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Persistent and Widespread Occurrence of Bioactive Quinone Pigments During Post-Paleozoic Crinoid Diversification
Persistent and widespread occurrence of bioactive quinone pigments during post-Paleozoic crinoid diversification Klaus Wolkenstein1 Department of Geobiology, Geoscience Centre, University of Göttingen, 37077 Göttingen, Germany Edited by Tomasz K. Baumiller, University of Michigan, Ann Arbor, MI, and accepted by the Editorial Board January 20, 2015 (received for review September 9, 2014) Secondary metabolites often play an important role in the adapta- (14, 15), closely related to the gymnochromes, suggesting that the tion of organisms to their environment. However, little is known fossil pigments may be only slightly changed during diagenesis. about the secondary metabolites of ancient organisms and their Although violet coloration has been occasionally observed in fossil evolutionary history. Chemical analysis of exceptionally well-pre- crinoids (e.g., refs. 16 and 17), until now, only very few chemical served colored fossil crinoids and modern crinoids from the deep sea proofs of quinone pigments have been found for crinoids other than suggests that bioactive polycyclic quinones related to hypericin Liliocrinus (14, 15, 18, 19). Recent measurements suggested the were, and still are, globally widespread in post-Paleozoic crinoids. presence of quinone-like compounds in Paleozoic (Mississippian) The discovery of hypericinoid pigments both in fossil and in present- crinoids (20), but the identity of these compounds has been ques- day representatives of the order Isocrinida indicates that the pig- tioned on methodological grounds (21). ments remained almost unchanged since the Mesozoic, also suggest- To investigate the general occurrence of polycyclic quinone ing that the original color of hypericinoid-containing ancient crinoids pigments in the Crinoidea, the coloration of numerous fossil may have been analogous to that of their modern relatives. -
Monograph38.Pdf
The Lower Triassic System in the Abrek Bay area, South Primorye, Russia Edited by Yasunari Shigeta Yuri D. Zakharov Haruyoshi Maeda Alexander M. Popov National Museum of Nature and Science Tokyo, March 2009 v Contents Contributors .................................................................vi Abstract ....................................................................vii Introduction (Y. Shigeta, Y. D. Zakharov, H. Maeda, A. M. Popov, K. Yokoyama and H. Igo) ...1 Paleogeographical and geological setting (Y. Shigeta, H. Maeda, K. Yokoyama and Y. D. Zakharov) ....................3 Stratigraphy (H. Maeda, Y. Shigeta, Y. Tsujino and T. Kumagae) .........................4 Biostratigraphy Ammonoid succession (Y. Shigeta, H. Maeda and Y. D. Zakharov) ..................24 Conodont succession (H. Igo) ...............................................27 Correlation (Y. Shigeta and H. Igo) ...........................................29 Age distribution of detrital monazites in the sandstone (K. Yokoyama, Y. Shigeta and Y. Tsutsumi) ..............................30 Discussion Age data of monazites (K. Yokoyama, Y. Shigeta and Y. Tsutsumi) ..................34 The position of the Abrek Bay section in the “Ussuri Basin” (Y. Shigeta and H. Maeda) ...36 Ammonoid mode of occurrence (H. Maeda and Y. Shigeta) ........................36 Aspects of ammonoid faunas (Y. Shigeta) ......................................38 Holocrinus species from the early Smithian (T. Oji) ..............................39 Recovery of nautiloids in the Early Triassic (Y. Shigeta) -
Bioluminescence and Fluorescence of Three Sea Pens in the North-West
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.08.416396; this version posted December 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bioluminescence and fluorescence of three sea pens in the north-west Mediterranean sea Warren R Francis* 1, Ana¨ısSire de Vilar 1 1: Dept of Biology, University of Southern Denmark, Odense, Denmark Corresponding author: [email protected] Abstract Bioluminescence of Mediterranean sea pens has been known for a long time, but basic parameters such as the emission spectra are unknown. Here we examined bioluminescence in three species of Pennatulacea, Pennatula rubra, Pteroeides griseum, and Veretillum cynomorium. Following dark adaptation, all three species could easily be stimulated to produce green light. All species were also fluorescent, with bioluminescence being produced at the same sites as the fluorescence. The shape of the fluorescence spectra indicates the presence of a GFP closely associated with light production, as seen in Renilla. Our videos show that light proceeds as waves along the colony from the point of stimulation for all three species, as observed in many other octocorals. Features of their bioluminescence are strongly suggestive of a \burglar alarm" function. Introduction Bioluminescence is the production of light by living organisms, and is extremely common in the marine environment [Haddock et al., 2010, Martini et al., 2019]. Within the phylum Cnidaria, biolumiescence is widely observed among the Medusazoa (true jellyfish and kin), but also among the Octocorallia, and especially the Pennatulacea (sea pens). -
