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The Ascomycota
Papers and Proceedings of the Royal Society of Tasmania, Volume 139, 2005 49 A PRELIMINARY CENSUS OF THE MACROFUNGI OF MT WELLINGTON, TASMANIA – THE ASCOMYCOTA by Genevieve M. Gates and David A. Ratkowsky (with one appendix) Gates, G. M. & Ratkowsky, D. A. 2005 (16:xii): A preliminary census of the macrofungi of Mt Wellington, Tasmania – the Ascomycota. Papers and Proceedings of the Royal Society of Tasmania 139: 49–52. ISSN 0080-4703. School of Plant Science, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia (GMG*); School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, Tasmania 7001, Australia (DAR). *Author for correspondence. This work continues the process of documenting the macrofungi of Mt Wellington. Two earlier publications were concerned with the gilled and non-gilled Basidiomycota, respectively, excluding the sequestrate species. The present work deals with the non-sequestrate Ascomycota, of which 42 species were found on Mt Wellington. Key Words: Macrofungi, Mt Wellington (Tasmania), Ascomycota, cup fungi, disc fungi. INTRODUCTION For the purposes of this survey, all Ascomycota having a conspicuous fruiting body were considered, excluding Two earlier papers in the preliminary documentation of the endophytes. Material collected during forays was described macrofungi of Mt Wellington, Tasmania, were confined macroscopically shortly after collection, and examined to the ‘agarics’ (gilled fungi) and the non-gilled species, microscopically to obtain details such as the size of the -
Ethnomacrofungal Study of Some Wild Macrofungi Used by Local Peoples of Gorakhpur District, Uttar Pradesh
Indian Journal of Natural Products and Resources Vol. 10(1), March 2019, pp 81-89 Ethnomacrofungal study of some wild macrofungi used by local peoples of Gorakhpur district, Uttar Pradesh Pratima Vishwakarma* and N N Tripathi Bacteriology & Natural Pesticide Laboratory, Department of Botany, DDU Gorakhpur University, Gorakhpur, 273009, U.P, India Received 14 January; 2018 Revised 11 March 2019 Gorakhpur district having varied environmental condition is sanctioned with wealth of many important macrofungi but only few works has been done here to explore the diversity. The present investigation focus on the ethnomacrofungal study of Gorakhpur district. From information obtained it became clear that many macrofungi are widely consumed here by local and tribal peoples as food and medicines. Species of Daldinia, Macrolepiota, Pleurotus, Termitomyces, etc. are used to treat various ailments. Thus the present study clearly states that Gorakhpur district is reservoir of macrofungi having nutritional and medicinal benefits. Keywords: Bhar, Bhuj, Kewat, Local villagers, Macrofungi, Tharu. IPC code; Int. cl. (2015.01)- A61K 36/00 Traditional medicine or ethno medicine is a healthcare economical benefit. The wild mushrooms have been practice that has been transmitted orally from traditionally consumed by man with delicacy generation to generation through traditional healers probably, for their taste and pleasing flavour. They with an aim to cure different ailments and is strongly have rich nutritional value with high content of associated to religious beliefs and practices of the proteins, vitamins, minerals, fibres, trace elements indigenous people1,2. Since the beginning of human and low calories and cholesterol6. civilization man has been using many herbs and There are lots of works which had been done herbal extracts as medicine. -
Early Illustrations of Xylaria Species
