Gila Chub (Gila Intermedia) DRAFT RECOVERY PLAN
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Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys Cobitis) and Spikedace (Meda Fulgida) in the Southwestern United States
RESEARCH ARTICLE Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys cobitis) and Spikedace (Meda fulgida) in the Southwestern United States Joseph C. Dysthe1*, Kellie J. Carim1, Yvette M. Paroz2, Kevin S. McKelvey1, Michael K. Young1, Michael K. Schwartz1 1 United States Department of Agriculture, Forest Service, National Genomics Center for Wildlife and Fish Conservation, Rocky Mountain Research Station, Missoula, MT, United States of America, 2 United States a11111 Department of Agriculture, Forest Service, Southwestern Region, Albuquerque, NM, United States of America * [email protected] Abstract OPEN ACCESS Loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) are legally protected Citation: Dysthe JC, Carim KJ, Paroz YM, McKelvey with the status of Endangered under the U.S. Endangered Species Act and are endemic to KS, Young MK, Schwartz MK (2016) Quantitative the Gila River basin of Arizona and New Mexico. Efficient and sensitive methods for moni- PCR Assays for Detecting Loach Minnow ’ (Rhinichthys cobitis) and Spikedace (Meda fulgida)in toring these species distributions are critical for prioritizing conservation efforts. We devel- the Southwestern United States. PLoS ONE 11(9): oped quantitative PCR assays for detecting loach minnow and spikedace DNA in e0162200. doi:10.1371/journal.pone.0162200 environmental samples. Each assay reliably detected low concentrations of target DNA Editor: Michael Hofreiter, University of York, UNITED without detection of non-target species, including other cyprinid fishes with which they co- KINGDOM occur. Received: April 27, 2016 Accepted: August 18, 2016 Published: September 1, 2016 Copyright: This is an open access article, free of all Introduction copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used Loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) are cyprinid fishes that were by anyone for any lawful purpose. -
Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
Gila Topminnow Revised Recovery Plan December 1998
GILA TOPMINNOW, Poeciliopsis occidentalis occidentalis, REVISED RECOVERY PLAN (Original Approval: March 15, 1984) Prepared by David A. Weedman Arizona Game and Fish Department Phoenix, Arizona for Region 2 U.S. Fish and Wildlife Service Albuquerque, New Mexico December 1998 Approved: Regional Director, U.S. Fish and Wildlife Service Date: Gila Topminnow Revised Recovery Plan December 1998 DISCLAIMER Recovery plans delineate reasonable actions required to recover and protect the species. The U.S. Fish and Wildlife Service (Service) prepares the plans, sometimes with the assistance of recovery teams, contractors, State and Federal Agencies, and others. Objectives are attained and any necessary funds made available subject to budgetary and other constraints affecting the parties involved, as well as the need to address other priorities. Time and costs provided for individual tasks are estimates only, and not to be taken as actual or budgeted expenditures. Recovery plans do not necessarily represent the views nor official positions or approval of any persons or agencies involved in the plan formulation, other than the Service. They represent the official position of the Service only after they have been signed by the Regional Director or Director as approved. Approved recovery plans are subject to modification as dictated by new findings, changes in species status, and the completion of recovery tasks. ii Gila Topminnow Revised Recovery Plan December 1998 ACKNOWLEDGMENTS Original preparation of the revised Gila topminnow Recovery Plan (1994) was done by Francisco J. Abarca 1, Brian E. Bagley, Dean A. Hendrickson 1 and Jeffrey R. Simms 1. That document was modified to this current version and the work conducted by those individuals is greatly appreciated and now acknowledged. -
