A Method for Automatically Building and Evaluating Dictionary Resources
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Biomedical Entity Representations with Synonym Marginalization
Biomedical Entity Representations with Synonym Marginalization Mujeen Sung Hwisang Jeon Jinhyuk Leey Jaewoo Kangy Korea University fmujeensung,j hs,jinhyuk lee,[email protected] Abstract Unlike named entities from general domain text, typical biomedical entities have several different Biomedical named entities often play impor- surface forms, making the normalization of biomed- tant roles in many biomedical text mining ical entities very challenging. For instance, while tools. However, due to the incompleteness two chemical entities ‘motrin’ and ‘ibuprofen’ be- of provided synonyms and numerous varia- tions in their surface forms, normalization of long to the same concept ID (MeSH:D007052), biomedical entities is very challenging. In this they have completely different surface forms. paper, we focus on learning representations of On the other hand, mentions having similar sur- biomedical entities solely based on the syn- face forms could also have different meanings onyms of entities. To learn from the incom- (e.g. ‘dystrophinopathy’ (MeSH:D009136) and plete synonyms, we use a model-based candi- ‘bestrophinopathy’ (MeSH:C567518)). These ex- date selection and maximize the marginal like- amples show a strong need for building latent rep- lihood of the synonyms present in top candi- dates. Our model-based candidates are itera- resentations of biomedical entities that capture se- tively updated to contain more difficult neg- mantic information of the mentions. ative samples as our model evolves. In this In this paper, we propose a novel framework for way, we avoid the explicit pre-selection of learning biomedical entity representations based on negative samples from more than 400K can- the synonyms of entities. -
DICTIONARY News
Number 17 y July 2009 Kernerman kdictionaries.com/kdn DICTIONARY News KD’s BLDS: a brief introduction In 2005 K Dictionaries (KD) entered a project of developing We started by establishing an extensive infrastructure both dictionaries for learners of different languages. KD had already contentwise and technologically. The lexicographic compilation created several non-English titles a few years earlier, but those was divided into 25 projects: 1 for the French core, 8 for the were basic word-to-word dictionaries. The current task marked dictionary cores of the eight languages, another 8 for the a major policy shift for our company since for the first time we translation from French to eight languages, and 8 more for the were becoming heavily involved in learner dictionaries with translation of each language to French. target languages other than English. That was the beginning of An editorial team was set up for developing each of the nine our Bilingual Learners Dictionaries Series (BLDS), which so (French + 8) dictionary cores. The lexicographers worked from far covers 20 different language cores and keeps growing. a distance, usually at home, all over the world. The chief editor The BLDS was launched with a program for eight French for each language was responsible for preparing the editorial bilingual dictionaries together with Assimil, a leading publisher styleguide and the list of headwords. Since no corpora were for foreign language learning in France which made a strategic publicly available for any of these languages, each editor used decision to expand to dictionaries in cooperation with KD. different means to retrieve information in order to compile the The main target users were identified as speakers of French headword list. -
WME 3.0: an Enhanced and Validated Lexicon of Medical Concepts
WME 3.0: An Enhanced and Validated Lexicon of Medical Concepts Anupam Mondal1 Dipankar Das1 Erik Cambria2 Sivaji Bandyopadhyay1 1Department of Computer Science and Engineering 2School of Computer Science and Engineering Jadavpur University, Kolkata, India Nanyang Technological University, Singapore [email protected], [email protected] [email protected], 1sivaji cse [email protected] Abstract However, medical text is in general unstructured since doctors do not like to fill forms and pre- Information extraction in the medical do- fer free-form notes of their observations. Hence, main is laborious and time-consuming due a lexical design is difficult due to lack of any to the insufficient number of domain- prior knowledge of medical terms and contexts. specific lexicons and lack of involve- Therefore, we are motivated to enhance a med- ment of domain experts such as doctors ical lexicon namely WordNet of Medical Events and medical practitioners. Thus, in the (WME 2.0) which helps to identify medical con- present work, we are motivated to de- cepts and their features. In order to enrich this sign a new lexicon, WME 3.0 (WordNet lexicon, we have employed various well-known of Medical Events), which contains over resources like conventional WordNet, SentiWord- 10,000 medical concepts along with their Net (Esuli and Sebastiani, 2006), SenticNet (Cam- part of speech, gloss (descriptive expla- bria et al., 2016), Bing Liu (Liu, 2012), and nations), polarity score, sentiment, sim- Taboada’s Adjective list (Taboada et al., 2011) ilar sentiment words, category, affinity and a preprocessed English medical dictionary1 on score and gravity score features. -
