On Balanced Separators, Treewidth, and Cycle Rank
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Exclusive Graph Searching Lélia Blin, Janna Burman, Nicolas Nisse
Exclusive Graph Searching Lélia Blin, Janna Burman, Nicolas Nisse To cite this version: Lélia Blin, Janna Burman, Nicolas Nisse. Exclusive Graph Searching. Algorithmica, Springer Verlag, 2017, 77 (3), pp.942-969. 10.1007/s00453-016-0124-0. hal-01266492 HAL Id: hal-01266492 https://hal.archives-ouvertes.fr/hal-01266492 Submitted on 2 Feb 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Exclusive Graph Searching∗ L´eliaBlin Sorbonne Universit´es, UPMC Univ Paris 06, CNRS, Universit´ed'Evry-Val-d'Essonne. LIP6 UMR 7606, 4 place Jussieu 75005, Paris, France [email protected] Janna Burman LRI, Universit´eParis Sud, CNRS, UMR-8623, France. [email protected] Nicolas Nisse Inria, France. Univ. Nice Sophia Antipolis, CNRS, I3S, UMR 7271, Sophia Antipolis, France. [email protected] February 2, 2016 Abstract This paper tackles the well known graph searching problem, where a team of searchers aims at capturing an intruder in a network, modeled as a graph. This problem has been mainly studied for its relationship with the pathwidth of graphs. All variants of this problem assume that any node can be simultaneously occupied by several searchers. -
Digraph Complexity Measures and Applications in Formal Language Theory
Digraph Complexity Measures and Applications in Formal Language Theory by Hermann Gruber Institut f¨urInformatik Justus-Liebig-Universit¨at Giessen Germany November 14, 2008 Introduction and Motivation Measuring Complexity for Digraphs Algorithmic Results on Cycle Rank Applications in Formal Language Theory Discussion Overview 1 Introduction and Motivation 2 Measuring Complexity for Digraphs 3 Algorithmic Results on Cycle Rank 4 Applications in Formal Language Theory 5 Discussion H. Gruber Digraph Complexity Measures and Applications Introduction and Motivation Measuring Complexity for Digraphs Algorithmic Results on Cycle Rank Applications in Formal Language Theory Discussion Outline 1 Introduction and Motivation 2 Measuring Complexity for Digraphs 3 Algorithmic Results on Cycle Rank 4 Applications in Formal Language Theory 5 Discussion H. Gruber Digraph Complexity Measures and Applications Introduction and Motivation Measuring Complexity for Digraphs Algorithmic Results on Cycle Rank Applications in Formal Language Theory Discussion Complexity Measures on Undirected Graphs Important topic in algorithmic graph theory: Structural complexity restrictions can speed up algorithms Main result: many hard problems solvable in linear time on graphs with bounded treewidth. depending on application, also other measures interesting H. Gruber Digraph Complexity Measures and Applications Introduction and Motivation Measuring Complexity for Digraphs Algorithmic Results on Cycle Rank Applications in Formal Language Theory Discussion What about Directed -
Discrete Mathematics Rooted Directed Path Graphs Are Leaf Powers
Discrete Mathematics 310 (2010) 897–910 Contents lists available at ScienceDirect Discrete Mathematics journal homepage: www.elsevier.com/locate/disc Rooted directed path graphs are leaf powers Andreas Brandstädt a, Christian Hundt a, Federico Mancini b, Peter Wagner a a Institut für Informatik, Universität Rostock, D-18051, Germany b Department of Informatics, University of Bergen, N-5020 Bergen, Norway article info a b s t r a c t Article history: Leaf powers are a graph class which has been introduced to model the problem of Received 11 March 2009 reconstructing phylogenetic trees. A graph G D .V ; E/ is called k-leaf power if it admits a Received in revised form 2 September 2009 k-leaf root, i.e., a tree T with leaves V such that uv is an edge in G if and only if the distance Accepted 13 October 2009 between u and v in T is at most k. Moroever, a graph is simply called leaf power if it is a Available online 30 October 2009 k-leaf power for some k 2 N. This paper characterizes leaf powers in terms of their relation to several other known graph classes. It also addresses the problem of deciding whether a Keywords: given graph is a k-leaf power. Leaf powers Leaf roots We show that the class of leaf powers coincides with fixed tolerance NeST graphs, a Graph class inclusions well-known graph class with absolutely different motivations. After this, we provide the Strongly chordal graphs largest currently known proper subclass of leaf powers, i.e, the class of rooted directed path Fixed tolerance NeST graphs graphs. -
Complexity and Geometry of Sampling Connected Graph Partitions