Encrinus Liliiformis (Echinodermata: Crinoidea)
RESEARCH ARTICLE Computational Fluid Dynamics Analysis of the Fossil Crinoid Encrinus liliiformis (Echinodermata: Crinoidea) Janina F. Dynowski1,2, James H. Nebelsick2*, Adrian Klein3, Anita Roth-Nebelsick1 1 Staatliches Museum für Naturkunde Stuttgart, Stuttgart, Germany, 2 Fachbereich Geowissenschaften, Eberhard Karls Universität Tübingen, Tübingen, Germany, 3 Institut für Zoologie, Rheinische Friedrich- Wilhelms-Universität Bonn, Bonn, Germany * [email protected] a11111 Abstract Crinoids, members of the phylum Echinodermata, are passive suspension feeders and catch plankton without producing an active feeding current. Today, the stalked forms are known only from deep water habitats, where flow conditions are rather constant and feeding OPEN ACCESS velocities relatively low. For feeding, they form a characteristic parabolic filtration fan with their arms recurved backwards into the current. The fossil record, in contrast, provides a Citation: Dynowski JF, Nebelsick JH, Klein A, Roth- Nebelsick A (2016) Computational Fluid Dynamics large number of stalked crinoids that lived in shallow water settings, with more rapidly Analysis of the Fossil Crinoid Encrinus liliiformis changing flow velocities and directions compared to the deep sea habitat of extant crinoids. (Echinodermata: Crinoidea). PLoS ONE 11(5): In addition, some of the fossil representatives were possibly not as flexible as today’s cri- e0156408. doi:10.1371/journal.pone.0156408 noids and for those forms alternative feeding positions were assumed. One of these fossil Editor: Stuart Humphries, University of Lincoln, crinoids is Encrinus liliiformis, which lived during the middle Triassic Muschelkalk in Central UNITED KINGDOM Europe. The presented project investigates different feeding postures using Computational Received: August 24, 2015 Fluid Dynamics to analyze flow patterns forming around the crown of E. -
Advances on the Phylogenetic Placement of the Enigmatic Octocoral Dendrobrachia Brook
1 Advances on the phylogenetic placement of the enigmatic octocoral Dendrobrachia Brook 2 1889 3 4 Didier AURELLE1,2,3*, Eric PANTE4, Jean-Baptiste LEDOUX5,6, Stéphane SARTORETTO7 5 6 7 1 Aix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France 8 Mail : [email protected] 9 2 Aix Marseille Univ, Avignon Université, CNRS, IRD, IMBE, Marseille, France 10 3 Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum national d'Histoire 11 naturelle, CNRS, Sorbonne Université, EPHE, 57 rue Cuvier, 75005 Paris, France 12 4 LIENSs Laboratory, UMR 7266 CNRS- La Rochelle Université, 2 rue Olympe de 13 Gouges, 17000 La Rochelle, France 14 Mail : [email protected] 15 5 CIIMAR/CIMAR, Centro Interdisciplinar de Investigação Marinha e Ambiental, 16 Universidade do Porto, Porto, 4050-123, Portugal 17 Mail: [email protected] 18 6 Institut de Ciències del Mar, CSIC, Passeig Marítim de la Barceloneta 37-49, 08003 19 Barcelona, Spain 20 7 IFREMER, Zone Portuaire de Brégaillon CS 20330, 83507 La Seyne-sur-Mer Cedex, 21 France 22 Mail: [email protected] 23 24 * corresponding authors: [email protected] / [email protected] 25 26 Tel: +33 4 86 09 06 22 1 27 28 29 30 Abstract 31 32 The monogeneric family Dendrobrachiidae has been a taxonomic curiosity since its 33 original description in 1889. Using one nuclear (18S) and two mitochondrial (mtMutS and 34 cox1) genes, the phylogenetic placement of Dendrobrachiidae within the Octocorallia was 35 investigated based on recently-collected specimens and museum collections. In particular, 36 the relationship between Dendrobrachia and its suspected close allies from the 37 Chrysogorgiidae and Ifalukellidae was examined. -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
DR EMILY DOLAN [email protected]