A Study of Chinese Medical Students As Dictionary Users and Potential Users for an Online Medical Termfinder
Lexicography ASIALEX https://doi.org/10.1007/s40607-017-0031-9 ORIGINAL PAPER A study of Chinese medical students as dictionary users and potential users for an online medical termfinder Jun Ding1 Received: 2 May 2017 / Accepted: 12 November 2017 Ó Springer-Verlag GmbH Germany, part of Springer Nature 2017 Abstract This paper examines the dictionary use of Chinese medical students as ESP learners and their trial experience with the online Health Termfinder (HTF), a specialized dictionary tool for medical terms. Empirical data were collected first from a survey among a group of medical students at Fudan University on their previous dictionary-use behaviors and initial response to the introduction to the HTF and its bilingualization, and second from an assignment of using the bilingualized HTF for reading comprehension with the same group of students. The survey findings reveal that the medical students in general are aware of the importance of dictionaries in their ESP learning in spite of the alarming fact that the majority of them have not even used any English medical dictionaries (monolingual or bilin- gual). They are thus quite open to the idea of using an online termbank of spe- cialized medical terms. But the HTF assignment findings also show that proper guidance and training is necessary for the termbank to be made actually useful for the lexical needs of Chinese ESP learners. It is also expected that the students’ feedback on their HTF experience, especially their demand for the termbank to include more cross-disciplinary medical terms, could be taken into consideration by the HTF builders. -
Examining the Usefulness of Medical Bilingual Dictionaries for Translation Purposes
International Journal of Linguistics ISSN 1948-5425 2019, Vol. 11, No. 6 Examining the Usefulness of Medical Bilingual Dictionaries for Translation Purposes Fatima Al Qaisiya (Corresponding author) Department of English Language and Literature The University of Jordan, Jordan E-mail: [email protected] Rajai Rasheed Al-Khanji University of Jordan, Jordan Received: October 29, 2019 Accepted: November 11, 2019 Published: December 22, 2019 doi:10.5296/ijl.v11i6.15723 URL: https://doi.org/10.5296/ijl.v11i6.15723 Abstract This paper aims at examining the effectiveness of four medical bilingual English-Arabic dictionaries for translational purposes. This is done by investigating the provided information used in the presentation of a number of medical words in the examined dictionaries. The results reveal an inconsistency in the presentation of the selected words in the dictionaries; which might be correlated to the lack of provision policies given by the compilers of the dictionaries. Moreover, an inadequacy in the provision of semantic, pragmatic, and encyclopedic information was noticed which would be inadequate for translational purposes. However, it was found that the Unified Medical dictionary covered more types of information like the provision of encyclopedic illustrations and pictorial illustration. Keywords: Medical words, Bilingual medical dictionaries, Dictionary and translation 1. Introduction The disciplines of translation and lexicography are linked to each other in 'give and take' operations (Hartmann, 2004). In this regard, translation is considered as the supplier of translation equivalents to bilingual dictionaries and a customer of information provided by lexicographers to translators, (Hartmann, 2004). In his article 'Lexicography and Translation', www.macrothink.org/ijl 229 International Journal of Linguistics ISSN 1948-5425 2019, Vol. -
From Wordnet to Medical Wordnet
Journal of Biomedical Informatics 39 (2006) 321–332 www.elsevier.com/locate/yjbin Towards new information resources for public health—From WORDNET to MEDICALWORDNET Christiane Fellbaum a,b,*, Udo Hahn c, Barry Smith d,e a Department of Psychology, Princeton University Green Hall, Washington Rd., Princeton, NJ 08544, United States b Berlin-Bradenburg Academy of Science, Berlin, Germany c Jena University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universita¨t Jena, Jena, Germany d IFOMIS, Universita¨t des Saarlandes, Saarbru¨cken, Germany e Department of Philosophy, State University of New York at Buffalo, USA Received 21 July 2005 Available online 24 October 2005 Abstract In the last two decades, WORDNET has evolved as the most comprehensive computational lexicon of general English. In this article, we discuss its potential for supporting the creation of an entirely new kind of information resource for public health, viz. MEDICALWORDNET. This resource is not to be conceived merely as a lexical extension of the original WORDNET to medical terminology; indeed, there is already a considerable degree of overlap between WORDNET and the vocabulary of medicine. Instead, we propose a new type of repository, consisting of three large collections of (1) medically relevant word forms, structured along the lines of the existing Princeton WORDNET; (2) medically validated propositions, referred to here as medical facts, which will consti- tute what we shall call MEDICALFACTNET; and (3) propositions reflecting laypersonsÕ medical beliefs, which will constitute what we shall call the MEDICALBELIEFNET. We introduce a methodology for setting up the MEDICALWORDNET. We then turn to the discus- sion of research challenges that have to be met to build this new type of information resource. -