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES Tables STEPHEN T. ROSS University of California Press Berkeley Los Angeles London © 2013 by The Regents of the University of California ISBN 978-0-520-24945-5 uucp-ross-book-color.indbcp-ross-book-color.indb 1 44/5/13/5/13 88:34:34 AAMM uucp-ross-book-color.indbcp-ross-book-color.indb 2 44/5/13/5/13 88:34:34 AAMM TABLE 1.1 Families Composing 95% of North American Freshwater Fish Species Ranked by the Number of Native Species Number Cumulative Family of species percent Cyprinidae 297 28 Percidae 186 45 Catostomidae 71 51 Poeciliidae 69 58 Ictaluridae 46 62 Goodeidae 45 66 Atherinopsidae 39 70 Salmonidae 38 74 Cyprinodontidae 35 77 Fundulidae 34 80 Centrarchidae 31 83 Cottidae 30 86 Petromyzontidae 21 88 Cichlidae 16 89 Clupeidae 10 90 Eleotridae 10 91 Acipenseridae 8 92 Osmeridae 6 92 Elassomatidae 6 93 Gobiidae 6 93 Amblyopsidae 6 94 Pimelodidae 6 94 Gasterosteidae 5 95 source: Compiled primarily from Mayden (1992), Nelson et al. (2004), and Miller and Norris (2005). uucp-ross-book-color.indbcp-ross-book-color.indb 3 44/5/13/5/13 88:34:34 AAMM TABLE 3.1 Biogeographic Relationships of Species from a Sample of Fishes from the Ouachita River, Arkansas, at the Confl uence with the Little Missouri River (Ross, pers. observ.) Origin/ Pre- Pleistocene Taxa distribution Source Highland Stoneroller, Campostoma spadiceum 2 Mayden 1987a; Blum et al. 2008; Cashner et al. 2010 Blacktail Shiner, Cyprinella venusta 3 Mayden 1987a Steelcolor Shiner, Cyprinella whipplei 1 Mayden 1987a Redfi n Shiner, Lythrurus umbratilis 4 Mayden 1987a Bigeye Shiner, Notropis boops 1 Wiley and Mayden 1985; Mayden 1987a Bullhead Minnow, Pimephales vigilax 4 Mayden 1987a Mountain Madtom, Noturus eleutherus 2a Mayden 1985, 1987a Creole Darter, Etheostoma collettei 2a Mayden 1985 Orangebelly Darter, Etheostoma radiosum 2a Page 1983; Mayden 1985, 1987a Speckled Darter, Etheostoma stigmaeum 3 Page 1983; Simon 1997 Redspot Darter, Etheostoma artesiae 3 Mayden 1985; Piller et al. -
Food Habits of Imperiled Plains Topminnow and Diet Overlap With
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Transactions of the Nebraska Academy of Sciences Nebraska Academy of Sciences and Affiliated Societies Winter 3-1-2018 Food habits of imperiled Plains Topminnow and diet overlap with invasive Western Mosquitofish in the Central Great Plains Joseph Thiessen University of Nebraska at Kearney, [email protected] Keith D. Koupal Nebraska Game and Parks Commission, [email protected] Casey W. Schoenebeck University of Nebraska at Kearney, [email protected] Julie J. Shaffer University of Nebraska, Kearney Follow this and additional works at: https://digitalcommons.unl.edu/tnas Part of the Population Biology Commons, and the Terrestrial and Aquatic Ecology Commons Thiessen, Joseph; Koupal, Keith D.; Schoenebeck, Casey W.; and Shaffer, Julie J., "Food habits of imperiled Plains Topminnow and diet overlap with invasive Western Mosquitofish in the Central Great Plains" (2018). Transactions of the Nebraska Academy of Sciences and Affiliated Societies. 513. https://digitalcommons.unl.edu/tnas/513 This Article is brought to you for free and open access by the Nebraska Academy of Sciences at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Transactions of the Nebraska Academy of Sciences and Affiliated Societies by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Food habits of imperiled Plains Topminnow and diet overlap with invasive Western Mosquitofish in the Central Great Plains Joseph D. Thiessen,1,4 Keith D. Koupal,2 Casey W. Schoenebeck,1,3 and Julie J. Shaffer 1 1 Department of Biology, University of Nebraska at Kearney, Kearney, NE 68849 2 Nebraska Game and Parks Commission, Kearney Field Office, Kearney, NE 68847 3 Present address: Minnesota Department of Natural Resources, 23070 North Lakeshore Drive, Glenwood, MN 56334 4 Present address: Idaho Department of Fish and Game, 1414 E. -
Draft Genome Assembly and Annotation of the Gila Topminnow Poeciliopsis Occidentalis
DATA REPORT published: 24 October 2019 doi: 10.3389/fevo.2019.00404 Draft Genome Assembly and Annotation of the Gila Topminnow Poeciliopsis occidentalis Mariana Mateos 1*, Du Kang 2, Christophe Klopp 3, Hugues Parrinello 4, Mateo García-Olazábal 2,5, Molly Schumer 6, Nathaniel K. Jue 7, Yann Guiguen 8 and Manfred Schartl 2,5,9,10* 1 Department of Wildlife and Fisheries Sciences, Texas A&M University, College Station, TX, United States, 2 Physiological Chemistry, Biocenter, University of Wuerzburg, Würzburg, Germany, 3 Mathématiques et Informatique Appliquées de Toulouse (MIAT) and Système d’information du projet d’analyse des génomes des animaux d’élevage (SIGENAE), INRA, Toulouse, France, 4 MGX, Bio Montpellier, CNRS, INSERM, University of