Different Regulation of PARP1, PARP2, PARP3 and TRPM2 Genes Expression in Acute Myeloid Leukemia Cells

Total Page:16

File Type:pdf, Size:1020Kb

Different Regulation of PARP1, PARP2, PARP3 and TRPM2 Genes Expression in Acute Myeloid Leukemia Cells Gil-Kulik et al. BMC Cancer (2020) 20:435 https://doi.org/10.1186/s12885-020-06903-4 RESEARCH ARTICLE Open Access Different regulation of PARP1, PARP2, PARP3 and TRPM2 genes expression in acute myeloid leukemia cells Paulina Gil-Kulik1* , Ewa Dudzińska2,Elżbieta Radzikowska-Büchner3, Joanna Wawer1, Mariusz Jojczuk4, Adam Nogalski4, Genowefa Anna Wawer5, Marcin Feldo6, Wojciech Kocki7, Maria Cioch8†, Anna Bogucka-Kocka9†, Mansur Rahnama10† and Janusz Kocki1† Abstract Background: Acute myeloid leukemia (AML) is a heterogenic lethal disorder characterized by the accumulation of abnormal myeloid progenitor cells in the bone marrow which results in hematopoietic failure. Despite various efforts in detection and treatment, many patients with AML die of this cancer. That is why it is important to develop novel therapeutic options, employing strategic target genes involved in apoptosis and tumor progression. Methods: The aim of the study was to evaluate PARP1, PARP2, PARP3, and TRPM2 gene expression at mRNA level using qPCR method in the cells of hematopoietic system of the bone marrow in patients with acute myeloid leukemia, bone marrow collected from healthy patients, peripheral blood of healthy individuals, and hematopoietic stem cells from the peripheral blood after mobilization. Results: The results found that the bone marrow cells of the patients with acute myeloid leukemia (AML) show overexpression of PARP1 and PARP2 genes and decreased TRPM2 gene expression. In the hematopoietic stem cells derived from the normal marrow and peripheral blood after mobilization, the opposite situation was observed, i.e. TRPM2 gene showed increased expression while PARP1 and PARP2 gene expression was reduced. We observed positive correlations between PARP1, PARP2, PARP3, and TRPM2 genes expression in the group of mature mononuclear cells derived from the peripheral blood and in the group of bone marrow-derived cells. In AML cells significant correlations were not observed between the expression of the examined genes. In addition, we observed that the reduced expression of TRPM2 and overexpression of PARP1 are associated with a shorter overall survival of patients, indicating the prognostic significance of these genes expression in AML. Conclusions: Our research suggests that in physiological conditions in the cells of the hematopoietic system there is mutual positive regulation of PARP1, PARP2, PARP3, and TRPM2 genes expression. PARP1, PARP2, and TRPM2 genes at mRNA level deregulate in acute myeloid leukemia cells. Keywords: PARP1, PARP2, PARP3, TRPM2 gene expression, AML, Hematopoietic stem cells * Correspondence: [email protected] Maria Cioch, Anna Bogucka-Kocka, Mansur Rahnama and Janusz Kocki all four authors have equal senior position in authorship 1Department of Clinical Genetics, Medical University of Lublin, 11 Radziwillowska Str, 20-080 Lublin, Poland Full list of author information is available at the end of the article © The Author(s). 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. Gil-Kulik et al. BMC Cancer (2020) 20:435 Page 2 of 9 Background proven to be associated with the proliferation and sur- Acute myeloid leukemia (AML) is a heterogenic lethal vival of cells. Among TRP channels, TRPM2 is expressed disorder characterized by the accumulation of abnormal in many noncancerous cells, such as the brain and per- myeloid progenitor cells in the bone marrow which ipheral blood cells. Studies show that TRPM2 is associ- results in hematopoietic failure. A major contributing ated with various types of cancers, too [19]. factor to the high mortality rate associated with acute TRPM2 is a member of the TRP protein superfamily myeloid leukemia is developing resistance to chemother- of ion channels that can be activated by ADP-ribose, β- apy [1]. Despite various efforts in detection and treat- NAD, TNF-α, and H2O2 which results in increased ment, many patients with AML die of this cancer [1]. values of intracellular free calcium concentration ([Ca 2+ 2+_ Therefore it is important to develop novel therapeutic ]i)[20]. TRPM2 is a non-selective cationic, Ca per- options, employing strategic target genes involved in meable pore, and contains a unique C-terminal region apoptosis and tumor progression [2]. exhibiting ADP-ribose (ADPR) hydrolase activity. The Polymerases poly (ADP-ribose) PARP is a family of highest expression levels of TRPM2 are observed in the seventeen proteins that react with poly or mono ADP- cells of neuronal origin and in the myeloid lineage [21]. ribosylation, and are involved in numerous cellular pro- Data suggest that TRPM2 channels function as ‘death cesses such as DNA repair, cell death, transcription, channels’, because as a matter of fact, heterologous ex- translation, cell proliferation, or cell response to oxida- pression of TRPM2 in human embryonic kidney cells or tive stress. PARPs have the ability to modulate the tran- A172 human glioblastoma cells facilitates oxidative scriptional functions of both tumor suppressors and stress-induced cell death. Furthermore, expression of oncogenes which affects the ability of PARP to elicit TRPM2 has been demonstrated in several tumors such contextual proton and antineoplastic effects [3]. as hepatocellular carcinoma, prostate cancer, lymphoma, PARP1, PARP2, and PARP3 are involved in the repair leukemia, and lung cancer cell lines in which TRPM2 of DNA damage. Hence, it is recommended to use PARP reportedly may foster cell death [22]. TRPM2 is one ion inhibitors (PARPi) in the treatment of tumors, in par- channel that can be altered to increase apoptosis in ticular those that do not have the ability to recombine cancer cells [23]. (homologous recombination - HR) due to the mutations The aim of the study was to evaluate of PARP1, causing loss of BRCA1 or BRCA2 function. This PARP2, PARP3 and TRPM2 gene expression at mRNA phenomenon is referred to as synthetic lethality [4–6]. level in the cells of the hematopoietic system of the bone In many types of tumors, elevated PARP1 mRNA is as- marrow in patients with acute myeloid leukemia, bone sociated with poor prognosis and thus a shorter survival marrow from healthy patients, peripheral blood of time. Increased expression of PARP1 has been demon- healthy individuals, and hematopoietic stem cells from strated in various types of tumors, including breast can- the peripheral blood after mobilization. cer, soft tissue sarcomas, endometrial adenocarcinoma, gliomas, colorectal cancer, myelodysplastic syndrome, Methods neuroma, malignant lymphoma, testicular cancer, ovar- The study comprised a group of 84 patients. The study ian cancer [7–11]. PARP1 was also found in acute group consisted of 53 patients hospitalized at the myeloid leukemia and is suggested to be an independent Department and Clinic of Hematooncology with Bone prognostic factor in AML [9, 10]. Marrow Transplantation, Medical University of Lublin, Hyperactivation of PARP pathway observed in tumors Poland, among them 14 patients with acute myeloid can be used to selectively kill tumor cells. PARPi treat- leukemia - samples of bone marrow were examined, and ment was shown to be effective in monotherapy and in 39 patients in remission stage who had previously combination therapies mainly in gynecological cancers, suffered from hematologic illnesses - samples of and researchers also suspect potential of PARP inhibi- hematopoietic stem cells from the peripheral blood tors involvement in acute myeloid leukemia [9, 12, 13]. which underwent mobilization were tested, 10 patients Recent studies show that PARP may also be involved of the Chair and Clinic of Traumatic Surgery and Emer- in the epigenetic regulation maintaining stem cell pluri- gency Medicine, Medical University of Lublin. The pa- potency, and their expression is probably necessary for tients had normal bone marrow sampled during hip the proper differentiation of stem cells, including replacement surgery, and 21 healthy volunteers from hematopoietic stem cells. Some authors even suggest whom peripheral blood was collected. The study groups that PARP can be used to reprogram somatic stem cells were similar in terms of age and gender. towards induced pluripotent stem cell (iPSC) [14–18]. The material from patients with acute myeloid Transient receptor potential (TRP) channels are cation leukemia was collected at the time of diagnosis, before channels associated with cancer. To date, TRPM mem- the treatment was initiated. The AML group consisted bers including TRPM2, 4, 5, 7 and 8 have also been of 7 women and 7 men,
