Developing Fluorogenic Reagents for Detecting and Enhancing Bloody Fingerprints
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Supplementary Data for Publication
Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is © the Owner Societies 2016 Supplementary Data for Publication Synthesis of Eucalyptus/Tea Tree Oil Absorbed Biphasic Calcium phosphate-PVDF Polymer Nanocomposite Films: A Surface Active Antimicrobial System for Biomedical Application Biswajoy Bagchi1,δ, Somtirtha Banerjee1, Arpan Kool1, Pradip Thakur1,2, Suman Bhandary3, Nur Amin Hoque1 , Sukhen Das1+* 1Physics Department, Jadavpur University, Kolkata-700032, India. 2Department of Physics, Netaji Nagar College for Women, Kolkata-700092, India. 3Division of Molecular Medicine, Bose Institute, Kolkata-700054, India. +Present Address: Department of Physics, Indian Institute of Engineering Science and Technology, Shibpur, Howrah, West Bengal-711103, India. §Present Address: Fuel Cell and Battery Division, Central Glass and Ceramic Research Institute, Kolkata-700032, India. *Corresponding author’s email id: [email protected] Contact: +919433091337 Antimicrobial activity of EU and TTO treated films on E .coli and S. aureus by acridine orange/ethidium bromide (AO/EB) dual staining Live/dead cell characterization of EU/TTO film treated bacterial cultures was also done to visualize the viability under fluorescence microscope (). The treated culture suspensions after 12 and 24 hours of incubation were collected by centrifugation (5000 rpm, 20 mins). The cell pellets were resuspended in PBS. The staining solution was prepared by mixing equal parts of acridine orange (5mg/mL) and ethidium bromide (3mg/mL) in ethanol. 20μL of the staining solution is then mixed with 10μL of the resuspended solution and incubated for 15 minutes at 37°C. 10μL of this solution was then placed on a glass slide and covered with cover slip to observe under fluorescence microscope. -
The Synthesis of Fluorescent 3, 6-Dihydroxyxanthones
University of Wisconsin Milwaukee UWM Digital Commons Theses and Dissertations August 2016 The yS nthesis of Fluorescent 3, 6-dihydroxyxanthones: A Route to Substituted Fluoresceins Surajudeen Omolabake University of Wisconsin-Milwaukee Follow this and additional works at: https://dc.uwm.edu/etd Part of the Chemistry Commons Recommended Citation Omolabake, Surajudeen, "The yS nthesis of Fluorescent 3, 6-dihydroxyxanthones: A Route to Substituted Fluoresceins" (2016). Theses and Dissertations. 1299. https://dc.uwm.edu/etd/1299 This Thesis is brought to you for free and open access by UWM Digital Commons. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of UWM Digital Commons. For more information, please contact [email protected]. THE SYNTHESIS OF FLUORESCENT 3, 6-DIHYDROXYXANTHONES: A ROUTE TO SUBSTITUTED FLUORESCEINS by Surajudeen Omolabake A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science In Chemistry at University of Wisconsin-Milwaukee August 2016 ABSTRACT THE SYNTHESIS OF FLUORESCENT 3, 6-DIHYDROXYXANTHONES: A ROUTE TO SUBSTITUTED FLUORESCEIN by Surajudeen Omolabake University of Wisconsin-Milwaukee, 2016 Under the Supervision of Professor Alan W Schwabacher Xanthones belong to the family of compounds of the dibenzo-γ-pyrone framework. Naturally occurring xanthones have been reported to show a wide range of biological and medicinal activities including antifungal,19 antimalarial,20 antimicrobial,21 antiparasitic,22 anticancer,23 and inhibition of HIV activity in cells.24 Xanthones have also been used as a turn on fluorescent probe for metal ions,32 including use as pH indicators, metal ion sensors, in molecular biology, medicinal chemistry and in the construction of other dyes. -
METHYL GREEN Powder Dye, C.I. 42590