COMPLEXITY AND GEOMETRY OF SAMPLING CONNECTED GRAPH PARTITIONS LORENZO NAJT∗, DARYL DEFORDy, JUSTIN SOLOMONy Abstract. In this paper, we prove intractability results about sampling from the set of partitions of a planar graph into connected components. Our proofs are motivated by a technique introduced by Jerrum, Valiant, and Vazirani. Moreover, we use gadgets inspired by their technique to provide families of graphs where the “flip walk" Markov chain used in practice for this sampling task exhibits exponentially slow mixing. Supporting our theoretical results we present some empirical evidence demonstrating the slow mixing of the flip walk on grid graphs and on real data. Inspired by connections to the statistical physics of self-avoiding walks, we investigate the sensitivity of certain popular sampling algorithms to the graph topology. Finally, we discuss a few cases where the sampling problem is tractable. Applications to political redistricting have recently brought increased attention to this problem, and we articulate open questions about this application that are highlighted by our results. 1. Introduction. The problem of graph partitioning, or dividing the vertices of a graph into a small number of connected subgraphs that extremize an objective function, is a classical task in graph theory with application to network analytics, machine learning, computer vision, and other areas. Whereas this task is well-studied in computation and mathematics, a related problem remains relatively understudied: understanding how a given partition compares to other members of the set of possible partitions. In this case, the goal is not to generate a partition with favorable properties, but rather to compare a given partition to some set of alternatives. -
Compact Representation of Graphs with Small Bandwidth and Treedepth
Compact Representation of Graphs with Small Bandwidth and Treedepth Shahin Kamali University of Manitoba Winnipeg, MB, R3T 2N2, Canada [email protected] Abstract We consider the problem of compact representation of graphs with small bandwidth as well as graphs with small treedepth. These parameters capture structural properties of graphs that come in useful in certain applications. We present simple navigation oracles that support degree and adjacency queries in constant time and neighborhood query in constant time per neighbor. For graphs of bandwidth k, our oracle takesp (k + dlog 2ke)n + o(kn) bits. By way of an enumeration technique, we show that (k − 5 k − 4)n − O(k2) bits are required to encode a graph of bandwidth k and size n. For graphs of treedepth k, our oracle takes (k + dlog ke + 2)n + o(kn) bits. We present a lower bound that certifies our oracle is succinct for certain values of k 2 o(n). 1 Introduction Graphs are among the most relevant ways to model relationships between objects. Given the ever-growing number of objects to model, it is increasingly important to store the underlying graphs in a compact manner in order to facilitate designing efficient algorithmic solutions. One simple way to represent graphs is to consider them as random objects without any particular structure. There are two issues, however, with such general approach. First, many computational problems are NP-hard on general graphs and often remain hard to approximate. Second, random graphs are highly incompressible and cannot be stored compactly [1]. At the same time, graphs that arise in practice often have combinatorial structures that can -and should- be exploited to provide space-efficient representations. -
List of NP-Complete Problems from Wikipedia, the Free Encyclopedia
List of NP -complete problems - Wikipedia, the free encyclopedia Page 1 of 17 List of NP-complete problems From Wikipedia, the free encyclopedia Here are some of the more commonly known problems that are NP -complete when expressed as decision problems. This list is in no way comprehensive (there are more than 3000 known NP-complete problems). Most of the problems in this list are taken from Garey and Johnson's seminal book Computers and Intractability: A Guide to the Theory of NP-Completeness , and are here presented in the same order and organization. Contents ■ 1 Graph theory ■ 1.1 Covering and partitioning ■ 1.2 Subgraphs and supergraphs ■ 1.3 Vertex ordering ■ 1.4 Iso- and other morphisms ■ 1.5 Miscellaneous ■ 2 Network design ■ 2.1 Spanning trees ■ 2.2 Cuts and connectivity ■ 2.3 Routing problems ■ 2.4 Flow problems ■ 2.5 Miscellaneous ■ 2.6 Graph Drawing ■ 3 Sets and partitions ■ 3.1 Covering, hitting, and splitting ■ 3.2 Weighted set problems ■ 3.3 Set partitions ■ 4 Storage and retrieval ■ 4.1 Data storage ■ 4.2 Compression and representation ■ 4.3 Database problems ■ 5 Sequencing and scheduling ■ 5.1 Sequencing on one processor ■ 5.2 Multiprocessor scheduling ■ 5.3 Shop scheduling ■ 5.4 Miscellaneous ■ 6 Mathematical programming ■ 7 Algebra and number theory ■ 7.1 Divisibility problems ■ 7.2 Solvability of equations ■ 7.3 Miscellaneous ■ 8 Games and puzzles ■ 9 Logic ■ 9.1 Propositional logic ■ 9.2 Miscellaneous ■ 10 Automata and language theory ■ 10.1 Automata theory http://en.wikipedia.org/wiki/List_of_NP-complete_problems 12/1/2011 List of NP -complete problems - Wikipedia, the free encyclopedia Page 2 of 17 ■ 10.2 Formal languages ■ 11 Computational geometry ■ 12 Program optimization ■ 12.1 Code generation ■ 12.2 Programs and schemes ■ 13 Miscellaneous ■ 14 See also ■ 15 Notes ■ 16 References Graph theory Covering and partitioning ■ Vertex cover [1][2] ■ Dominating set, a.k.a. -