Recommended publications
  • PARP-3 (B-7): Sc-390771
    SANTA CRUZ BIOTECHNOLOGY, INC. PARP-3 (B-7): sc-390771 BACKGROUND RECOMMENDED SUPPORT REAGENTS Poly(ADP-ribose) polymerase-3 (PARP-3) is part of the base excision repair To ensure optimal results, the following support reagents are recommended: (BER) pathway, catalyzing the poly(ADP-ribosyl)ation of nuclear proteins. 1) Western Blotting: use m-IgGk BP-HRP: sc-516102 or m-IgGk BP-HRP (Cruz Poly(ADP-ribosyl)ation, a post-translational modification following DNA Marker): sc-516102-CM (dilution range: 1:1000-1:10000), Cruz Marker™ damage, appears as an obligatory step in a detection/signaling pathway Molecular Weight Standards: sc-2035, UltraCruz® Blocking Reagent: leading to the reparation of DNA strand breaks. PARP-3 is a nuclear, DNA- sc-516214 and Western Blotting Luminol Reagent: sc-2048. 2) Immunopre- binding protein, which interacts with PARP-1. PARP-3 is present in actively cipitation: use Protein A/G PLUS-Agarose: sc-2003 (0.5 ml agarose/2.0 ml). dividing tissues with highest levels in the kidney, skeletal muscle, liver, heart 3) Immunofluorescence: use m-IgGk BP-FITC: sc-516140 or m-IgGk BP-PE: and spleen. Human PARP-3 maps to chromosome 3p21.2, a gene region that sc-516141 (dilution range: 1:50-1:200) with UltraCruz® Mounting Medium: undergoes alteration in solid malignant tumors. sc-24941 or UltraCruz® Hard-set Mounting Medium: sc-359850. CHROMOSOMAL LOCATION DATA Genetic locus: PARP3 (human) mapping to 3p21.2; Parp3 (mouse) mapping to 9 F1. AB 132 K – < PARP-3 90 K – 50 K – SOURCE < PARP-3 55 K – PARP-3 (B-7) is a mouse monoclonal antibody raised against amino acids 43 K – 139-219 mapping within an internal region of PARP-3 of human origin.
    [Show full text]
  • The PARP Enzyme Family and the Hallmarks of Cancer Part 1. Cell Intrinsic Hallmarks
    cancers Review The PARP Enzyme Family and the Hallmarks of Cancer Part 1. Cell Intrinsic Hallmarks Máté A. Demény 1,2,* and László Virág 1,2,* 1 Department of Medical Chemistry, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary 2 MTA-DE Cell Biology and Signaling Research Group, University of Debrecen, 4032 Debrecen, Hungary * Correspondence: [email protected] (M.A.D.); [email protected] (L.V.) Simple Summary: Poly (ADP-ribose) polymerase (PARP) proteins regulate DNA damage correction, replication, and gene transcription. By controlling pivotal aspects of these processes, PARPs are heavily implicated in cancer development. Inhibitors of PARPs, approved for cancer chemotherapy a few years ago, have achieved great success against tumors of the breast and ovary carrying mutations in the BRCA1/2 genes. The spectrum of the inhibitors is avidly sought to be extended to tumors with different genetic backgrounds and cancers of other origins. This pursuit requires thorough apprehension of PARP-dependent processes affecting cancer development. The hallmarks of cancer are acquired by defining capabilities that differentiate cancer cells from their normal counterparts. Here, in two joint papers, we walk through the connections between these cancer traits and PARP functions. The present review focuses on how PARPs affect the features of cancer that can be attributed to cell-intrinsic changes increasing proliferative potential and survival capabilities. In a kindred paper, we explore the PARP association of cancer hallmarks that derive from tissue-level reorganization in tumors and intercellular interactions of cancer cells. Citation: Demény, M.A.; Virág, L. Abstract: The 17-member poly (ADP-ribose) polymerase enzyme family, also known as the ADP- The PARP Enzyme Family and the ribosyl transferase diphtheria toxin-like (ARTD) enzyme family, contains DNA damage-responsive Hallmarks of Cancer Part 1.