North American Fungi Volume 3, Number 7, Pages 161-166 Published August 29, 2008 Formerly Pacific Northwest Fungi Early illustrations of Xylaria species Donald H. Pfister Farlow Herbarium, Harvard University, 22 Divinity Avenue, Cambridge, MA 02138 USA Pfister, D. H. 2008. Early illustrations of Xylaria species. North American Fungi 3(7): 161-166. doi: 10.2509/naf2008.003.0079 Corresponding author: [email protected]. Accepted for publication May 1, 2008. http://pnwfungi.org Copyright © 2008 Pacific Northwest Fungi Project. All rights reserved. Abstract: Four 17th and early 18th Century examples of illustrations of Xylaria species are presented. One of the earliest illustrations of a Xylaria species is that in Mentzel’s Pugillus rariorum plantarum published in 1682 and which Fries referred to Sphaeria polymorpha. An 1711 illustration by Marchant is noteworthy in the detail of the observations; perithecia and ascospores are noted and illustrated. Marchant considered this fungus to be related to marine corals. The plate was subsequently redone and incorporated by Micheli in his 1729 publication, Nova plantarum genera; this Micheli plate was listed by Fries under a different species, Sphaeria digitata. Although Fries mentions several illustrations of Sphaeria hypoxylon not all the sources he cited contain illustrations. The earliest illustration associated 162 Pfister. Early illustrations of Xylaria species. North American Fungi 3(7): 161-166 with this species that was located is Micheli’s in 1729. These illustrations are included along with discussion of the authors and books in which the illustrations appear. Key words: Fries, Marchant, Mentzel, Micheli, Xylaria, early illustrations The genus Xylaria Hill ex Schrank is one that literature related to the illustrations, and to many people recognize but only few understand. -
Volatile Constituents of Endophytic Fungi Isolated from Aquilaria Sinensis with Descriptions of Two New Species of Nemania
life Article Volatile Constituents of Endophytic Fungi Isolated from Aquilaria sinensis with Descriptions of Two New Species of Nemania Saowaluck Tibpromma 1,2,3,†, Lu Zhang 4,†, Samantha C. Karunarathna 1,2,3, Tian-Ye Du 1,2,3, Chayanard Phukhamsakda 5,6 , Munikishore Rachakunta 7 , Nakarin Suwannarach 8,9 , Jianchu Xu 1,2,3,*, Peter E. Mortimer 1,2,3,* and Yue-Hu Wang 4,* 1 CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; [email protected] (S.T.); [email protected] (S.C.K.); [email protected] (T.-Y.D.) 2 World Agroforestry Centre, East and Central Asia, Kunming 650201, China 3 Centre for Mountain Futures, Kunming Institute of Botany, Kunming 650201, China 4 Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; [email protected] 5 Institute of Plant Protection, College of Agriculture, Jilin Agricultural University, Changchun 130118, China; [email protected] 6 Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China 7 State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; [email protected] Citation: Tibpromma, S.; Zhang, L.; 8 Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; Karunarathna, S.C.; Du, T.-Y.; [email protected] Phukhamsakda, C.; Rachakunta, M.; 9 Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Suwannarach, N.; Xu, J.; Mortimer, Chiang Mai 50200, Thailand P.E.; Wang, Y.-H. -
Phylogenetic Assignment of the Fungicolous Hypoxylon Invadens (Ascomycota, Xylariales) and Investigation of Its Secondary Metabolites
microorganisms Article Phylogenetic Assignment of the Fungicolous Hypoxylon invadens (Ascomycota, Xylariales) and Investigation of its Secondary Metabolites Kevin Becker 1,2 , Christopher Lambert 1,2,3 , Jörg Wieschhaus 1 and Marc Stadler 1,2,* 1 Department of Microbial Drugs, Helmholtz Centre for Infection Research GmbH (HZI), Inhoffenstraße 7, 38124 Braunschweig, Germany; [email protected] (K.B.); [email protected] (C.L.); [email protected] (J.W.) 2 German Centre for Infection Research Association (DZIF), Partner site Hannover-Braunschweig, Inhoffenstraße 7, 38124 Braunschweig, Germany 3 Department for Molecular Cell Biology, Helmholtz Centre for Infection Research GmbH (HZI) Inhoffenstraße 7, 38124 Braunschweig, Germany * Correspondence: [email protected]; Tel.: +49-531-6181-4240; Fax: +49-531-6181-9499 Received: 23 July 2020; Accepted: 8 September 2020; Published: 11 September 2020 Abstract: The ascomycete Hypoxylon invadens was described in 2014 as a fungicolous species growing on a member of its own genus, H. fragiforme, which