View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@University of Nebraska University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln U.S. Department of Agriculture: Agricultural Publications from USDA-ARS / UNL Faculty Research Service, Lincoln, Nebraska 2016 The Identification of Haemonchus Species and Diagnosis of Haemonchosis Dante Zarlenga E.P. Hoberg W. Tuo Follow this and additional works at: https://digitalcommons.unl.edu/usdaarsfacpub This Article is brought to you for free and open access by the U.S. Department of Agriculture: Agricultural Research Service, Lincoln, Nebraska at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications from USDA-ARS / UNL Faculty by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. CHAPTER FIVE The Identification of Haemonchus Species and Diagnosis of Haemonchosis D.S. Zarlenga1, E.P. Hoberg, W. Tuo USDA, Agricultural Research Service, Beltsville, MD, United States 1Corresponding author: E-mail:
[email protected] Contents 1. Introduction 146 2. Morphological Approaches for Identifying Haemonchus contortus 147 2.1 Morphology; the gold standard 147 2.1.1 Identification of adult worms 148 2.1.2 Identification of infective third-stage larvae 150 2.1.3 Identification of parasitic fourth-stage larvae 152 2.1.4 Identification of eggs 152 3. Molecular Methods for Identifying Haemonchus 155 3.1 Haemonchus contortus, Haemonchus placei or both? 155 3.2 Traditional PCR 157 3.3 Real-time PCR 159 3.4 The next generation 162 3.4.1 Loop-mediated isothermal amplification 162 3.4.2 Metagenomics and pyrosequencing 163 4.