    [Show full text]
  • Parps and ADP-Ribosylation: Recent Advances Linking Molecular Functions to Biological Outcomes
    Downloaded from genesdev.cshlp.org on September 27, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW PARPs and ADP-ribosylation: recent advances linking molecular functions to biological outcomes Rebecca Gupte,1,2 Ziying Liu,1,2 and W. Lee Kraus1,2 1Laboratory of Signaling and Gene Regulation, Cecil H. and Ida Green Center for Reproductive Biology Sciences, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA; 2Division of Basic Research, Department of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA The discovery of poly(ADP-ribose) >50 years ago opened units derived from β-NAD+ to catalyze the ADP-ribosyla- a new field, leading the way for the discovery of the tion reaction. These enzymes include bacterial ADPRTs poly(ADP-ribose) polymerase (PARP) family of enzymes (e.g., cholera toxin and diphtheria toxin) as well as mem- and the ADP-ribosylation reactions that they catalyze. bers of three different protein families in yeast and ani- Although the field was initially focused primarily on the mals: (1) arginine-specific ecto-enzymes (ARTCs), (2) biochemistry and molecular biology of PARP-1 in DNA sirtuins, and (3) PAR polymerases (PARPs) (Hottiger damage detection and repair, the mechanistic and func- et al. 2010). Surprisingly, a recent study showed that the tional understanding of the role of PARPs in different bio- bacterial toxin DarTG can ADP-ribosylate DNA (Jankevi- logical processes has grown considerably of late. This has cius et al. 2016). How this fits into the broader picture of been accompanied by a shift of focus from enzymology to cellular ADP-ribosylation has yet to be determined.
    [Show full text]
  • SUPPLEMENTARY MATERIAL Supplementary Fig. S1. LD Mice Used in This Study Accumulate Polyglucosan Inclusions (Lafora Bodies) in the Brain
    1 SUPPLEMENTARY MATERIAL Supplementary Fig. S1. LD mice used in this study accumulate polyglucosan inclusions (Lafora bodies) in the brain. Samples from the hippocampus of five months old control, Epm2a-/- (lacking laforin) and Epm2b-/- mice (lacking malin) were stained with periodic acid Schiff reagent (PAS staining), which colors polysaccharide granules in red. Bar: 50 m. Supplementary Fig. S2. Principal component analysis (PCA) representing the first two components with the biggest level of phenotypic variability. Samples 1_S1 to 4_S4 corresponded to control, 5_S5, 6_S6 and 8_S8 to Epm2a-/- and 9_S9 to 12_S12 to Epm2b- /- samples, of animals of 16 months of age respectively. Supplementary Table S1. Primers used in this work to validate the expression of the corresponding genes by RT-qPCR. Supplementary Table S2: Genes downregulated more than 0.5 fold in Epm2a-/- and Epm2b-/- mice of 16 months of age. The gene name, false discovery rate (FDR), fold change (FC), description and MGI Id (mouse genome informatics) are indicated. Genes are arranged according to FC. Supplementary Table S3: Genes upregulated more than 1.5 fold in Epm2a-/- mice of 16 months of age. The gene name, false discovery rate (FDR), fold change (FC), description and MGI Id (mouse genome informatics) are indicated. Genes are arranged according to FC. Supplementary Table S4: Genes upregulated more than 1.5 fold in Epm2b-/- mice of 16 months of age. The gene name, false discovery rate (FDR), fold change (FC), description and MGI Id (mouse genome informatics) are indicated. Genes are arranged according to FC. 2 Supplementary Table S5: Genes upregulated in both Epm2a-/- and Epm2b-/- mice of 16 months of age.
