(12) United States Patent (10) Patent No.: US 9.228,204 B2 Pulst Et Al

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(12) United States Patent (10) Patent No.: US 9.228,204 B2 Pulst Et Al USOO9228204B2 (12) United States Patent (10) Patent No.: US 9.228,204 B2 Pulst et al. (45) Date of Patent: Jan. 5, 2016 (54) CONSTRUCTS FOR MAKING INDUCED 2010, O184051 A1 7/2010 Hochedlinger et al. PLURPOTENT STEM CELLS 2010/0279.404 A1 11/2010 Yamanaka et al. 2010.0311171 A1 12/2010 Nakanishi et al. (71) Applicant: University of Utah Research Foundation, Salt Lake City, UT (US) FOREIGN PATENT DOCUMENTS EP 2263705 12/2010 (72) Inventors: Stefan M. Pulst, Salt Lake City, UT KR 2009 OO83761 8, 2009 (US); Sharan Paul, Salt Lake City, UT WO WO 2008,151058 12/2008 (US); Warunee Dansithong, Salt Lake WO WO 2009/007852 1, 2009 City, UT (US) WO WO 2009/092042 T 2009 WO WO 2009,093O22 T 2009 WO WO 2009/096614 8, 2009 (73) Assignee: University of Utah Research WO WO 2009/131262 10/2009 Foundation, Salt Lake City, UT (US) WO WO 2009,133971 11, 2009 WO WO 2009,140655 11, 2009 (*) Notice: Subject to any disclaimer, the term of this WO WO 2009, 149233 12/2009 patent is extended or adjusted under 35 WO WO 2009,152485 12/2009 U.S.C. 154(b) by 0 days. WO WO 2010/017562 2, 2010 WO WO 2010/O19569 2, 2010 WO WO 2010/028O19 3, 2010 (21) Appl. No.: 13/975,004 WO WO 2010/036923 4/2010 (22) Filed: Aug. 23, 2013 OTHER PUBLICATIONS (65) Prior Publication Data Takahashi (Cell, 2006, vol. 126:663-676).* US 2014/O 170752 A1 Jun. 19, 2014 Yu (Science, 2007, vol. 318, p. 1917-1920).* Nakagawa (Nat Biotechnol, Jan. 2008, vol. 26: 101-106; published Related U.S. Application Data online Nov. 11, 2007).* Okita (Science, Nov. 7, 2008, vol. 322, p. 949-953).* (63) Continuation-in-part of application No. 13/960,305, Feng (Cell StemCell, Apr. 3, 2009, vol. 4, p. 301-312).* filed on Aug. 6, 2013, now abandoned, which is a Shao (Expert Opin. Biol. Ther. Feb. 2010, vol. 10, No. 1, p. 231 continuation of application No. PCT/US2012/025117, 242).* filed on Feb. 14, 2012. Aoi (Science, Aug. 1, 2008, vol. 321, No. 5889, p. 699-702, available (60) Provisional application No. 61/442,695, filed on Feb. online Feb. 14, 2008).* 14, 2011. Aasen (Nature Biotech., Nov. 2008, vol. 26, No. 11, p. 1276-1284).* Sugii (PNAS, Feb. 23, 2010, vol. 107, No. 8, p. 3558-3563).* (51) Int. C. Stadtfeld (Cell StemCell, Mar. 6, 2008, vol. 2, p. 230-240; published CI2N IS/00 (2006.01) online Feb. 14, 2008).* CI2N 15/86 (2006.01) Carey (PNAS, 2009, vol. 106, p. 157-162).* CI2N 5/074 (2010.01) Carey (Nature Methods, Jan. 2010, vol. 7, No. 1, p. 46-59).* (52) U.S. C. Sommer (Stem Cells, 2009, 27, 543-549).* CPC .............. CI2N 15/86 (2013.01); C12N5/0696 Kaji (Nature, Apr. 9, 2009, vol. 458, p. 771-776).