CURICULUM VITAE - MAY 2009 DR EMILY DOLAN [email protected] Dr Emily Dolan works as a freelance consultant on projects relating to biodiversity, conservation, and sustainable management of marine ecosystems, in particular those concerning the deep and high seas. Presently a research associate for Dr Sybille van den Hove (Median SCP), Emily Dolan works on the sustainable management work packages for the EU-funded projects, HERMES (Hotspot Ecosystem Research on the Margins of European Seas) and HERMIONE (Hotspot Ecosystem Research and Mans Impact on European Seas). Dr Emily Dolan is currently based in Ghent, Belgium. WORK AND DOCTORATE Jan 2009 - Pres Research Associate Median SCP; FP6 HERMES Project; FP7 HERMIONE Project Research and report on existing governance regimes, principles, policy instruments and ecosystem-based management tools and strategies in relation to the conservation of deep-sea ecosystems and their sustainable uses; Interface between scientists, policy makers and other stakeholders; Organise and attend integrative science-policy meetings and conferences on international and European level (including European Commission); Communicate marine science-policy related issues to the public. 2004 - 2008 PhD National Oceanography Centre (NOCS), UK Institute of Zoology (IOZ), UK Phylogenetics, systematics and biogeography of deep-sea Pennatulacea (Anthozoa: Octocorallia): Evidence from molecules and morphology Supervisors Prof Paul Tyler (NOCS) Dr Alex Rogers (IOZ) Dr David Billett (NOCS) Project: Development and implementation of molecular protocols for the genetic analysis of deep-sea Pennatulacea; Evolutionary history and systematics of the group; Revision of the systematics of the genus Umbellula with descriptions of new species; A study of biogeography, radiation and adaptive morphology. -
The Permian-Triassic Transition in Southern Armenia
IGCP 630: Permian and Triassic integrated Stratigraphy and Climatic, Environmental and Biotic Extremes THE PERMIAN-TRIASSIC TRANSITION IN SOUTHERN ARMENIA October 8th - 14th, 2017 5 th IGCP 630 International conference and field workshop, 8-14 October, 2017 Yerevan, Armenia Workshop schedule: October 8: Arrival in Yerevan, transfer to a hotel. October 9: Conference Day 1, at the Round Hall of Presidium of the Armenian National Academy of Sciences, Yerevan. October 10: Conference Day 2, at the Round Hall of Presidium of the Armenian National Academy of Sciences, Yerevan., and Visit of the Khor Virap monastery and the Matenadaran Scientific Research Institute of Ancient Manuscripts. October 11: Field Trip, Day 1, Yerevan to Ogbin (166 km by bus). Visit to the Ogbin outcrop section. Accommodation in the Hotel Amrots in the city of Vayk. October 12: Field Trip, Day 2, Vayk to Zangakatun, 50km. Visit to the Chanakhchi outcrop section. Return to Hotel Amrots. October 13: Field Trip, Day 3, Vayk to Vedi (86km). Visit to the Vedi outcrop sections and visit of the Noravank monastery. Return to Yerevan (67 km), Conference dinner in evening. October 14: Samples packing for expedition, departure of the participants in the afternoon or in the night. 2 5 th IGCP 630 International conference and field workshop, 8-14 October, 2017 Yerevan, Armenia CONTENTS Workshop schedule ......................................................................................................................... 2 Conference Programm .................................................................................................................... -
Phylogenetics, Systematics and Biogeography of Deep-Sea Pennatulacea (Anthozoa: Octocorallia) Evidence from Molecules and Morphology
University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk UNIVERSITY OF SOUTHAMPTON FACULTY OF ENGINEERING, SCIENCE AND MATHEMATICS School of Ocean and Earth Science Phylogenetics, Systematics and Biogeography of Deep-Sea Pennatulacea (Anthozoa: Octocorallia) Evidence from molecules and morphology Submitted by Emily Dolan Thesis of the degree of Doctor of Philosophy September 2008 Graduate School of the National Oceanography Centre, Southampton This PhD dissertation by Emily Dolan has been produced under the supervision of the following persons Supervisors Prof. Paul Tyler and Dr Alex Rogers Chair of Advisory Panel Dr Martin Sheader Member of Advisory Panel Dr David Billett I hereby declare that no part of this thesis has been submitted for a degree to the University of Southampton, or any other University, at any time previously. The material included is the work of the author, except where expressly stated. -
University of Nevada Reno Paleoecology of Upper Triassic