METHYL GREEN powder dye, C.I. 42590 IVD In vitro diagnostic medical device Methyl Green, Ethyl Green, BSC certified dye For Methyl Green-Pyronine Y staining, for mitochondrial staining according to Altmann INSTRUCTIONS FOR USE REF Catalogue number: MGR-P-25 (25 g) Introduction Histology, cytology and other related scientific disciplines study the microscopic anatomy of tissues and cells. In order to achieve a good tissue and cellular structure, the samples need to be stained in a correct manner. Methyl Green powder dye is used in various staining methods in microscopy. It is also used with Pyronine Y dye for one stage DNA (green) and RNA (red) staining method. It is also used as a counterstain with other reactions, such as demonstration of enzymatic activity and for mitochondrial staining according to Altmann. Product description METHYL GREEN - Biological Stain Commission (BSC) certified powder dye for preparing the solution for mitochondrial staining according to Altmann. Other preparations and reagents used in preparing the dye solution: Microscopy powder dyes, such as BioGnost's Pyronine Y dye (product code PY-P-10) Chloroform (CHCl3) Anhydrous sodium acetate for buffer solution (CH3COONa) Acetic acid, 0.1 M (CH3COOH) Preparing the dye solution Acetate buffer: 0.1 M sodium acetate solution: Dissolve 8.2 g of sodium acetate in 1000 ml of distilled/demineralized water. Mix 56.6 ml of 0.1 M sodium acetate solution and 43.4 ml of 0.1 M acetic acid. Methyl Green-Pyronin G dyes solution: Dissolve 2 g of Methyl Green dye in 100 ml of distilled/demineralized water. -
Eosin Staining
Science of H & E Andrew Lisowski, M.S., HTL (A.S.C.P.) 1 Hematoxylin and Eosin Staining “The desired end result of a tissue stained with hematoxylin and eosin is based upon what seems to be almost infinite factors. Pathologists have individual preferences for section thickness, intensities, and shades. The choice of which reagents to use must take into consideration: cost, method of staining, option of purchasing commercially-prepared or technician-prepared reagents, safety, administration policies, convenience, availability, quality, technical limitations, as well as personal preference.” Guidelines for Hematoxylin and Eosin Staining National Society for Histotechnology 2 Why Do We Stain? In order to deliver a medical diagnosis, tissues must be examined under a microscope. Once a tissue specimen has been processed by a histology lab and transferred onto a glass slide, it needs to be appropriately stained for microscopic evaluation. This is because unstained tissue lacks contrast: when viewed under the microscope, everything appears in uniform dull grey color. Unstained tissue H&E stained tissue 3 What Does "Staining" Do? . Contrasts different cells . Highlights particular features of interest . Illustrates different cell structures . Detects infiltrations or deposits in the tissue . Detect pathogens Superbly contrasted GI cells Placenta’s large blood H&E stain showing extensive vessels iron deposits There are different staining techniques to reveal different structures of the cell 4 What is H&E Staining? As its name suggests, H&E stain makes use of a combination of two dyes – hematoxylin and eosin. It is often termed as “routine staining” as it is the most common way of coloring otherwise transparent tissue specimen. -
Use of Immunofluorescence and Viability Stains in Quality Control1
Use of Immunofluorescence and Viability Stains in Quality Control1 M. J. CHILVER, J. HARRISON, and T. J. B. WEBB, Process Research Department, Allied Breweries Production Limited, Burton-on- Trent, Staffordshire, England DEM IBZ ABSTRACT has been the failure to differentiate live and dead cells. We have been studying the combined use of immunofluorescent and Immunofluorescence has been evaluated as a rapid quality control viability stains so that live and dead, culture and wild yeasts, can be technique for the detection of low levels of wild yeasts in culture yeast or differentiated on the same slide field. This paper details the results other brewery samples. Antisera have been prepared against antigenic groups A to F, pooled and absorbed with culture yeast. Using the indirect obtained when yeast samples are examined alternately with FITC- staining method and fluorescein isothiocyanate or rhodamine as exciting blue light wavelengths and rhodamine-exciting green light fluorochrome, levels as low as 10 wild yeasts per million cells can be detected and when incident fluorescent light is combined with transmitted in three hours. Combined immunofluorescence and viability staining allows white light to illuminate the specimen. the differentiation of live and dead, culture and wild yeast cells, on the same The potential use of fluorescein diacetate as a viability stain has slide by alternating the light sources. The preferred method uses fluorescein been established. Initial work by Rotman and Papermaster (22) isothiocyanate, excited by incident blue light, for wild yeast detection, was developed by Paton and Jones (21) and its use in brewery combined with methylene blue, viewed by transmitted light, for viability quality control has been described by Molzahn and Portno (19). -