is considered a rare lifestyle in the Hypoxylaceae. This renders H. invadens an interesting target in our efforts to find new bioactive secondary metabolites from members of the Xylariales. So far, only volatile organic compounds have been reported from H. invadens, but no investigation of non-volatile compounds had been conducted. Furthermore, a phylogenetic assignment following recent trends in fungal taxonomy via a multiple sequence alignment seemed practical. A culture of H. invadens was thus subjected to submerged cultivation to investigate the produced secondary metabolites, followed by isolation via preparative chromatography and subsequent structure elucidation by means of nuclear magnetic resonance (NMR) spectroscopy and high-resolution mass spectrometry (HR-MS). -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
<I>Abieticola Koreana</I>
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 © 2016. Mycotaxon, Ltd. October–December 2016—Volume 131, pp. 749–764 http://dx.doi.org/10.5248/131.749 Abieticola koreana gen. et sp. nov., a griseofulvin-producing endophytic xylariaceous ascomycete from Korea Hyang Burm Lee1*, Hye Yeon Mun1,2, Thi Thuong Thuong Nguyen1, Jin-Cheol Kim1 & Jeffrey K. Stone3 1College of Agriculture & Life Sciences, Chonnam National University, Gwangju 61186, Republic of Korea 2Fungal Resources Research Division, Nakdonggang National Institute of Biological Resources, Sangju 37242, Republic of Korea 3Department of Botany & Plant Pathology, Cordley Hall 2082, Oregon State University, Corvallis, OR 97331-2902, USA *Correspondence to: [email protected] Abstract—A new genus and species. Abieticola koreana, is described. This xylariaceous fungus was isolated from the inner bark of a Manchurian fir (Abies holophylla) in Korea. Phylogenetic analyses based on the sequences of four gene regions—ITS1-5.8S-ITS2, 28S, β-tubulin, and rpb2—were used to confirm this new genus and species. Key words—Ascomycota, anamorph, multigene, Xylarioideae, Xylariaceae Introduction The Xylariaceae is a large family of ascomycetes comprising approximately 85 genera and at least 1,340 species that are distributed worldwide and exhibit exceptional diversity in the tropics (Whalley 1996, Velmurugan et al. 2013, Stadler et al. 2014). It has been estimated that the Xylariaceae contains 10,000 undescribed species (Stadler 2011, Richardson et al. 2014). Recent phylogenetic studies (Tang et al. 2009, Daranagama et al. 2015) using combined ITS, LSU, rpb2, and β-tubulin sequences, suggested that Xylariaceae has two major lineages, Xylarioideae and Hypoxyloideae. To date, 11 genera of Xylariaceae have been shown to occur as endophytes of various plants (Pažoutová et al. -
Resurrection and Emendation of the Hypoxylaceae, Recognised from a Multigene Phylogeny of the Xylariales
Mycol Progress DOI 10.1007/s11557-017-1311-3 ORIGINAL ARTICLE Resurrection and emendation of the Hypoxylaceae, recognised from a multigene phylogeny of the Xylariales Lucile Wendt1,2 & Esteban Benjamin Sir3 & Eric Kuhnert1,2 & Simone Heitkämper1,2 & Christopher Lambert1,2 & Adriana I. Hladki3 & Andrea I. Romero4,5 & J. Jennifer Luangsa-ard6 & Prasert Srikitikulchai6 & Derek Peršoh7 & Marc Stadler1,2 Received: 21 February 2017 /Revised: 12 April 2017 /Accepted: 19 April 2017 # The Author(s) 2017. This article is an open access publication Abstract A multigene phylogeny was constructed, including polymerase II (RPB2), and beta-tubulin (TUB2). Specimens a significant number of representative species of the main were selected based on more than a decade of intensive mor- lineages in the Xylariaceae and four DNA loci the internal phological and chemotaxonomic work, and cautious taxon transcribed spacer region (ITS), the large subunit (LSU) of sampling was performed to cover the major lineages of the the nuclear rDNA, the second largest subunit of the RNA Xylariaceae; however, with emphasis on hypoxyloid species. The comprehensive phylogenetic analysis revealed a clear-cut This article is part of the “Special Issue on ascomycete systematics in segregation of the Xylariaceae into several major clades, honor of Richard P. Korf who died in August 2016”. which was well in accordance with previously established morphological and chemotaxonomic concepts. One of these The present paper is dedicated to Prof. Jack D. Rogers, on the occasion of his fortcoming 80th birthday. clades contained Annulohypoxylon, Hypoxylon, Daldinia,and other related genera that have stromatal pigments and a Section Editor: Teresa Iturriaga and Marc Stadler nodulisporium-like anamorph. -