* (2013.01); C12N 2501/602 (2013.01); C12N Gonzalez (PNAS, Jun. 2, 2009, vol. 106, No. 22, p. 8918-8922).* 2501/603 (2013.01); C12N 2501/604 (2013.01); CI2N 2501/606 (2013.01); C12N 2510/00 Paul, Annals of Neurol., 2012, vol. 72, Suppl. 16, pp. S103).* (2013.01); C12N 27.10/10343 (2013.01) Toes (PNAS, Dec. 1997, vol. 94, p. 14660-14665).* (58) Field of Classification Search (Continued) USPC ....................................................... 435/320.1 See application file for complete search history. Primary Examiner — Michael Wilson (56) References Cited (74) Attorney, Agent, or Firm — Thorpe North & Western U.S. PATENT DOCUMENTS LLP 2009/0047263 A1 2/2009 Yamanaka et al. 2009,019 1159 A1 7/2009 Sakurada et al. (57) ABSTRACT 2009,019 1171 A1 T/2009 Ma 2009/0227032 A1 9/2009 Yamanaka et al. Systems, constructs, and methods for reprogramming cells 2009, O246875 A1 10/2009 Yamanaka et al. 2009,0299763 A1 12/2009 Sakurada are provided. In one aspect, for example, a transformation 20090304646 A1 12/2009 Sakurada et al. construct for generating iPS cells can include an expression 2010.0003757 A1 1/2010 Macket al. vector having a plurality of reprogramming factors, each 2010.0062534 A1 3/2010 Hochedlinger et al. reprogramming factor being under control of a separate pro 2010.0075421 A1 3/2010 Yamanaka et al. 2010/0105100 A1 4/2010 Sakurada et al. moter. 2010, 0120069 A1 5/2010 Sakurada et al. 2010, O150889 A1 6, 2010 Townes et al. 2010.0167291 A1 7/2010 Rosenberg et al. 12 Claims, 15 Drawing Sheets US 9.228,204 B2 Page 2 (56) References Cited Montserrat, et al.; "Generation of Pig iPS Cells: A Model for Cell Therapy; Journal of Cardiovascular Translational Research, 2011; OTHER PUBLICATIONS vol. 4, No. 2, Nov. 19, 2010; pp. 121-130. Okita, et al., “Induced pluripotent stem cells: opportunities and chal Carey, et al., “Reprogramming of murine and human somatic cells lenges”; Phil. Trans. R. Soc. B 2011, 366, pp. 2198-2207. Pourfathollah, et al.; “Generation of Induced Pluripotent Stem (IPS) using a single polycistronic vector'; vol. 106, No. 1; Dec. 24, 2008; Cells with Adenovectors Carrying embryonically Expressed Human pp. 157-162. Genes'; vol. 1, No. Supp. 2, Nov. 19, 2011; 2 pages. Gonzalez, et al., “Generation of mouse-induced pluripotent stem Shao, et al.; "Gene-delivery systems for IPS cell generation'; Feb. 1. cells by transient expression of a single noviral polycistronic vector': 2010; pp. 1-19; PubMed Central (PMC) Author Manuscript Expert vol. 106; No. 22: pp. 8918-8922. Opin. Biol. Ther. Lai, et al., “Advancements in reprogramming strategies for the gen Stadtfeld, et al.: “Induced Pluripotent StemCells Generated Without eration of induced pluripotent stem cells'; Journal of Assisted Repro viral Integration'. Science, American Association for the Advance duction and Genetics, Publishers-Plenum Publishers; vol. 28; No. 4, ment of Science, Washington, DC; vol. 322, No. 5903, Nov. 7, 2008. Mar. 9, 2011. Zhou, et al.; "Adenoviral Gene Delivery Can Reprogram Human Liu, et al.: “Induced Pluripotent Stem (iPS) Cell Research Over Fibroblasts to Induced Pluripotent StemCells'; vol. 27, No. 11, Nov. view”; Cell Transplantation; vol. 20, No. 1; pp. 15-19, 2011. 