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ADAM10 Site-Dependent Biology: Keeping Control of a Pervasive Protease
International Journal of Molecular Sciences Review ADAM10 Site-Dependent Biology: Keeping Control of a Pervasive Protease Francesca Tosetti 1,* , Massimo Alessio 2, Alessandro Poggi 1,† and Maria Raffaella Zocchi 3,† 1 Molecular Oncology and Angiogenesis Unit, IRCCS Ospedale Policlinico S. Martino Largo R. Benzi 10, 16132 Genoa, Italy; [email protected] 2 Proteome Biochemistry, IRCCS San Raffaele Scientific Institute, 20132 Milan, Italy; [email protected] 3 Division of Immunology, Transplants and Infectious Diseases, IRCCS San Raffaele Scientific Institute, 20132 Milan, Italy; [email protected] * Correspondence: [email protected] † These authors contributed equally to this work as last author. Abstract: Enzymes, once considered static molecular machines acting in defined spatial patterns and sites of action, move to different intra- and extracellular locations, changing their function. This topological regulation revealed a close cross-talk between proteases and signaling events involving post-translational modifications, membrane tyrosine kinase receptors and G-protein coupled recep- tors, motor proteins shuttling cargos in intracellular vesicles, and small-molecule messengers. Here, we highlight recent advances in our knowledge of regulation and function of A Disintegrin And Metalloproteinase (ADAM) endopeptidases at specific subcellular sites, or in multimolecular com- plexes, with a special focus on ADAM10, and tumor necrosis factor-α convertase (TACE/ADAM17), since these two enzymes belong to the same family, share selected substrates and bioactivity. We will discuss some examples of ADAM10 activity modulated by changing partners and subcellular compartmentalization, with the underlying hypothesis that restraining protease activity by spatial Citation: Tosetti, F.; Alessio, M.; segregation is a complex and powerful regulatory tool. -
Role and Regulation of the Metalloproteinase ADAM8 in Liver Inflammation and Hepatocellular Carcinoma
Role and Regulation of the Metalloproteinase ADAM8 in Liver Inflammation and Hepatocellular Carcinoma Von der Fakultät für Mathematik, Informatik und Naturwissenschaften der RWTH Aachen University zur Erlangung des akademischen Grades einer Doktorin der Naturwissenschaften genehmigte Dissertation vorgelegt von Tanzeela Awan M. Phil Pharmacology aus Layyah, Pakistan Berichter: Herr Universitätsprofessor Dr. rer. nat. Andreas Ludwig Frau Universitätsprofessorin Dr. phil. nat. Gabriele Pradel Herr Universitätsprofessor Dr. rer. nat. Martin Zenke Tag der mündlichen Prüfung: 11.01.2021 Diese Dissertation ist auf den Internetseiten der Universitätsbibliothek online verfügbar. Table of Contents Table of Contents 1 Introduction .......................................................................................... 1 1.1 The Liver .............................................................................................. 1 1.1.1 Cells of the liver ................................................................................... 1 1.1.2 Liver inflammation ............................................................................... 3 1.1.3 Liver carcinoma .................................................................................... 6 1.1.4 Integrin and focal adhesion kinase signalling ...................................... 7 1.2 Metalloproteinases ................................................................................ 9 1.2.1 ADAM proteases: structure and functions of different domains ....... 10 1.3 ADAM8 ............................................................................................. -
Gene Symbol Category ACAN ECM ADAM10 ECM Remodeling-Related ADAM11 ECM Remodeling-Related ADAM12 ECM Remodeling-Related ADAM15 E