DAPI (4',6-Diamidino-2-Phenylindole, Dihydrochloride) for Nucleic Acid Staining
DAPI (4',6-Diamidino-2-Phenylindole, Dihydrochloride) for nucleic acid staining Catalog number: AR1176-10 Boster’s DAPI solution is a fluorescent dye with higher efficiency for immunofluorescence microscopy. This package insert must be read in its entirety before using this product. For research use only. Not for use in diagnostic procedures. BOSTER BIOLOGICAL TECHNOLOGY 3942 B Valley Ave, Pleasanton, CA 94566 Phone: 888-466-3604 Fax: 925-215-2184 Email:[email protected] Web: www.bosterbio.com DAPI (4',6-Diamidino-2-Phenylindole, Dihydrochloride) for nucleic acid staining Catalog Number: AR1176-10 Product Overview Material DAPI dihydrochloride (MW = 350.3) Form Liquid Size 10 mL(100 assys) Concentration 1μg/ml 8 mM sodium phosphate, 2 mM potassium phosphate, 140 mM sodium chloride, 10 Buffer mM potassium chloride; pH 7.4. Storage Upon receipt store at -20°C, protect from light. Stability When stored as directed, product should be stable for one year. Molecular formula C16H15N5 • 2 HCL Excitation: DAPI 340nm Emission: DAPI 488nm Excitation: DAPI-DNA complexes 360nm Emission: DAPI-DNA complexes 460nm Thermofisher (Product No. 62247); Thermofisher (Product No. 62248); Millipore Equivalent Sigma (Product No. D9542) BOSTER BIOLOGICAL TECHNOLOGY 3942 B Valley Ave, Pleasanton, CA 94566 Phone: 888-466-3604 Fax: 925-215-2184 Email:[email protected] Web: www.bosterbio.com Notes: Type of DAPI Molecular formula Molecular weight Catalog Number DAPI dihydrochloride C16H15N5 • 2 HCL 350.25 AR1176-10 DAPI dilactate C16H15N5 • 2 C3H6O3 457.48 N/A Introduction DAPI (4',6-diamidino-2-phenylindole) is a fluorescent dye which can bind DNA strands robustly, the fluorescence being detected by fluorescence microscope. -
Novel Acridine Orange Staining Protocol and Microscopy with UV Surface Excitation Allows for Rapid Histological Assessment of Canine Cutaneous Mast Cell Tumors
Novel Acridine Orange Staining Protocol and Microscopy with UV Surface Excitation Allows for Rapid Histological Assessment of Canine Cutaneous Mast Cell Tumors Croix Griffin1, Richard Levenson2, Farzad Feredouni2, Austin Todd2 1. School of Veterinary Medicine, University of California, Davis 2. Department of Pathology and Laboratory Medicine, University of California, Davis Compression Sponge Tissue Introduction ❖ XYZ Stage Stained for 1 minute UV window ❖ Mast cell tumors (MCTs) represent up to 27% of all malignant cutaneous tumors in with 0.03% Acridine dogs. Diagnosis is easily made with cytology, however the grade of the tumor LED: 1 Orange titrated to determines prognosis and required margins. UV excitation pH 0.53 with HCl ~280 nm ❖ Grade is not typically known until at least 48 hours after the surgery, as pre-surgical incisional biopsies are impractical due to additional cost and risk to the ❖ Rinsed in phosphate Objective patient. 5, 10, or 20X buffered saline for 1 ❖ Up to 30% of all mid to high grade mast cell tumors recur when incompletely minute at 50°C Tube Lens excised. Recurrence is correlated with progression to malignancy in 59% of patients.2 Figure 1. Example of MCT removal surgery. Figure 2. Blue arrow route does Figure 3. A streamlined, robust, Figure 4. MUSE Microscope. Please ❖ Low grade tumors are unlikely to recur regardless of margin cleanliness.3 When Single or multiple biopsies can be cut by hand not require formalin fixation or yet relatively gentle MC staining visit www.musepathology.com for removed with wide margins, the patient endures unnecessary short term morbidity from the tumor bed or tumor itself. -
ACRIDINE ORANGE STAIN - for in Vitro Use Only - Catalogue No