Proceedings of the Indiana Academy of Science
Xylarias of Indiana 225 SOME XYLARIAS OF INDIANA. Stacy Hawkins, Indiana University. Xylarias have been collected for many years in various counties of the state, but we have studied them particularly from localities near Indiana University. The most striking thing about this interesting- genus is the small number of species found in proportion to the large number of individuals that occur throughout the world. However, the wide distribution and the frequent occurrence of our few species is equally striking. There is no intention in this brief paper to make a complete list of the species. World Distribution. Xylarias are almost world-wide in their dis- tribution. They are far more abundant in the tropics, but retain their peculiar characteristics in all regions. They are, for the most part, saprophytic but are capable of becoming parasitic and infecting living plants under certain conditions. Of the many reports of parasitism, mention may be made of the infection of coconut palms in East Africa and the infection of the rubber plant, Hevea, in Asiatic regions from Ceylon to the East Indies. For the most part, the growth of the fungus is limited to the roots or the bases of trees but in some regions (mainly tropical) they have been found frequently on fallen limbs, fallen herba- ceous material, and dead leaves. In Europe, considerable trouble is experienced by the hastening of decay of oak grape vine stakes by species of Xylaria. Behavior of Certain Species in United States. Xylarias are found growing on the roots of living beech, maple, oak, and other forest trees and are considered saprophytic as there seems to be no apparent injury to the host. -
Endophytic Species of Xylaria: Cultural and Isozymic Studies
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Sydowia Jahr/Year: 1993 Band/Volume: 45 Autor(en)/Author(s): Rodrigues K. F., Leuchtmann A., Petrini Orlando Artikel/Article: Endophytic species of Xylaria: cultural and isozymic studies. 116-138 ©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.biologiezentrum.at Endophytic species of Xylaria: cultural and isozymic studies K. F. Rodrigues , A. Leuchtmann & 0. Petrini 'The New York Botanical Garden, Bronx, New York, 10458-5126, USA 2Geobotanisches Institut ETH, Zollikerstrasse 107, CH-8008 Zurich, Switzerland 'Mikrobiologisches Institut, ETH-Zentrum, CH-8092 Zurich, Switzerland Rodrigues, K.F., A. Leuchtmann & O. Petrini (1993). Endophytic species of Xylaria: cultural and isozymic studies. - Sydowia 45 (1): 116-138. Cultural descriptions of endophytic Xylaria species from an Amazonian palm, Euterpe oleracea, are presented. Eighty-one isolates representing 15 species of Xylaria were examined for isozyme variation by means of horizontal starch gel electrophoresis. Results from the isozyme analysis revealed a high degree of intra- and interspecific diversity among Xylaria species. Keywords: endophytes, isozymes, tropical fungi, Xylariaceae, Euterpe oleracea. The genus Xylaria and other members of the Xylariaceae are commonly isolated endophytes. The identification at the species level of putative endophytic Xylaria grown in culture is still a difficult task because they rarely produce morphologically diagnostic structures, and teleomorphs are seldom formed. Indeed, many of them may differ from free-living forms and some might not produce the teleomorph at all (Brunner & Petrini, 1992). Anamorphs produced in culture are re- latively easy to identify to the genus because of their typical stromata, conidiophores and conidial development. -