Supplementary Material (ESI) for Integrative Biology This journal is (c) The Royal Society of Chemistry 2010 Gene symbol Category ACAN ECM ADAM10 ECM remodeling-related ADAM11 ECM remodeling-related ADAM12 ECM remodeling-related ADAM15 ECM remodeling-related ADAM17 ECM remodeling-related ADAM18 ECM remodeling-related ADAM19 ECM remodeling-related ADAM2 ECM remodeling-related ADAM20 ECM remodeling-related ADAM21 ECM remodeling-related ADAM22 ECM remodeling-related ADAM23 ECM remodeling-related ADAM28 ECM remodeling-related ADAM29 ECM remodeling-related ADAM3 ECM remodeling-related ADAM30 ECM remodeling-related ADAM5 ECM remodeling-related ADAM7 ECM remodeling-related ADAM8 ECM remodeling-related ADAM9 ECM remodeling-related ADAMTS1 ECM remodeling-related ADAMTS10 ECM remodeling-related ADAMTS12 ECM remodeling-related ADAMTS13 ECM remodeling-related ADAMTS14 ECM remodeling-related ADAMTS15 ECM remodeling-related ADAMTS16 ECM remodeling-related ADAMTS17 ECM remodeling-related ADAMTS18 ECM remodeling-related ADAMTS19 ECM remodeling-related ADAMTS2 ECM remodeling-related ADAMTS20 ECM remodeling-related ADAMTS3 ECM remodeling-related ADAMTS4 ECM remodeling-related ADAMTS5 ECM remodeling-related ADAMTS6 ECM remodeling-related ADAMTS7 ECM remodeling-related ADAMTS8 ECM remodeling-related ADAMTS9 ECM remodeling-related ADAMTSL1 ECM remodeling-related ADAMTSL2 ECM remodeling-related ADAMTSL3 ECM remodeling-related ADAMTSL4 ECM remodeling-related ADAMTSL5 ECM remodeling-related AGRIN ECM ALCAM Cell-cell adhesion ANGPT1 Soluble factors and receptors -
Investigation of the Underlying Hub Genes and Molexular Pathogensis in Gastric Cancer by Integrated Bioinformatic Analyses
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423656; this version posted December 22, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Investigation of the underlying hub genes and molexular pathogensis in gastric cancer by integrated bioinformatic analyses Basavaraj Vastrad1, Chanabasayya Vastrad*2 1. Department of Biochemistry, Basaveshwar College of Pharmacy, Gadag, Karnataka 582103, India. 2. Biostatistics and Bioinformatics, Chanabasava Nilaya, Bharthinagar, Dharwad 580001, Karanataka, India. * Chanabasayya Vastrad [email protected] Ph: +919480073398 Chanabasava Nilaya, Bharthinagar, Dharwad 580001 , Karanataka, India bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423656; this version posted December 22, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract The high mortality rate of gastric cancer (GC) is in part due to the absence of initial disclosure of its biomarkers. The recognition of important genes associated in GC is therefore recommended to advance clinical prognosis, diagnosis and and treatment outcomes. The current investigation used the microarray dataset GSE113255 RNA seq data from the Gene Expression Omnibus database to diagnose differentially expressed genes (DEGs). Pathway and gene ontology enrichment analyses were performed, and a proteinprotein interaction network, modules, target genes - miRNA regulatory network and target genes - TF regulatory network were constructed and analyzed. Finally, validation of hub genes was performed. The 1008 DEGs identified consisted of 505 up regulated genes and 503 down regulated genes. -
Proquest Dissertations
urn u Ottawa L'Universitd canadienne Canada's university FACULTE DES ETUDES SUPERIEURES l^^l FACULTY OF GRADUATE AND ET POSTDOCTORALES u Ottawa POSTDOCTORAL STUDIES I.'University emiadienne Canada's university Charles Gyamera-Acheampong AUTEUR DE LA THESE / AUTHOR OF THESIS Ph.D. (Biochemistry) GRADE/DEGREE Biochemistry, Microbiology and Immunology FACULTE, ECOLE, DEPARTEMENT / FACULTY, SCHOOL, DEPARTMENT The Physiology and Biochemistry of the Fertility Enzyme Proprotein Convertase Subtilisin/Kexin Type 4 TITRE DE LA THESE / TITLE OF THESIS M. Mbikay TIRECTWRTDIRICTR^ CO-DIRECTEUR (CO-DIRECTRICE) DE LA THESE / THESIS CO-SUPERVISOR EXAMINATEURS (EXAMINATRICES) DE LA THESE/THESIS EXAMINERS A. Basak G. Cooke F .Kan V. Mezl Gary W. Slater Le Doyen de la Faculte des etudes superieures et postdoctorales / Dean of the Faculty of Graduate and Postdoctoral Studies Library and Archives Bibliotheque et 1*1 Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington OttawaONK1A0N4 Ottawa ON K1A 0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-59504-6 Our file Notre reference ISBN: 978-0-494-59504-6 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library and permettant a la Bibliotheque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par I'lnternet, prefer, telecommunication or on the Internet, distribuer et vendre des theses partout dans le loan, distribute and sell theses monde, a des fins commerciales ou autres, sur worldwide, for commercial or non support microforme, papier, electronique et/ou commercial purposes, in microform, autres formats. -