1, 2009: pp. 2667-2674. Lowry, et al.; "The many ways to make an iPS cell'; vol. 26, No. 11, Nov. 1, 2008, Nature Biotechnology. * cited by examiner U.S. Patent Jan. 5, 2016 Sheet 1 of 15 US 9.228,204 B2 psokciv-Adshuttle vector xxi-xxy- exix. : ionoiogo as Recottiratio if yies in Bacteria & s 8.33 t : g:8:Kxxx xxxasy - w8xxx - 08 Wirts Proction G. U.S. Patent Jan. 5, 2016 Sheet 2 of 15 US 9.228,204 B2 pSOKc citasy- wector FG. A s: øbin?spw-woyosd| s: Actin Y Acti: G. 2B U.S. Patent Jan. 5, 2016 Sheet 3 of 15 US 9.228,204 B2 SXC iAxi-Soix FG, 3A inefite of experinetta design Ray RS fircasts sittire Day & Acieao viruses pay 3 Change media every day through ay pays 4-7 k Stem cesis tike E. Ad-sok ... colonies appeared G. 38 U.S. Patent Jan. 5, 2016 Sheet 4 of 15 US 9.228,204 B2 FG. 4A iPS lies N Na Y O O O C e e e e TER GDF3 GAPDH FG. 43 U.S. Patent Jan. 5, 2016 Sheet 5 Of 15 US 9.228,204 B2 ice for assfortation Rece As Actin and Associsk SOX oct34 and Act CYCar Actin Raf Acis c:R Wester to F.G. 5C G 53 U.S. Patent Jan. 5, 2016 Sheet 6 of 15 US 9.228,204 B2 PSCs kx :. A. is 8 x: --a Reprogramming efficiency SP 1.2 CH re HY s 0.8 .5 GAPDH pa2.5X10 - 3& sSg S Actinr i o.2o r& as SS HY As-St. A-ScNK F.G. 6A FG. 88 s Articies s Asixties G. A G. 78 U.S. Patent Jan. 5, 2016 Sheet 7 Of 15 US 9.228,204 B2 ES celi-marker genes E : Sao Ad-GFP 3. 8 Ai-Sychik 20 it to a Ais f F.G. 8A sw ES ceil-marker genes 8 8A-GP S 6 8 Ai-S 4 s 2 s s ( OCT3f4 E. : : F.G. 8C ES ceii-starker geries 48 8sic 8:ASC: S. $ 2.3 s 30 : a lack. a. 33. A 3 G. 8) ES ceivikarker gets 8:8 ce:ii-retarker gettes &As &ases 3. 3. 8883 S$383 8. k FG 8E G. 8 U.S. Patent Jan. 5, 2016 Sheet 8 of 15 US 9.228,204 B2 Ai assay isis- A.S. s i-Sick :38; 8 3xy: : 3 U.S. Patent Jan. 5, 2016 Sheet 9 Of 15 US 9.228,204 B2 is s f s R-R d fittikkes Asixties iS s 8Ances ER GABRB3 Notal. Rec F.G. O. U.S. Patent Jan. 5, 2016 Sheet 10 of 15 US 9.228,204 B2 iss; 8 Y 3. As d sixties Rick G. U.S. Patent Jan. 5, 2016 Sheet 11 of 15 US 9.228,204 B2 F.G. 12 U.S. Patent Jan. 5, 2016 Sheet 12 of 15 US 9.228,204 B2 FG, 3 Erassistics &s &.8 &.88 & 888& 8888 888 x8 8x: 8:3 8xxx Eise xftraxxistics start: 8: F.G. 14 U.S. Patent Jan. 5, 2016 Sheet 13 of 15 US 9.228,204 B2 Ac-GFP {x-xxxx es e m m ha sa A aw W. a is . - s r. * r or r a to r to r to sa en err e in . ce es es e er es ess r a to a w is SSSSSSSSSS F.G.
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