ACRIDINE ORANGE STAIN - For in vitro use only - Catalogue No. SA16 Our Acridine Orange Stain is used as a Quality Control fluorescent staining agent to detect the presence of bacteria in blood cultures and other bodily fluids. After checking for correct pH, colour, depth, Acridine orange is a fluorochrome dye that and sterility, the following organisms are used to can interchalate into nucleic acid. At a low pH determine the growth performance of the under UV light, bacterial and fungal nucleic acid completed medium. fluoresces orange whereas background mammalian nucleic acid fluoresces green. This Organism Expected Results rapid fluorescent staining procedure has been reported to be more sensitive than the Gram Escherichia coli Orange fluorescence staining procedure in the detection of ATCC 25922 microorganisms in blood cultures, cerebral spinal fluid and buffy coat preparations. Acridine orange stain can also aid in the detection of Storage and Shelf Life Acanthamoeba infections, infectious keratitis, Helicobacter pylori gastritis, and cell wall Our Acridine Orange Stain should be stored in deficient-bacteria such as Mycoplasma . the upright position at room temperature. Under these conditions this medium has a shelf life of 52 Formulation per Litre weeks from the date of manufacture. Acridine Orange ......................................... 100 mg Acetate Buffer .......................................... 1000 mL Ordering Information pH 4.0 ± 0.2 Cat# Description Format SA16-250 Acridine Orange Stain 250-mL Each Recommended Procedure 1. The prepared slide is fixed in methanol and air-dried. References 2. Flood the slide with Acridine Orange Stain. Allow the stain to sit on the slide for 2 1. Lauer BA, Reller LB, Mirrett S. -
Fluorescein) Injection 10% 2
NEW ZEALAND DATA SHEET 1. PRODUCT NAME FLUORESCITETM (fluorescein) Injection 10% 2. QUALITATIVE AND QUANTITATIVE COMPOSITION FluoresciteTM injection 10% contains 100 mg/mL fluorescein (equivalent to 113.2 mg/mL fluorescein sodium). 3. PHARMACEUTICAL FORM Solution, sterile pyrogen-free injection. Unpreserved with a pH of 8.0 to 9.8. 4. CLINICAL PARTICULARS 4.1. Therapeutic indications Indicated in diagnostic fluorescein angiography or angioscopy of the fundus and of the iris vasculature. 4.2. Dose and method of administration The usual adult dose is the contents of one FluoresciteTM injection 10% vial (5 mL of 10% solution) via intravenous administration. For children, the dose is calculated on the basis of 8 mg/kg of body weight. Parenteral drug products should be inspected visually for particulate matter and discolouration prior to administration. Do not mix or dilute with other solutions or drugs. Flush intravenous cannulae before and after drugs are injected to avoid physical incompatibility reactions. Product is for single use in one patient only. Discard any residue. Contains no antimicrobial agent. Inject the contents of the vial rapidly into the antecubital vein after taking precautions to avoid extravasation. A syringe filled with FluoresciteTM injection 10% is attached to transparent tubing and a 23 gauge butterfly needle for injection. Insert the needle and draw the patient's blood to the hub of the syringe so that a small air bubble separates the patient's blood in the tubing from the FluoresciteTM injection 10%. With the room lights on, slowly inject the blood back into the vein while watching the skin over the needle tip. -
Basics of Hematology and Patho-Histology
Basics of Hematology and Patho-histology Practical Course in Molecular Pathology Winter Term 2015 Ernst Müllner MFPL (Max F Perutz Laboratories) Department of Medical Biochemistry Medical University of Vienna [email protected] www.mfpl.ac.at/mfpl-group/group/muellner.html (Müllner homepage / research) E. coli + macrophages medicalschool.tumblr.com/post/43914024728/sem-image-of-e-coli-bacteria-and-macrophages medicalschool.tumblr.com/post/18256087351/r ed-blood-cells-erythrocytes-trapped-by-fibrin Overview on main white blood cell (WBC) types – (Wikipedia) Mature white blood cell types I White Blood cells (WBCs) are frequently also referred to as peripheral blood mononuclear cells (PBMCs). Granulocytes in general are part of the innate immune system. Names derive from staining with hematoxylin and eosin. Whereas basophils stain dark blue and eosinophils are bright red, neutrophils stain neutral to pink. Basophil granulocytes Eosinophil granulocytes Neutrophil granulocytes Least common granulocyte type About 1-6% of WBCs; component Most abundant WBC type (40- (0.01- 0.3% of WBCs. Large of innate immune system to com- 75%) and essential part of the cytoplasmic