Branch-Depth: Generalizing Tree-Depth of Graphs
Branch-depth: Generalizing tree-depth of graphs ∗1 †‡23 34 Matt DeVos , O-joung Kwon , and Sang-il Oum† 1Department of Mathematics, Simon Fraser University, Burnaby, Canada 2Department of Mathematics, Incheon National University, Incheon, Korea 3Discrete Mathematics Group, Institute for Basic Science (IBS), Daejeon, Korea 4Department of Mathematical Sciences, KAIST, Daejeon, Korea [email protected], [email protected], [email protected] November 5, 2020 Abstract We present a concept called the branch-depth of a connectivity function, that generalizes the tree-depth of graphs. Then we prove two theorems showing that this concept aligns closely with the no- tions of tree-depth and shrub-depth of graphs as follows. For a graph G = (V, E) and a subset A of E we let λG(A) be the number of vertices incident with an edge in A and an edge in E A. For a subset X of V , \ let ρG(X) be the rank of the adjacency matrix between X and V X over the binary field. We prove that a class of graphs has bounded\ tree-depth if and only if the corresponding class of functions λG has arXiv:1903.11988v2 [math.CO] 4 Nov 2020 bounded branch-depth and similarly a class of graphs has bounded shrub-depth if and only if the corresponding class of functions ρG has bounded branch-depth, which we call the rank-depth of graphs. Furthermore we investigate various potential generalizations of tree- depth to matroids and prove that matroids representable over a fixed finite field having no large circuits are well-quasi-ordered by restriction. -
An Efficient Reachability Indexing Scheme for Large Directed Graphs
1 Path-Tree: An Efficient Reachability Indexing Scheme for Large Directed Graphs RUOMING JIN, Kent State University NING RUAN, Kent State University YANG XIANG, The Ohio State University HAIXUN WANG, Microsoft Research Asia Reachability query is one of the fundamental queries in graph database. The main idea behind answering reachability queries is to assign vertices with certain labels such that the reachability between any two vertices can be determined by the labeling information. Though several approaches have been proposed for building these reachability labels, it remains open issues on how to handle increasingly large number of vertices in real world graphs, and how to find the best tradeoff among the labeling size, the query answering time, and the construction time. In this paper, we introduce a novel graph structure, referred to as path- tree, to help labeling very large graphs. The path-tree cover is a spanning subgraph of G in a tree shape. We show path-tree can be generalized to chain-tree which theoretically can has smaller labeling cost. On top of path-tree and chain-tree index, we also introduce a new compression scheme which groups vertices with similar labels together to further reduce the labeling size. In addition, we also propose an efficient incremental update algorithm for dynamic index maintenance. Finally, we demonstrate both analytically and empirically the effectiveness and efficiency of our new approaches. Categories and Subject Descriptors: H.2.8 [Database management]: Database Applications—graph index- ing and querying General Terms: Performance Additional Key Words and Phrases: Graph indexing, reachability queries, transitive closure, path-tree cover, maximal directed spanning tree ACM Reference Format: Jin, R., Ruan, N., Xiang, Y., and Wang, H. -
Cop Number of Graphs Without Long Holes
Cop number of graphs without long holes Vaidy Sivaraman January 3, 2020 Abstract A hole in a graph is an induced cycle of length at least 4. We give a simple winning strategy for t − 3 cops to capture a robber in the game of cops and robbers played in a graph that does not contain a hole of length at least t. This strengthens a theorem of Joret-Kaminski-Theis, who proved that t − 2 cops have a winning strategy in such graphs. As a consequence of our bound, we also give an inequality relating the cop number and the Dilworth number of a graph. The game of cops and robbers is played on a finite simple graph G. There are k cops and a single robber. Each of the cops chooses a vertex to start, and then the robber chooses a vertex. And then they alternate turns starting with the cop. In the turn of cops, each cop either stays on the vertex or moves to a neighboring vertex. In the robber’s turn, he stays on the same vertex or moves to a neighboring vertex. The cops win if at any point in time, one of the cops lands on the robber. The robber wins if he can avoid being captured. The cop number of G, denoted c(G), is the minimum number of cops needed so that the cops have a winning strategy in G. The question of what makes a graph to have high cop number is not clearly understood. Some fundamental results were proved in [1] and [9]. -
Tree-Depth and the Formula Complexity of Subgraph Isomorphism