English Medical Terminology – Different Ways of Forming Medical Terms
JAHR Vol. 4 No. 7 2013 Original scientific article Božena Džuganová* English medical terminology – different ways of forming medical terms ABSTRACT In medical terminology, two completely different phenomena can be seen: 1. precisely worked-out and internationally standardised anatomical nomenclature and 2. quickly devel- oping non-standardised terminologies of individual clinical branches. While in the past new medical terms were mostly formed morphologically by means of derivation and composition from Latin and Greek word-forming components, nowadays it is the syntactic method which prevails – the forming of terminological compounds that subsequently turn into abbrevia- tions. Besides the most frequent ways of term formation, there are also some marginal ways, the results of which are acronyms, backcronyms, eponyms, toponyms, mythonyms etc. To understand the meaning of these rather rare medical terms requires us to become familiar with their etymology and motivation. In our paper we will take a look at individual ways of word-formation with focus on marginal procedures. Keywords: English medical terminology, derivation, composition, compound terms, abbre- viations, acronyms, backronyms, eponyms, toponyms, mythonyms In the last century clinical medicine developed into many new branches. Internal medicine for example started to specialise in cardiology, endocrinology, gastroenter- ology, haematology, infectology, nephrology, oncology, pulmonology, rheumatology etc. All this could happen thanks to the great development of science and technolo- gy. New diagnostic devices and methods were invented, e.g. computer tomography, sonograph, mammograph, laparoscope, endoscope, colonoscope, magnetic reso- * Correspondence address: PhDr. Božena Džuganová, PhD., Comenius University, Jessenius Faculty of Medicine, Department of Foreign Languages, Martin, Slovakia, e-mail: [email protected] 55 JAHR Vol. -
Ontoterminology Meets Lexicography: the Multimodal Online Dictionary of Endometriosis (MODE) Sara Carvalho, Rute Costa, Christophe Roche
Ontoterminology meets Lexicography: the Multimodal Online Dictionary of Endometriosis (MODE) Sara Carvalho, Rute Costa, Christophe Roche To cite this version: Sara Carvalho, Rute Costa, Christophe Roche. Ontoterminology meets Lexicography: the Multimodal Online Dictionary of Endometriosis (MODE). GLOBALEX 2016: Lexicographic Resources for Human Language Technology Workshop at the 10th International Conference on Language Resources and Evaluation (LREC’16)., 2016, Portoroz, Slovenia. hal-01829907 HAL Id: hal-01829907 https://hal.archives-ouvertes.fr/hal-01829907 Submitted on 4 Jul 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Ontoterminology meets Lexicography: the Multimodal Online Dictionary of Endometriosis (MODE) Sara Carvalho123, Rute Costa23, Christophe Roche32 1 School of Technology and Management – University of Aveiro R. Comandante Pinho e Freitas, 28 3750-127 Águeda - Portugal 2 NOVA CLUNL – Faculty of Social Sciences and Humanities – Universidade NOVA de Lisboa Av. de Berna, 26-C 1069-061 Lisboa – Portugal 3 Condillac Research Group – LISTIC – Université de Savoie Mont Blanc Campus Scientifique 73376 Le Bourget du Lac – France E-mail: [email protected], [email protected], [email protected] Abstract With the advent of the Semantic Web and, more recently, of the Linked Data initiative, the need to operationalise lexicographic resources, i.e. -
Characterizing the Definitions of Anatomical Concepts in Wordnet and Specialized Sources
Characterizing the definitions of anatomical concepts in WordNet and specialized sources Olivier BODENREIDER Anita BURGUN National Library of Medicine Laboratoire d’Informatique Médicale 8600 Rockville Pike Avenue du Pr Léon Bernard Bethesda, MD, 20894 35043 Rennes Cedex, France [email protected] [email protected] Abstract Objectives : The objective of this study is to characterize the definitions of anatomical concepts in a general terminological system (WordNet) and a domain-specific one (a medical dictionary). Methods : Definitions were first classified into five groups with respect to the nature of the definition. The principal noun phrase (or head) of the definiens was then compared to the definiendum through a reference hierarchy of anatomical concepts. Results : This study confirms the predominance of genus-differentia definitions for anatomical terms. Hierarchical relationships are, as expected, the principal type of relationships found between the definiendum and the head of the definiens. Discussion : Differences in the characteristics of the definitions between WordNet and medical dictionaries are presented and discussed. Introduction We are interested in characterizing the definitions of medical terms in various sources in order to get a better understanding of their structure. Our ultimate goal, though, is to obtain a representation of the definitions in a formalism such as conceptual graphs in order to compare definitions from various sources. This study is part of a larger project aimed at comparing definitions of medical terms in specialized sources such as medical dictionaries with those in general resources such as WordNet . In other words, our goal is to compare definitions of medical terms for health professionals and for users of consumer health applications. -
Building a Database Driven Reverse Medical Dictionary