granules obscure the bat parasites and certain infec- innate immune system. A patho- nucleus under the microscope. tions; also associated with allergy gen is likely to first encounter a When unstained, the nucleus is and asthma. Following activation, neutrophil. Normally contain a nu- visible and usually has 2 lobes. eosinophils effector functions in- cleus of 2-5 lobes. Neutrophils Basophils appear in inflammatory clude production and release (de- quickly congregate at a infection reactions, particularly those granulation) of cytotoxic substan- site, attracted by cytokines from causing allergies, mainly via the ces (granule proteins, reactive activated endothelium, mast cells, vasodilator histamine (antihistami- oxygen species …) and production or macrophages. -
Binding of Acridine Orange to DNA in Situ of Cells from Patients with Acute Leukemia1
(CANCER RESEARCH 49. .1692-3695. July 1. 1989] Binding of Acridine Orange to DNA in Situ of Cells from Patients with Acute Leukemia1 Alexander J. Walle2 and George Y. Wong Cornell Õ'nirersily Medical (allege /A. J. H'./and Memorial Sloan-Kettering Cancer Ccaler ¡G.Y. W.], New York, New York 10021 ABSTRACT cytes bound AO in a manner significantly different from that of human leukemic blood lymphoblasts [L3 variety of the Fluorescence flow cytometry was used to generate DNA histograms of French-American-British classification (6)]. We quantitatively at nilim- orange stained leukemic cell populations in G(I-G| phase of the described the interaction of AO with DNA of leukemic cell cell cycle. Complexes of the intercalating agent, acridine orange, with populations in G0-G| phase of the cell cycle by measuring the double-stranded DNA in situ, emit green fluorescence upon excitation with blue laser light. The histograms were evaluated by tirsi determining standard deviation of green fluorescence intensity pulses emit ted from AO-DNA complexes in single cells around the mean the standard deviation of the fluorescence intensity relative to the mean channel of fluorescence, i.e., the coefficient of variation, and then dividing channel of the fluorescence histograms. This represents the CV the coefficient of variation of a patient's sample by that of a control of the fluorescence intensity histograms (Fig. 1). To standardize sample (rCV). The mean rCV of cell populations of acute lymphoblastic and calculate the CVs of patient cell histograms, and subse leukemia (31 patients) differed significantly from that of nonlymphoblas- quently to analyze the quantitative differences between the tic leukemia (21 patients). -
Pyronin Method for DNA and RNA Detection in Cells
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/339943427 MOLECULAR BIOLOGY PRACTICALS. Practical 3. Methyl green - pyronin method for DNA and RNA detection in cells. Chapter · March 2020 CITATIONS READS 0 45 3 authors: Boris M. Sharga Diana B. Pylypiv Uzhhorod National University 15 PUBLICATIONS 0 CITATIONS 60 PUBLICATIONS 85 CITATIONS SEE PROFILE SEE PROFILE Volodymir Feketa Uzhhorod National University 58 PUBLICATIONS 4 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: The role of micropumping function of the skeletal muscles in systemic hemodynamics View project radiation protection View project All content following this page was uploaded by Boris M. Sharga on 15 March 2020. The user has requested enhancement of the downloaded file. 11 Uzhhorod National University Medical Faculty №2 Department of Fundamental Medical Disciplines MOLECULAR BIOLOGY PRACTICALS. Practical 3. Methyl green - pyronin method for DNA and RNA detection in cells. Compiled by Boris M. Sharga, Diana B. Pylypiv, Volodymir P. Feketa Theoretical background. Methyl green-pyronin (MGP) staining is a classical technique utilizing two basic dyes for the detection and differentiation of DNA and RNA. This cytochemical procedure allows to study nucleic acids without their extraction from the cells [24]. Methyl green (MG) or CI 42585 is a stain with positive charge (Fig. 1, A). Friedrich Miescher, a Swiss physician and biologist discovered the DNA in 1869 and was first who used MG for staining of this macromolecule preparations [2]. Currently, the fluorescent DNA staining of nuclei by MG is used for far-red visualization of live cell nuclei and in malignant tumor prognosis [11, 19, 20].