Protein Disulfide Isomerase Homolog PDILT Is Required for Quality Control
Correction DEVELOPMENTAL BIOLOGY Correction for “Protein disulfide isomerase homolog PDILT is required for quality control of sperm membrane protein ADAM3 and male infertility,” by Keizo Tokuhiro, Masahito Ikawa, Adam M. Benham, and Masaru Okabe, which appeared in issue 10, March 6, 2012, of Proc Natl Acad Sci USA (109: 3850–3855; first published February 22, 2012; 10.1073/pnas. 1117963109). The authors note that the title appeared incorrectly. The title should instead appear as “Protein disulfide isomerase homolog PDILT is required for quality control of sperm membrane protein ADAM3 and male fertility.” The online version has been corrected. www.pnas.org/cgi/doi/10.1073/pnas.1204275109 CORRECTION www.pnas.org PNAS | April 10, 2012 | vol. 109 | no. 15 | 5905 Downloaded by guest on September 24, 2021 Protein disulfide isomerase homolog PDILT is required for quality control of sperm membrane protein ADAM3 and male fertility Keizo Tokuhiroa, Masahito Ikawaa,1, Adam M. Benhama,b, and Masaru Okabea,c,d aResearch Institute for Microbial Diseases, cGraduate School of Pharmaceutical Sciences, and dImmunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan; and bSchool of Biological and Biomedical Sciences, Durham University, Durham DH1 3LE, United Kingdom Edited by Ryuzo Yanagimachi, Institute for Biogenesis Research, University of Hawaii, Honolulu, HI, and approved January 31, 2012 (received for review November 1, 2011) A disintegrin and metalloproteinase 3 (ADAM3) is a sperm mem- misfolded proteins. Whereas homologous lectin chaperones, brane protein critical for both sperm migration from the uterus calnexin/calreticulin (CANX/CALR), chiefly mediate nascent into the oviduct and sperm primary binding to the zona pellucida glycoprotein folding in the somatic cells (14), testicular germ (ZP). -
The Emerging Role of Matrix Metalloproteases of the ADAM Family in Male Germ Cell Apoptosis
review REVIEW Spermatogenesis 1:3, 195-208; July/August/September 2011; © 2011 Landes Bioscience The emerging role of matrix metalloproteases of the ADAM family in male germ cell apoptosis Ricardo D. Moreno,* Paulina Urriola-Muñoz and Raúl Lagos-Cabré Departamento de Fisiología; Pontificia Universidad Católica de Chile; Santiago, Chile Key words: spermatogenesis, apoptosis, metalloprotease, infertility Constitutive germ cell apoptosis during mammalian sperm- Despite that some data suggest that germ cell apoptosis is autono- atogenesis is a key process for controlling sperm output and to mous (independent of the environment), the role of the Sertoli eliminate damaged or unwanted cells. An increase or decrease cell should not be disregarded, because it may provide important in the apoptosis rate has deleterious consequences and leads survival and/or dead clues to germ cells (see below). Germ cell to low sperm production. Apoptosis in spermatogenesis has been widely studied, but the mechanism by which it is induced apoptosis has been shown to play an important role in control- under physiological or pathological conditions has not been ling sperm output in many species, and in humans it has been 5-10 clarified. We have recently identified the metalloprotease related to infertility. Additionally, it has been proposed that ADAM17 (TACE) as a putative physiological inducer of germ the purported decline in global sperm production is caused by cell apoptosis. The mechanisms involved in regulating the environmental xenoestrogens that induce germ cell apoptosis.11 shedding of the ADAM17 extracellular domain are still far In the same way, a modern lifestyle and the use of underwear has from being understood, although they are important in order been proposed to induce elevated scrotal temperature that may to understand cell-cell communications. -
Relevance of Platelet Desialylation and Thrombocytopenia In