International Journal of Computer Science Trends and Technology (IJCST) – Volume 5 Issue 2, Mar – Apr 2017 RESEARCH ARTICLE OPEN ACCESS Building A Database Driven Reverse Medical Dictionary Pragya Tripathi Guide: Manjusha Deshmukh Department of Computer Science Engineering Pillai Institution of Information Technology, New Panvel University of Mumbai, India ABSTRACT The project aimed to build a fully functional system called as reverse medical dictionary in order to achieve the efficiency in fast health treatment consultation system. Reverse medical dictionary allows users to get instant guidance on their health issues through an intelligent health care system. Simply we say that user can search their illness according to their symptoms at any point of time and get instant diagnosis. Keywords :— NLP, WordNet, WSD (word sense disambiguation), Semantic Similarity. I. INTRODUCTION Information plays very vital and important role in this modern in natural language text and make computers learns our civilization to step forward in every sphere from earth to language rather than we learn theirs. NLP is very important ocean, earth to planet, earth to sky. People are discovering topic in todays world of internet. amazing inventions at a rapid pace based on information. Therefore, it is important that the information we are using WordNet should be accurate. WordNet is a lexical database of English and is the product of a research project at Princeton University. It was designed to The proposed system is fed with various symptoms and the establish the connections between Parts of Speech (POS) disease/illness associated with those symptoms. The system which includes noun, verb, adjective, and adverb. -
French Specialised Medical Constructions: Lexicographic Treatment and Corpus Coverage in General and Specialised Dictionaries
French Specialised Medical Constructions: Lexicographic Treatment and Corpus Coverage in General and Specialised Dictionaries Ornella Wandji Tchami12, Ulrich Heid2, Natalia Grabar1 STL1 UMR 8163 CNRS, University of Lille3; IWIST2, University of Hildesheim e-mail: [email protected], [email protected], [email protected] Abstract The aim of this paper is to examine four French dictionaries : the on-line Larousse, the Petit Robert (2009), the Larousse Médical, and the TLFi, with regard to the way specialised verbal expressions and syntactico-semantic constructions (extracted from two medical subcorpora differentiated according to the level of expertise of their author and readership) are introduced and described within and across the resources. According to our results, specialised verbal expressions and constructions are not given an important place in the queried resources, even in the medical dictionary. Very few of the studied expressions and constructions are found in the analysed dictionaries, and those which are presented are not given a homogeneous and consistent description. Keywords: verb argument structure; specialised verb usage; lexicography; terminography; corpus analysis; phraseology; preferred co-occurrence and collocation 1 Context Standard medical language contains specific terminology and specialised phraseology which are hard to understand for non-expert users (McCray 2005; Zeng-Treiler et al. 2007), and which can therefore render the communication difficult between medical doctors and patients (Jucks & Bromme 2007; Tran et al. 2009). Studies have been conducted in different domains in order to find ways to improve communication between doctors and patients (Kharrazi 2009; Chy et al. 2012; Kokkinakis & Toporowska Gronostaj 2006; Smith and Wicks 2008; Zeng-Treiler & Tse 2006; Chmielik & Grabar 2011). -
Medical Term Formation in English and Japanese: a Study of the Suffixes -Gram, -Graph and -Graphy
Medical term formation in English and Japanese: A study of the suffixes -gram, -graph and -graphy Carlos Herrero-Zorita, Clara Molina, Antonio Moreno Sandoval Universidad Autónoma de Madrid This paper presents a translingual study of medical lexicology in English and in Japanese that compares the meaning and usage of three suffixes often found in medical discourse: -gram, -graph and -graphy. By means of an in-depth observation of frequency counts and semantic profiling in actual usage, we present a proposal regarding which roots each of the suffixes allow, together with an analysis of the meaning subtleties of the affixes. This work, informed by both cognitive and corpus linguistics, advances the presence of a concurrent pattern in English-Japanese morphology within medical discourse. After presenting a number of significant parallelisms and differences between both languages within the corpora, however, the work concludes with an explanation of how and why the three suffixes under inspection display quite distinct meaning nuances that restrains them from being used at random, both in English and in Japanese. Keywords: medical terminology, derivative morphology, Japanese, English, conceptual blending. 1. Introduction This work compares the way in which two languages, English and Japanese, make use of three highly frequent suffixes in medical discourse, namely, -gram, -graph and -graphy. Medical discourse stands as a rich data source for lexical enquiry, if only for the large number of long-standing studies on the matter, ranging from the Hippocratic corpus to Harris’s theory of the sublanguage at the basis of Natural Language Processing (Friedman, Kra & Rzhetsky, 2002), to name but a couple.