A method for phylogenetic reconstruction of aneuploid cancers based on multiregional genotyping data Natalie Andersson (
[email protected] ) Lund University https://orcid.org/0000-0002-3643-4404 Subhayan Chattopadhyay Lund University Anders Valind Lund University Jenny Karlsson Lund University David Gisselsson Lund University https://orcid.org/0000-0002-0301-426X Article Keywords: tumor heterogeneity, pediatric cancer, phylogenetic reconstruction Posted Date: January 22nd, 2021 DOI: https://doi.org/10.21203/rs.3.rs-140537/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License A method for phylogenetic reconstruction of aneuploid cancers based on multiregional genotyping data Natalie Andersson1, Subhayan Chattopadhyay1, Anders Valind1,2, Jenny Karlsson1 & David Gisselsson1,3,4 1Division of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden. 2Department of Pediatrics, Skåne University Hospital, Lund, Sweden. 3Division of Oncology-Pathology, Department of Clinical Sciences, Lund University, Lund, Sweden. 4Clinical Genetics and Pathology, Laboratory Medicine, Lund University Hospital, Skåne Healthcare Region. Correspondence and request for materials should be addressed to N.A. (email:
[email protected]). Abstract word count: 129 Text word count: 6563 References: 37 Figures: 4 Tables: 1 Supplementary Figures: 7 Supplementary Datasets: 17 1 1 Abstract 2 Phylogenetic reconstruction of cancer cell populations remains challenging. There is a particular lack of 3 tools that deconvolve clones based on copy number aberration analyses of multiple tumor biopsies 4 separated in time and space from the same patient. This has hampered investigations of tumors rich in 5 aneuploidy but few point mutations, as in many childhood cancers.