Relevance of platelet desialylation and thrombocytopenia in type 2B von Willebrand disease: preclinical and clinical evidence Annabelle Dupont, Christelle Soukaseum, Mathilde Cheptou, Frédéric Adam, Thomas Nipoti, Marc-Damien Lourenco-Rodrigues, Paulette Legendre, Valérie Proulle, Antoine Rauch, Charlotte Kawecki, et al. To cite this version: Annabelle Dupont, Christelle Soukaseum, Mathilde Cheptou, Frédéric Adam, Thomas Nipoti, et al.. Relevance of platelet desialylation and thrombocytopenia in type 2B von Willebrand disease: preclin- ical and clinical evidence. Haematologica, Ferrata Storti Foundation, 2019, pp.haematol.2018.206250. 10.3324/haematol.2018.206250. hal-02347340 HAL Id: hal-02347340 https://hal.archives-ouvertes.fr/hal-02347340 Submitted on 5 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Published Ahead of Print on February 28, 2019, as doi:10.3324/haematol.2018.206250. Copyright 2019 Ferrata Storti Foundation. Relevance of platelet desialylation and thrombocytopenia in type 2B von Willebrand disease: preclinical and clinical evidence by Annabelle Dupont, Christelle Soukaseum, Mathilde Cheptou, Frédéric Adam, Thomas Nipoti, Marc-Damien Lourenco-Rodrigues, Paulette Legendre, Valérie Proulle, Antoine Rauch, Charlotte Kawecki, Marijke Bryckaert, Jean-Philippe Rosa, Camille Paris, Catherine Ternisien, Pierre Boisseau, Jenny Goudemand, Delphine Borgel, Dominique Lasne, Pascal Maurice, Peter J. -
A Disintegrin and Metalloprotease
Review A Disintegrin and Metalloprotease (ADAM): Historical Overview of Their Functions Nives Giebeler and Paola Zigrino * Department of Dermatology and Venerology, University of Cologne, Cologne 50937, Germany; [email protected] * Correspondence: [email protected]; Tel.: +49-221-478-97443 Academic Editors: Jay Fox and José María Gutiérrez Received: 14 March 2016; Accepted: 19 April 2016; Published: 23 April 2016 Abstract: Since the discovery of the first disintegrin protein from snake venom and the following identification of a mammalian membrane-anchored metalloprotease-disintegrin implicated in fertilization, almost three decades of studies have identified additional members of these families and several biochemical mechanisms regulating their expression and activity in the cell. Most importantly, new in vivo functions have been recognized for these proteins including cell partitioning during development, modulation of inflammatory reactions, and development of cancers. In this review, we will overview the a disintegrin and metalloprotease (ADAM) family of proteases highlighting some of the major research achievements in the analysis of ADAMs’ function that have underscored the importance of these proteins in physiological and pathological processes over the years. Keywords: ADAM; disintegrin; SVMP 1. Some Generalities ADAMs (a disintegrin and metalloproteinases), originally also known as MDC proteins (metalloproteinase/disintegrin/cysteine-rich), belong to the Metzincins superfamily of metalloproteases. The timeline of key events in ADAM research is shown in Figure1. Figure 1. Timeline of key events in ADAMs research. The dates correspond to the publication year of the first article related to the event. Toxins 2016, 8, 122; doi:10.3390/toxins8040122 www.mdpi.com/journal/toxins Toxins 2016, 8, 122 2 of 14 Together with snake venom metalloproteases (SVMPs), ADAM and ADAMTS (a disintegrin and metalloproteinases with thrombospondin motif) proteins form the M12 (MEROP database; https://merops.sanger.ac.uk/) Adamalysin subfamily of metallopeptidases. -
A Genomic Analysis of Rat Proteases and Protease Inhibitors
A genomic analysis of rat proteases and protease inhibitors Xose S. Puente and Carlos López-Otín Departamento de Bioquímica y Biología Molecular, Facultad de Medicina, Instituto Universitario de Oncología, Universidad de Oviedo, 33006-Oviedo, Spain Send correspondence to: Carlos López-Otín Departamento de Bioquímica y Biología Molecular Facultad de Medicina, Universidad de Oviedo 33006 Oviedo-SPAIN Tel. 34-985-104201; Fax: 34-985-103564 E-mail: [email protected] Proteases perform fundamental roles in multiple biological processes and are associated with a growing number of pathological conditions that involve abnormal or deficient functions of these enzymes. The availability of the rat genome sequence has opened the possibility to perform a global analysis of the complete protease repertoire or degradome of this model organism. The rat degradome consists of at least 626 proteases and homologs, which are distributed into five catalytic classes: 24 aspartic, 160 cysteine, 192 metallo, 221 serine, and 29 threonine proteases. Overall, this