Electronic Colloquium on Computational Complexity, Report No. 61 (2020) Tree-depth and the Formula Complexity of Subgraph Isomorphism Deepanshu Kush Benjamin Rossman University of Toronto Duke University April 28, 2020 Abstract For a fixed \pattern" graph G, the colored G-subgraph isomorphism problem (denoted SUB(G)) asks, given an n-vertex graph H and a coloring V (H) ! V (G), whether H contains a properly colored copy of G. The complexity of this problem is tied to parameterized versions of P =? NP and L =? NL, among other questions. An overarching goal is to understand the complexity of SUB(G), under different computational models, in terms of natural invariants of the pattern graph G. In this paper, we establish a close relationship between the formula complexity of SUB(G) and an invariant known as tree-depth (denoted td(G)). SUB(G) is known to be solvable by monotone AC 0 1=3 formulas of size O(ntd(G)). Our main result is an nΩ(e td(G) ) lower bound for formulas that are monotone or have sub-logarithmic depth. This complements a lower bound of Li, Razborov and Rossman [8] relating tree-width and AC 0 circuit size. As a corollary, it implies a stronger homomorphism preservation theorem for first-order logic on finite structures [14]. The technical core of this result is an nΩ(k) lower bound in the special case where G is a complete binary tree of height k, which we establish using the pathset framework introduced in [15]. (The lower bound for general patterns follows via a recent excluded-minor characterization of tree-depth [4, 6].) Additional results of this paper extend the pathset framework and improve upon both, the best known upper and lower bounds on the average-case formula size of SUB(G) when G is a path. -
An Algorithm for the Exact Treedepth Problem James Trimble School of Computing Science, University of Glasgow Glasgow, Scotland, UK [email protected]
An Algorithm for the Exact Treedepth Problem James Trimble School of Computing Science, University of Glasgow Glasgow, Scotland, UK [email protected] Abstract We present a novel algorithm for the minimum-depth elimination tree problem, which is equivalent to the optimal treedepth decomposition problem. Our algorithm makes use of two cheaply-computed lower bound functions to prune the search tree, along with symmetry-breaking and domination rules. We present an empirical study showing that the algorithm outperforms the current state-of-the-art solver (which is based on a SAT encoding) by orders of magnitude on a range of graph classes. 2012 ACM Subject Classification Theory of computation → Graph algorithms analysis; Theory of computation → Algorithm design techniques Keywords and phrases Treedepth, Elimination Tree, Graph Algorithms Supplement Material Source code: https://github.com/jamestrimble/treedepth-solver Funding James Trimble: This work was supported by the Engineering and Physical Sciences Research Council (grant number EP/R513222/1). Acknowledgements Thanks to Ciaran McCreesh, David Manlove, Patrick Prosser and the anonymous referees for their helpful feedback, and to Robert Ganian, Neha Lodha, and Vaidyanathan Peruvemba Ramaswamy for providing software for the SAT encoding. 1 Introduction This paper presents a practical algorithm for finding an optimal treedepth decomposition of a graph. A treedepth decomposition of graph G = (V, E) is a rooted forest F with node set V , such that for each edge {u, v} ∈ E, we have either that u is an ancestor of v or v is an ancestor of u in F . The treedepth of G is the minimum depth of a treedepth decomposition of G, where depth is defined as the maximum number of vertices along a path from the root of the tree to a leaf. -
Tree-Depth and the Formula Complexity of Subgraph Isomorphism
2020 IEEE 61st Annual Symposium on Foundations of Computer Science (FOCS) Tree-depth and the Formula Complexity of Subgraph Isomorphism Deepanshu Kush Benjamin Rossman Department of Computer Science Department of Computer Science University of Toronto Duke University Toronto, Ontario, Canada Durham, North Carolina, USA Email: [email protected] Email: [email protected] Abstract—For a fixed “pattern” graph G, the colored in parameterized complexity. In particular, SUB(G) is SUB( ) 0 G-subgraph isomorphism problem (denoted G ) asks, equivalent (up to AC reductions) to the k-CLIQUE and given an -vertex graph and a coloring ( ) → ( ), n H V H V G DISTANCE-k CONNECTIVITY problems when G is a whether H contains a properly colored copy of G. The k complexity of this problem is tied to parameterized ver- clique or path of order . sions of P =? NP and L =? NL, among other questions. For any fixed pattern graph G, the problem SUB(G) An overarching goal is to understand the complexity of is solvable by brute-force search in polynomial time SUB(G), under different computational models, in terms O(n|V (G)|). Understanding the fine-grained complexity of natural invariants of the pattern graph G. of SUB(G) — in this context, we mean the exponent In this paper, we establish a close relationship between SUB( ) of n in the complexity of SUB(G) under various the formula complexity of G and an invariant known G as tree-depth (denoted td(G)). SUB(G) is known to be computational models — for general patterns is an 0 td(G) solvable by monotone AC formulas of size O(n ).