University of Nevada Reno Paleoecology of Upper Triassic Bioherms in the Pilot Mountains, Mineral County, West-Central Nevada A tiles is submitted in partial fulfillment of the requirements for the degree of Master of Science in Geology by Diane Elinor Cornwall May 1979 University of Nevada Reno ACKNOWLEDGEMENTS I would like to thank Dr. James R. Firby for his supervision, support and for his guidance through those difficult "rough spots." Dan Howe was a constant source of interesting ideas and enthusiasm, especially during the early stages of the thesis project. Throughout my research Fred Gustafson and I worked together, he always being an interested and understanding coworker and friend throughout the lonely weeks of research. Dr. Joseph Lintz, Jr. was invaluable in his assistance in procurement of materials and equipment and in his unselfish desire to solve any problem. I thank Dr. Mead for joining my committee. I greatly appreciate those hearty souls who ventured out into the desert with me and braved the hazards and extremes; these include Barbara Foster, Mickie Dunn, Micheal Judge and my parents who spent all their vacations in my field area. I would also like to acknowledge the moral support given by my parents, special and other friends. i n ABSTRAC In the Pilot Mountains, Mineral County, Nevada, up to five horizons of bioherms are present within the top 76 meters of the lower member of the Upper Triassic (Karnian) Luning Formation. These bio herms are located in the carbonate portions of small terrigenous- carbonate rhythms. The biohermal mounds, less than 15 meters high^exhibit four of Wilson's (1975) seven facies. -
Octocorallia: Pennatulacea)
SCIENTIA MARINA 83(3) September 2019, 261-276, Barcelona (Spain) ISSN-L: 0214-8358 https://doi.org/10.3989/scimar.04845.26A Resurrection of the sea pen genus Ptilella Gray, 1870 and description of Ptilella grayi n. sp. from the NE Atlantic (Octocorallia: Pennatulacea) Francisco J. García-Cárdenas 1, Jim Drewery 2, Pablo J. López-González 1 1 Biodiversidad y Ecología Acuática, Departamento de Zoología, Facultad de Biología, Universidad de Sevilla, Reina Mercedes 6, 41012 Sevilla, Spain. (FJG-C) (corresponding author) E-mail: [email protected]. ORCID-iD: https://orcid.org/0000-0002-1503-9552 (PJL-G) E-mail: [email protected]. ORCID-iD: https://orcid.org/0000-0002-7348-6270 2 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, Scotland, UK, AB11 9DB. (JD) E-mail: [email protected]. ORCID-iD: https://orcid.org/0000-0003-4308-1798 Summary: The order Pennatulacea covers a group of specialized and morphologically distinct octocorals found in all oceans from intertidal areas to more than 6000 m in depth. Sea pens constitute an important structural component in marine soft- bottom communities by increasing the complexity of these environments. Despite being both morphologically distinctive and ecologically important, the taxonomy and systematics of sea pens is still poorly understood. Recent molecular studies have shown the existence of convergent morphological features, making the current familial distribution of genera unstable. The genus Pennatula Linnaeus, 1758 was one of the first described octocoral genera. It is the type genus of its family, Pennatuli- dae. Colonies of this genus have a characteristic morphology. Recent sampling efforts in the northeastern Atlantic have pro- vided a number of colonies initially attributable to the genus Pennatula. -
Size Metrics, Longevity, and Growth Rates in Umbellula Encrinus (Cnidaria: Pennatulacea) from the Eastern Canadian Arctic
Arctic Science Size metrics, longevity, and growth rates in Umbellula encrinus (Cnidaria: Pennatulacea) from the Eastern Canadian Arctic Journal: Arctic Science Manuscript ID AS-2018-0009.R1 Manuscript Type: Article Date Submitted by the Author: 19-Jun-2018 Complete List of Authors: Neves, Bárbara; Memorial University of Newfoundland Department of Biology Edinger, Evan;Draft Memorial University, Geography Wareham Hayes, Vonda; Fisheries and Oceans Canada Newfoundland and Labrador Region Devine, Brynn; Memorial University of Newfoundland Fisheries and Marine Institute Wheeland, Laura; Memorial University of Newfoundland Fisheries and Marine Institute Layne, Graham; Memorial University of Newfoundland, Earth Sciences Deep-water corals, Size distribution, Growth rings, Radiocarbon analysis, Keyword: Trace element analysis Is the invited manuscript for consideration in a Special Not applicable (regular submission) Issue?: https://mc06.manuscriptcentral.com/asopen-pubs Page 1 of 63 Arctic Science 1 Size metrics, longevity, and growth rates in Umbellula encrinus (Cnidaria: 2 Pennatulacea) from the Eastern Canadian Arctic. 3 4 Bárbara de Moura Neves1*, Evan Edinger1,2,5, Vonda Wareham Hayes3, Brynn Devine1,4, 5 Laura Wheeland4, Graham Layne5. 6 1Department of Biology, Memorial University of Newfoundland. A1B 3X9, St. John’s, NL 7 Canada. 8 2Department of Geography, Memorial University of Newfoundland. A1B 3X9, St. John’s, 9 NL Canada. 10 3Northwest Atlantic Fisheries Center,Draft Fisheries and Oceans Canada. A1C 5X1, St. John’s, 11 Canada. 12 4Marine Institute, Memorial University of Newfoundland. A1C 5R3, St. John’s, NL 13 Canada. 14 5Department of Earth Sciences, Memorial University of Newfoundland. A1B 3X9, St. 15 John’s, NL Canada. *Corresponding author. E-mail: [email protected].