distribution is similar to that of the mouse degradome, but significatively more complex than that corresponding to the human degradome composed of 561 proteases and homologs. This increased complexity of the rat protease complement mainly derives from the expansion of several gene families including placental cathepsins, testases, kallikreins and hematopoietic serine proteases, involved in reproductive or immunological functions. These protease families have also evolved differently in the rat and mouse genomes and may contribute to explain some functional differences between these two closely related species. Likewise, genomic analysis of rat protease inhibitors has shown some differences with the mouse protease inhibitor complement and the marked expansion of families of cysteine and serine protease inhibitors in rat and mouse with respect to human. -
Supplementary Material
Table S1 . Genes up-regulated in the CL of stimulated in relation to control animals ( 1.5 fold, P ≤ 0.05). UniGene ID Gene Title Gene Symbol fold change P value Bt.16350.2.A1_s_at guanylate binding protein 5 GBP5 4.42 0.002 Bt.2498.2.A1_a_at fibrinogen gamma chain FGG 3.81 0.002 Bt.440.1.S1_at neurotensin NTS 3.74 0.036 major histocompatibility complex, class I, A /// major Bt.27760.1.S1_at histocompatibility complex, class I, A BoLA /// HLA-A 3.56 0.022 Bt.146.1.S1_at defensin, beta 4A DEFB4A 3.12 0.002 Bt.7165.1.S1_at chemokine (C-X-C motif) ligand 5 CXCL5 3.06 0.031 Bt.15731.1.A1_at V-set and immunoglobulin domain containing 4 VSIG4 3.03 0.047 Bt.22869.1.S2_at fatty acid binding protein 5 (psoriasis-associated) FABP5 3.02 0.006 Bt.4604.1.S1_a_at acyl-CoA synthetase medium-chain family member 1 ACSM1 2.93 0.001 Bt.6406.1.S3_at CCAAT/enhancer binding protein (C/EBP), delta CEBPD 2.92 0.011 Bt.19845.2.A1_at coagulation factor XIII, A1 polypeptide F13A1 2.83 0.005 Bt.209.3.S1_at lysozyme (renal amyloidosis) LYZ 2.77 0.0003 Bt.15908.1.S1_at methyltransferase like 7A METTL7A 2.59 0.007 Bt.28383.1.S1_at granulysin GNLY 2.58 0.034 Bt.20455.1.S1_at Microtubule-associated protein tau MAPT 2.56 0.047 Bt.6556.1.S1_at regakine 1 LOC504773 2.55 0.011 Bt.11259.1.S1_at putative ISG12(a) protein ISG12(A) 2.55 0.037 Bt.28243.1.S1_a_at vanin 1 VNN1 2.54 0.008 Bt.405.1.S1_at follistatin FST 2.52 0.002 Bt.9510.2.A1_a_at T-cell immunoglobulin and mucin domain containing 4 TIMD4 2.47 0.024 Bt.499.1.S1_a_at prolactin receptor PRLR 2.44 0.010 serpin peptidase -
ADAM28: Another Ambivalent Protease in Cancer
Cancer Letters 494 (2020) 18–26 Contents lists available at ScienceDirect Cancer Letters journal homepage: www.elsevier.com/locate/canlet ADAM28: Another ambivalent protease in cancer C´eline Hubeau a, Natacha Rocks b, Didier Cataldo a,c,* a Laboratory of Tumor and Development Biology, GIGA-Cancer, University of Li`ege, Li`ege, Belgium b Laboratory of Pharmaceutical Technology and Biopharmacy, CIRM, University of Li`ege, Li`ege, Belgium c Department of Respiratory Diseases, CHU of Li`ege, University of Li`ege, Li`ege, Belgium ARTICLE INFO ABSTRACT Keywords: Emergence of novel therapeutic options in a perspective of personalized therapy of cancer relies on the discovery ADAM28 of precise molecular mechanisms involved in the switch from a localized tumor to invasive metastasis spread. Cancer biomarker Pro-tumor functions have been mostly ascribed to proteolytic enzymes from the metalloproteinase family Cell proliferation including A Disintegrin And Metalloproteinases (ADAMs). Particularly, when expressed by cancer cells, ADAM28 Metastasis protease supports cancer cell proliferation, survival and migration as well as metastatic progression. In sharp Tumor microenvironment contrast, ADAM28 derived from the tumor microenvironment has shown to exert strong protective effects against deleterious metastasis dissemination. Indeed, depletion of host-derived ADAM28 (ADAM28 KO mice) accelerates colonization lung tissues, increases tumor foci implantation, and impairs T cell immune response. In this review, we outline specific ADAM28 functions when specifically expressed by carcinoma cells or by tumor microenvironment. Finally, we discuss about future research strategies that could be pursued to highlight new functions of this protease in cancer. 1. Introduction invasion of tumor cells as well as angiogenesis [3–5].