    [Show full text]
  • Dna Is a New Target of Parp3 E
    www.nature.com/scientificreports OPEN Dna is a New Target of Parp3 E. A. Belousova1, А. A. Ishchenko2,3 & O. I. Lavrik1,4 Most members of the poly(ADP-ribose)polymerase family, PARP family, have a catalytic activity that involves the transfer of ADP-ribose from a beta-NAD+-molecule to protein acceptors. It was recently discovered by Talhaoui et al. that DNA-dependent PARP1 and PARP2 can also modify DNA. Here, we Received: 3 November 2017 demonstrate that DNA-dependent PARP3 can modify DNA and form a specifc primed structure for further use by the repair proteins. We demonstrated that gapped DNA that was ADP-ribosylated by Accepted: 27 February 2018 PARP3 could be ligated to double-stranded DNA by DNA ligases. Moreover, this ADP-ribosylated DNA Published: xx xx xxxx could serve as a primed DNA substrate for PAR chain elongation by the purifed proteins PARP1 and PARP2 as well as by cell-free extracts. We suggest that this ADP-ribose modifcation can be involved in cellular pathways that are important for cell survival in the process of double-strand break formation. Poly(ADP-ribose)polymerases, PARPs, represent a protein family that is involved in a number of crucial cellular processes that are linked to genomic DNA integrity such as DNA repair, genome stability, and cellular stress responses1. Te entire human family includes 17 members with very diferent structures and cellular functions but that are related by the presence of the PARP signature, a conserved PARP catalytic domain2. Most members of the family perform the catalytic activity of transferring ADP-ribose from the beta-NAD+-molecule to the accep- tors; however, only three of them, PARP1, PARP2 and PARP3, possess DNA-dependent (ADP-ribose)transferase activity1.
    [Show full text]
  • Predicted Coronavirus Nsp5 Protease Cleavage Sites in The
    bioRxiv preprint doi: https://doi.org/10.1101/2021.06.08.447224; this version posted June 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Predicted Coronavirus Nsp5 Protease Cleavage Sites in the 2 Human Proteome: A Resource for SARS-CoV-2 Research 3 Benjamin M. Scott1,2*, Vincent Lacasse3, Ditte G. Blom4, Peter D. Tonner5, Nikolaj S. Blom6 4 1 Associate, Biosystems and Biomaterials Division, National Institute of Standards and Technology, 5 Gaithersburg, Maryland, USA. 6 2 Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, USA. 7 3 Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, 8 Quebec, Canada 9 4 Department of Applied Mathematics and Computer Science, Technical University of Denmark, Lyngby, 10 Denmark. 11 5 Statistical Engineering Division, National Institute of Standards and Technology, Gaithersburg, Maryland, USA 12 6 Department of Bioengineering, Kongens Lyngby, Technical University of Denmark 13 14 *Corresponding author, [email protected] 15 16 BMS current affiliation: Concordia University, Centre for Applied Synthetic Biology, Montreal, Quebec, Canada 17 18 19 Abstract 20 Background: The coronavirus nonstructural protein 5 (Nsp5) is a cysteine protease required for 21 processing the viral polyprotein and is therefore crucial for viral replication. Nsp5 from several 22 coronaviruses have also been found to cleave host proteins, disrupting molecular pathways 23 involved in innate immunity. Nsp5 from the recently emerged SARS-CoV-2 virus interacts with 24 and can cleave human proteins, which may be relevant to the pathogenesis of COVID-19.
