program

There is no exact knowledge about interest of foreign students in the study of science, including the biological ones and also information about the level of education in the field of biology in the countries from which the students come from. The potentially weaker aspect of the follow-up master's program is the smaller number of people interested in studying of Plant Biology.

3. Study Program Staffing Arrangements

The study program Plant Biology is staffed in accordance with the applicable legislative requirements for the guarantee of study programs. Most of the courses focusing on basic and theoretical subjects are guaranteed by academic staff of the Departments of Botany, Zoology, Ecology and Environmental Sciences, Laboratory of Growth Regulators (4 professors, 4 associate professors, 8 Ph.D.).

Guarantor of the study is Doc. RNDr. Barbora Mieslerova, Ph. D., who is an experienced scientific and pedagogical worker, regularly publishes in renowned scientific journals (responses to WOS 414, h-index 15) and in the pedagogical field she was leading about 30 student´s theses (bachelor, master), and is the garant and lecturer of more than 20 courses.

4. Prospects for the Study Program Staffing Arrangements

Most of the academic staff responsible for teaching courses in the study program Plant Biology have an indefinite employment relationship, so it is likely that the teaching will continue to be provided by quality teachers in the coming years. At the Department of Botany, which guarantees the submitted study program, the support of the qualification growth of academic staff of the study program is focused on the following areas:

Version as of 1 February, 2019 • successful completion of doctoral studies in academic staff without an academic degree Ph.D; • systematic support of qualification growth of academic staff of the department, mainly for habilitation or professorship procedure.

5. Prospects for Education and Creative Activities within the Study Program

Educational activity

The concept of the submitted follow-up master's degree program respects the requirements of the Long-term Plan for Education and Development of Educational and Scientific, Research, Development and Innovation, Artistic and Other Creative Activities for Universities 2016-2020, requirements of the Long-term Plan of the Palacký University in Olomouc and the Long-term Plan of the Faculty of Science of Palacký University in Olomouc.

The following areas will be emphasized in the educational activities of the submitted follow-up master's program:

• further education of teaching staff; • continuous implementation of new knowledge from the Plant Science into the subjects taught; • support for the implementation of new teaching methods in the teaching process – e.g. project teaching; • Erasmus + student and academic internships abroad; • organization of popularization science events for the public, e.g. lectures, public excursions.

Creative activity

The creative and scientific work of academic staff involved in the teaching of the study program Plant Biology concerns basic research on biodiversity, biogeography, plant population biology, genetic variability from microscopic cyanobacteria, algae, phytopathogenic fungi to vascular plants, and also study of plant-pathogen and plant-environment interactions on various levels.

The Department of Botany has important and active domestic and international contacts and cooperation with foreign universities and scientific institutions.

The creative activities will focus on the following areas, among others:

• balanced development of existing research areas; and increasing of existing high quality research and publication output; • creation of study supports (atlases, textbooks, study materials) focused on botany; • involvement of academic staff in research projects within the internal projects of Palacký University and in research projects financed from external sources (eg. GA CR projects and research or educational projects within the ESIF); • support for cooperation and research in the field of plant sciences within the Czech Republic and abroad.

Version as of 1 February, 2019

V Olomouci dne 20. května 2020

Prohlášení

V případě udělení oprávnění uskutečňovat navazující magisterský studijní program Plant Biology bude studijní program garantován a studijní předměty garantovány a vyučovány na odpovídající odborné úrovni po celou dobu platnosti akreditace. Pokud dojde k případnému odchodu některých pracovníků, budou nahrazeni pracovníky s kvalifikací odpovídající daným požadavkům.

doc. RNDr. Martin Kubala, Ph.D. děkan Přírodovědecké fakulty Univerzity Palackého v Olomouci

Přírodovědecká fakulta Univerzity Palackého v Olomouci 17. listopadu 1192/12 | 771 46 Olomouc | T: 585 634 060 www.prf.upol.cz