Montpellier, Montpellier, France, 5 Department of Biology, Texas A&M University, College Station, TX, United States, 6 Howard Hughes Medical Institute (HHMI) and Department of Biology, Stanford University, Stanford, CA, United States, 7 Department of Biology and Chemistry, California State University Monterey Bay, Seaside, CA, United States, 8 INRA, UR1037 Fish Physiology and Genomics, Rennes, France, Edited by: 9 Developmental Biochemistry, Biocenter, University of Wuerzburg, Würzburg, Germany, 10 Hagler Institute for Advanced Guillermo Orti, Studies, Texas A&M University, College Station, TX, United States George Washington University, United States Keywords: genome assembly, genome annotation, transposable elements, topminnow, mitochondrial genome Reviewed by: Federico Guillermo Hoffmann, Mississippi State University, INTRODUCTION United States Klaus-Peter Koepfli, The freshwater livebearing fish genus Poeciliopsis (Poeciliidae) constitutes a valuable research Smithsonian Conservation Biology system for questions within the field of evolutionary ecology, including life history evolution Institute (SI), United States (e.g., multiple origins of placentas), intergenomic conflict, evolution of sex (with the existence of *Correspondence: several asexual hybrid biotypes), and biogeography (reviewed in Mateos et al., 2019). -
Classification Success of Species Within the Gila Robusta Complex Using Morphometric and Meristic Characters—A Reexamination Authors: Julie Meka Carter, Matthew J
Classification Success of Species within the Gila robusta Complex Using Morphometric and Meristic Characters—A Reexamination Authors: Julie Meka Carter, Matthew J. Clement, Andy S. Makinster, Clayton D. Crowder, and Brian T. Hickerson Source: Copeia, 106(2) : 279-291 Published By: American Society of Ichthyologists and Herpetologists URL: https://doi.org/10.1643/CG-17-614 BioOne Complete (complete.BioOne.org) is a full-text database of 200 subscribed and open-access titles in the biological, ecological, and environmental sciences published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Complete website, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/terms-of-use. Usage of BioOne Complete content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Downloaded From: https://bioone.org/journals/Copeia on 17 Jun 2019 Terms of Use: https://bioone.org/terms-of-use Access provided by Arizona Game & Fish Department Copeia 106, No. 2, 2018, 279–291 Classification Success of Species within the Gila robusta Complex Using Morphometric and Meristic Characters—A Reexamination Julie Meka Carter1, Matthew J. Clement2, Andy S. Makinster3,4, Clayton D. Crowder3, and Brian T. Hickerson3,5 Three cyprinids often referred to as the Gila robusta complex, G. -
Upper Gila Watershed (HUC8 15040001)
Upper Gila Watershed (HUC8 15040001) Rapid Watershed Assessment Upper Gila Watershed 1 Upper Gila Watershed (HUC8 15040001) The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, age, disability, and where applicable, sex, marital status, familial status, parental status, religion, sexual orientation, genetic information, political beliefs, reprisal, or because all or a part of an individual's income is derived from any public assistance program. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contact USDA's TARGET Center at (202) 720-2600 (voice and TDD). To file a complaint of discrimination writ e to USDA, Director, Office of Civil Rights, 1400 Independence Avenue, S.W., Washington, D.C. 20250-9410 or call (800) 795-3272 (voice) or (202) 720-6382 (TDD). USDA is an equal opportunity provider and employer. 2 Upper Gila Watershed (HUC8 15040001) Table of Contents Overview ......................................................................................................................................... 5 Physical Setting ............................................................................................................................... 7 Precipitation .................................................................................................................................. 10 Land -
Roundtail Chub (Gila Robusta) Status Survey of the Lower Colorado River Basin