    [Show full text]
  • CREB-Dependent Transcription in Astrocytes: Signalling Pathways, Gene Profiles and Neuroprotective Role in Brain Injury
    CREB-dependent transcription in astrocytes: signalling pathways, gene profiles and neuroprotective role in brain injury. Tesis doctoral Luis Pardo Fernández Bellaterra, Septiembre 2015 Instituto de Neurociencias Departamento de Bioquímica i Biologia Molecular Unidad de Bioquímica y Biologia Molecular Facultad de Medicina CREB-dependent transcription in astrocytes: signalling pathways, gene profiles and neuroprotective role in brain injury. Memoria del trabajo experimental para optar al grado de doctor, correspondiente al Programa de Doctorado en Neurociencias del Instituto de Neurociencias de la Universidad Autónoma de Barcelona, llevado a cabo por Luis Pardo Fernández bajo la dirección de la Dra. Elena Galea Rodríguez de Velasco y la Dra. Roser Masgrau Juanola, en el Instituto de Neurociencias de la Universidad Autónoma de Barcelona. Doctorando Directoras de tesis Luis Pardo Fernández Dra. Elena Galea Dra. Roser Masgrau In memoriam María Dolores Álvarez Durán Abuela, eres la culpable de que haya decidido recorrer el camino de la ciencia. Que estas líneas ayuden a conservar tu recuerdo. A mis padres y hermanos, A Meri INDEX I Summary 1 II Introduction 3 1 Astrocytes: physiology and pathology 5 1.1 Anatomical organization 6 1.2 Origins and heterogeneity 6 1.3 Astrocyte functions 8 1.3.1 Developmental functions 8 1.3.2 Neurovascular functions 9 1.3.3 Metabolic support 11 1.3.4 Homeostatic functions 13 1.3.5 Antioxidant functions 15 1.3.6 Signalling functions 15 1.4 Astrocytes in brain pathology 20 1.5 Reactive astrogliosis 22 2 The transcription
    [Show full text]
  • Worldwide Genetic Structure in 37 Genes Important in Telomere Biology
    Heredity (2012) 108, 124–133 & 2012 Macmillan Publishers Limited All rights reserved 0018-067X/12 www.nature.com/hdy ORIGINAL ARTICLE Worldwide genetic structure in 37 genes important in telomere biology L Mirabello1, M Yeager2, S Chowdhury2,LQi2, X Deng2, Z Wang2, A Hutchinson2 and SA Savage1 1Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, MD, USA and 2Core Genotyping Facility, National Cancer Institute, Division of Cancer Epidemiology and Genetics, SAIC-Frederick, Inc., NCI-Frederick, Frederick, MD, USA Telomeres form the ends of eukaryotic chromosomes and and differentiation were significantly lower in telomere are vital in maintaining genetic integrity. Telomere dysfunc- biology genes compared with the innate immunity genes. tion is associated with cancer and several chronic diseases. There was evidence of evolutionary selection in ACD, Patterns of genetic variation across individuals can provide TERF2IP, NOLA2, POT1 and TNKS in this data set, which keys to further understanding the evolutionary history of was consistent in HapMap 3. TERT had higher than genes. We investigated patterns of differentiation and expected levels of haplotype diversity, likely attributable to population structure of 37 telomere maintenance genes a lack of linkage disequilibrium, and a potential cancer- among 53 worldwide populations. Data from 898 unrelated associated SNP in this gene, rs2736100, varied substantially individuals were obtained from the genome-wide scan of the in genotype frequency across major continental regions. It is Human Genome Diversity Panel (HGDP) and from 270 possible that the genes under selection could influence unrelated individuals from the International HapMap Project telomere biology diseases.