Characterizing Fungal Decay of Beech Wood: Potential for Biotechnological Applications
microorganisms Article Characterizing Fungal Decay of Beech Wood: Potential for Biotechnological Applications Ehsan Bari 1,* , Katie Ohno 2, Nural Yilgor 3 , Adya P. Singh 4, Jeffrey J. Morrell 5, Antonio Pizzi 6 , Mohammad Ali Tajick Ghanbary 7 and Javier Ribera 8,* 1 Department of Wood Science and Engineering, Section of Wood Microbiology and Genetic, Technical Faculty of No. 1, Mazandaran Branch, Technical and Vocational University (TVU), Sari 4816831168, Iran 2 USDA Forest Service, Forest Products Laboratory, One Gifford Pinchot Drive, Madison, WI 53726, USA; [email protected] 3 Department of Forest Products Chemistry and Technology Division, Forest Industry Engineering, Forestry Faculty, Istanbul University Cerrahpa¸sa,34473 Istanbul, Turkey; [email protected] 4 Scion, Rotorua 3046, New Zealand; [email protected] 5 National Centre for Timber Durability and Design Life, University of the Sunshine Coast, Brisbane 4102, Australia; [email protected] 6 ENSTIB-LERMAB, University of Lorraine, BP 21042, CEDEX 09, 88051 Epinal, France; [email protected] 7 Department of Mycology and Plant Pathology, College of Agronomic Sciences, Sari Agricultural Sciences and Natural Resources University, Sari 4818166996, Iran; [email protected] 8 Laboratory for Cellulose & Wood Materials, Empa-Swiss Federal Laboratories for Materials Science and Technology, CH-9014 St. Gallen, Switzerland * Correspondence: [email protected] (E.B.); [email protected] (J.R.); Tel.: +98-9354367572 (E.B.); +41-587657607 (J.R.) Abstract: The biotechnological potential of nine decay fungi collected from stored beech logs at a pulp and paper factory yard in Northern Iran was investigated. Beech blocks exposed to the Citation: Bari, E.; Ohno, K.; Yilgor, fungi in a laboratory decay test were used to study changes in cell wall chemistry using both wet N.; Singh, A.P.; Morrell, J.J.; Pizzi, A.; chemistry and spectroscopic methods. -
High Quality Genome Sequences of Thirteen Hypoxylaceae (Ascomycota) Strengthen the Phylogenetic Family Backbone and Enable the Discovery of New Taxa
Fungal Diversity https://doi.org/10.1007/s13225-020-00447-5 High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa Daniel Wibberg1 · Marc Stadler2 · Christopher Lambert2 · Boyke Bunk3 · Cathrin Spröer3 · Christian Rückert1 · Jörn Kalinowski1 · Russell J. Cox4 · Eric Kuhnert4 Received: 19 December 2019 / Accepted: 12 May 2020 © The Author(s) 2020 Abstract The Hypoxylaceae (Xylariales, Ascomycota) is a diverse family of mainly saprotrophic fungi, which commonly occur in angiosperm-dominated forests around the world. Despite their importance in forest and plant ecology as well as a prolifc source of secondary metabolites and enzymes, genome sequences of related taxa are scarce and usually derived from envi- ronmental isolates. To address this lack of knowledge thirteen taxonomically well-defned representatives of the family and one member of the closely related Xylariaceae were genome sequenced using combinations of Illumina and Oxford nanopore technologies or PacBio sequencing. The workfow leads to high quality draft genome sequences with an average N50 of 3.0 Mbp. A backbone phylogenomic tree was calculated based on the amino acid sequences of 4912 core genes refecting the current accepted taxonomic concept of the Hypoxylaceae. A Percentage of Conserved Proteins (POCP) analysis revealed that 70% of the proteins are conserved within the family, a value with potential application for the defnition of family boundaries within the order Xylariales. Also, Hypomontagnella spongiphila is proposed as a new marine derived lineage of Hypom. monticulosa based on in-depth genomic comparison and morphological diferences of the cultures. The results showed that both species share 95% of their genes corresponding to more than 700 strain-specifc proteins.