ROUNDTAIL CHUB (GILA ROBUSTA) STATUS SURVEY OF THE LOWER COLORADO RIVER BASIN Jeremy B. Voeltz, Wildlife Technician Nongame Branch, Wildlife Management Division Final Report to The Central Arizona Project Native Fish Conservation and Nonnative Aquatic Species Management and Control Program U.S. Fish and Wildlife Service Ecological Services Field Office Phoenix, Arizona and U.S. Bureau of Reclamation Phoenix Area Office Phoenix, Arizona Technical Report 186 Nongame and Endangered Wildlife Program Program Manager: Terry B. Johnson Arizona Game and Fish Department 2221 West Greenway Road Phoenix, Arizona 85023-4399 January 2002 CIVIL RIGHTS AND DIVERSITY COMPLIANCE The Arizona Game and Fish Commission receives federal financial assistance in Sport Fish and Wildlife Restoration. Under Title VI of the 1964 Civil Rights Act, Section 504 of the Rehabilitation Act of 1973, Title II of the Americans with Disabilities Act of 1990, the Age Discrimination Act of 1975, Title IX of the Education Amendments of 1972, the U.S. Department of the Interior prohibits discrimination on the basis of race, color, religion, national origin, age, sex, or disability. If you believe you have been discriminated against in any program, activity, or facility as described above, or if you desire further information please write to: Arizona Game and Fish Department Office of the Deputy Director, DOHQ 2221 West Greenway Road Phoenix, Arizona 85023-4399 and The Office for Diversity and Civil Rights U.S. Fish and Wildlife Service 4040 North Fairfax Drive, Room 300 Arlington, Virginia 22203 AMERICANS WITH DISABILITIES ACT COMPLIANCE The Arizona Game and Fish Department complies with all provisions of the Americans with Disabilities Act. -
Status of Climate and Water Resources at Tumacácori National Historical Park Water Year 2016
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science Status of Climate and Water Resources at Tumacácori National Historical Park Water Year 2016 Natural Resource Report NPS/SODN/NRR—2017/1552 ON THE COVER Discharge sampling along the Santa Cruz River, Tumacácori National Historical Park. NPS photo. Status of Climate and Water Resources at Tumacácori National Historical Park Water Year 2016 Natural Resource Report NPS/SODN/NRR—2017/1552 Prepared by Evan L. Gwilliam Laura Palacios Sonoran Desert Network National Park Service 12661 E. Broadway Blvd. Tucson, AZ 85748 Kara Raymond Southern Arizona Office 3636 N. Central Ave., Suite 410 Phoenix, AZ 85012 Editing and Design Alice Wondrak Biel Sonoran Desert Network National Park Service 12661 E. Broadway Blvd. Tucson, AZ 85748 November 2017 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and oth- ers in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. The series supports the advancement of science, informed decision- making, and the achievement of the National Park Service mission. The series also provides a forum for presenting more lengthy results that may not be accepted by publications with page limitations. -
Programmatic Evaluation: Activities of The
Programmatic Evaluation ACTIVITIES OF THE U.S. FISH AND WILDLIFE SERVICE FISHERIES PROGRAM Sport Fishing FY 2005–2009 and Boating Partnership Council SPORT FISHING AND BOATING PARTNERSHIP COUNCIL Sport Fishing & Boating Partnership Council Programmatic Evaluation Activities of the U.S. Fish and Wildlife Service Fisheries Program FY 2005–2009 Report of the 2009 Ad Hoc Evaluation Team to the Sport Fishing and Boating Partnership Council June 21, 2010 PROGRAMMATIC ASSESSMENT OF THE FISHERIES PROGRAM SPORT FISHING AND BOATING PARTNERSHIP COUNCIL Table of Contents Report Summary and Findings i Introduction 1 Conduct of the Evaluation 2 PROGRAMMATIC EVALUATION 1. Accountability 9 Context 9 Basis for Evaluation 10 Results 11 Accountability to Authorities 11 Accountability to Stakeholders and Partners 13 Accountability to Open, Interactive Communication 15 Accountability through Performance Reporting Systems 15 Findings and Observations 18 Recommendations to Increase Effectiveness 20 2. Habitat Conservation and Management 21 Context 21 Basis for Evaluation 22 Results 23 National Fish Habitat Action Plan 23 National Fish Passage Program 28 Fish and Wildlife Conservation Offices 30 Findings and Observations 33 Recommendations to Increase Effectiveness 34 3. Species Conservation and Management 35 Context 35 Basis for Evaluation 35 Results 36 Native Species 36 Robust Redhorse Conservation Efforts (Box) 39 Interjurisdictional Species 39 Aquatic Invasive Species 40 Findings and Observations 43 Recommendations to Increase Effectiveness 45 4. Cooperation