    [Show full text]
  • Targeting Deparylation for Cancer Therapy Muzafer Ahmad Kassab1, Lily L
    Kassab et al. Cell Biosci (2020) 10:7 https://doi.org/10.1186/s13578-020-0375-y Cell & Bioscience REVIEW Open Access Targeting dePARylation for cancer therapy Muzafer Ahmad Kassab1, Lily L. Yu2 and Xiaochun Yu1* Abstract Poly(ADP-ribosyl)ation (PARylation) mediated by poly ADP-ribose polymerases (PARPs) plays a key role in DNA damage repair. Suppression of PARylation by PARP inhibitors impairs DNA damage repair and induces apoptosis of tumor cells with repair defects. Thus, PARP inhibitors have been approved by the US FDA for various types of cancer treatment. However, recent studies suggest that dePARylation also plays a key role in DNA damage repair. Instead of antagoniz- ing PARylation, dePARylation acts as a downstream step of PARylation in DNA damage repair. Moreover, several types of dePARylation inhibitors have been developed and examined in the preclinical studies for cancer treatment. In this review, we will discuss the recent progress on the role of dePARylation in DNA damage repair and cancer suppression. We expect that targeting dePARylation could be a promising approach for cancer chemotherapy in the future. Keywords: PARG , ADP-ribosylation, dePARylation, DNA damage response, Cancer therapy Overview donor and generating nicotinamide as a byproduct. DePARylation is the process that removes ADP-ribose PARylation modulates the function and structure of the (ADPR) signals from various proteins during cellular modifed proteins. Te modifed proteins, in turn, recruit stresses conditions such as DNA damage response (DDR) additional proteins involved in DDR to the damaged [1]. During DDR, ADPR moieties are attached to the sub- loci [2, 9]. PARylation is a reversible modifcation, and strate proteins by various poly(ADP-ribose) polymerases consequently, this modifcation is terminated and cellu- (PARPs) with PARP1 and PARP2 catalyzing the predomi- lar homeostasis is attained.
    [Show full text]
  • Insights Into the Binding of PARP Inhibitors to the Catalytic Domain of Human Tankyrase-2
    research papers Acta Crystallographica Section D Biological Insights into the binding of PARP inhibitors to the Crystallography catalytic domain of human tankyrase-2 ISSN 1399-0047 Wei Qiu,a Robert Lam,a The poly(ADP-ribose) polymerase (PARP) family represents Received 21 May 2014 Oleksandr Voytyuk,a Vladimir a new class of therapeutic targets with diverse potential Accepted 31 July 2014 Romanov,a Roni Gordon,a Simon disease indications. PARP1 and PARP2 inhibitors have been a Gebremeskel, Jakub developed for breast and ovarian tumors manifesting double- PDB references: TNKS2– Vodsedalek,a Christine stranded DNA-repair defects, whereas tankyrase 1 and 2 EB-47, 4tk5; TNKS2– a a (TNKS1 and TNKS2, also known as PARP5a and PARP5b, DR-2313, 4pnl; TNKS2– Thompson, Irina Beletskaya, 3,4-CPQ-5-C, 4tju; TNKS2– b a,c respectively) inhibitors have been developed for tumors Kevin P. Battaile, Emil F. Pai, BSI-201, 4tki; TNKS2–TIQ-A, with elevated -catenin activity. As the clinical relevance of Robert Rottapela,d,e* and 4pnr; TNKS2–5-AIQ, 4pnq; PARP inhibitors continues to be actively explored, there is Nickolay Y. Chirgadzea* TNKS2–4-HQN, 4pnn; heightened interest in the design of selective inhibitors based TNKS2–3-AB, 4pml; TNKS2– on the detailed structural features of how small-molecule AZD-2281, 4tkg; TNKS2– NU-1025, 4pnm; TNKS2– aPrincess Margaret Cancer Center, University inhibitors bind to each of the PARP family members. Here, PJ-34, 4tjw; TNKS2–INH2BP, Health Network, Toronto, Ontario, Canada, the high-resolution crystal structures of the human TNKS2 4pns; TNKS2–DPQ, 4tk0; bHauptman–Woodward Medical Research PARP domain in complex with 16 various PARP inhibitors are TNKS2–ABT-888, 4tjy; Institute, IMCA-CAT, Advanced Photon Source, reported, including the compounds BSI-201, AZD-2281 and TNKS2–IWR-1, 4tkf; TNKS2– Argonne National Laboratory, Argonne, Illinois 1,5-IQD, 4pnt USA, cDepartments of Biochemistry, Molecular ABT-888, which are currently in Phase 2 or 3 clinical trials.
    [Show full text]
  • PARP1 and PARP2 Stabilise Replication Forks at Base Excision Repair Intermediates Through Fbh1-Dependent Rad51 Regulation', Nature Communications, Vol
    University of Birmingham PARP1 and PARP2 stabilise replication forks at base excision repair intermediates through Fbh1- dependent Rad51 regulation Ronson, George; Piberger, Ann Liza; Higgs, Martin; Olsen, Anna; Stewart, Grant; McHugh, Peter; Petermann, Eva; Lakin, Nicholas DOI: 10.1038/s41467-018-03159-2 License: Creative Commons: Attribution (CC BY) Document Version Publisher's PDF, also known as Version of record Citation for published version (Harvard): Ronson, G, Piberger, AL, Higgs, M, Olsen, A, Stewart, G, McHugh, P, Petermann, E & Lakin, N 2018, 'PARP1 and PARP2 stabilise replication forks at base excision repair intermediates through Fbh1-dependent Rad51 regulation', Nature Communications, vol. 9, no. 1, 746. https://doi.org/10.1038/s41467-018-03159-2 Link to publication on Research at Birmingham portal General rights Unless a licence is specified above, all rights (including copyright and moral rights) in this document are retained by the authors and/or the copyright holders. The express permission of the copyright holder must be obtained for any use of this material other than for purposes permitted by law. •Users may freely distribute the URL that is used to identify this publication. •Users may download and/or print one copy of the publication from the University of Birmingham research portal for the purpose of private study or non-commercial research. •User may use extracts from the document in line with the concept of ‘fair dealing’ under the Copyright, Designs and Patents Act 1988 (?) •Users may not further distribute the material nor use it for the purposes of commercial gain. Where a licence is displayed above, please note the terms and conditions of the licence govern your use of this document.
    [Show full text]
  • Trapping of PARP1 and PARP2 by Clinical PARP Inhibitors. Cancer
    Cancer Therapeutics, Targets, and Chemical Biology Research Trapping of PARP1 and PARP2 by Clinical PARP Inhibitors Junko Murai1,4, Shar-yin N. Huang1, Benu Brata Das1, Amelie Renaud1, Yiping Zhang2, James H. Doroshow1,3, Jiuping Ji2, Shunichi Takeda4, and Yves Pommier1 Abstract Small-molecule inhibitors of PARP are thought to mediate their antitumor effects as catalytic inhibitors that block repair of DNA single-strand breaks (SSB). However, the mechanism of action of PARP inhibi- tors with regard to their effects in cancer cells is not fully understood. In this study, we show that PARP inhibitors trap the PARP1 and PARP2 enzymes at damaged DNA. Trapped PARP–DNA complexes were more cytotoxic than unrepaired SSBs caused by PARP inactivation, arguing that PARP inhibitors act in part as poisons that trap PARP enzyme on DNA. Moreover, the potency in trapping PARP differed markedly among inhibitors with niraparib (MK-4827) > olaparib (AZD-2281) >> veliparib (ABT-888), a pattern not correlated with the catalytic inhibitory properties for each drug. We also analyzed repair pathways for PARP–DNA complexes using 30 genetically altered avian DT40 cell lines with preestablished deletions in specificDNA repair genes. This analysis revealed that, in addition to homologous recombination, postreplication repair, the Fanconi anemia pathway, polymerase b, and FEN1 are critical for repairing trapped PARP–DNA complexes. In summary, our study provides a new mechanistic foundation for the rational application of PARP inhibitors in cancer therapy. Cancer Res; 72(21); 5588–99. Ó2012 AACR. Introduction of PAR polymers, extensive autoPARylation of PARP1 and PARP1 is an abundant nuclear protein and the founding PARP2 leads to their dissociation from DNA, which is member of the PARP family (1–4).
    [Show full text]