Disease of Aquatic Organisms 103:133
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Characterization and Complete Genome Sequence of Bacteriophage Vb Vc Srvc2, a Marine Phage That Infects Vibrio Campbellii
Characterization and complete genome sequence of bacteriophage vB_Vc_SrVc2, a marine phage that infects Vibrio campbellii Carlos Omar Lomelí-Ortega Centro de Investigaciónes Biológicas del Noroeste: Centro de Investigaciones Biologicas del Noroeste SC Alexis de Jesús Martínez-Sández Universidad Autónoma de Baja California Sur: Universidad Autonoma de Baja California Sur Diana Barajas-Sandoval Centro de Investigaciónes Biológicas del Noroeste: Centro de Investigaciones Biologicas del Noroeste SC Francisco Javier Magallón-Barajas Centro de Investigaciónes Biológicas del Noroeste: Centro de Investigaciones Biologicas del Noroeste SC Andrew Millard University of Leicester Juan Manuel Martínez-Villalobos Universidad Autónoma de Nuevo León: Universidad Autonoma de Nuevo Leon Elva Teresa Arechiga-Carvajal Universidad Autonoma de Nuevo Leon Eduardo Quiroz-Guzman ( [email protected] ) Centro de Investigaciones Biologicas del Noroeste SC https://orcid.org/0000-0002-4776-4564 Research Article Keywords: Vibrio campbellii, pathogen, bacteriophage, phage therapy Posted Date: August 20th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-779229/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/22 Abstract Vibrio campbellii is widely distributed in the marine environment and is an important pathogen of aquatic organisms such as shrimp, sh, and mollusks. The emergence of multi-drug resistance among these bacteria resulted in a worldwide public health problem, which requires alternative treatment approaches such as phage therapy. In the present study, we isolated a phage vB_Vc_SrVc2 from white shrimp hepatopancreas with symptoms of AHPND. Phage vB_Vc_SrVc2 is a member of the genus Maculvirus and the family Autographiviridae, with high lytic ability against Vibrio isolates. -
Delineating Virulence of Vibrio Campbellii
www.nature.com/scientificreports OPEN Delineating virulence of Vibrio campbellii: a predominant luminescent bacterial pathogen in Indian shrimp hatcheries Sujeet Kumar1*, Chandra Bhushan Kumar1,2, Vidya Rajendran1, Nishawlini Abishaw1, P. S. Shyne Anand1, S. Kannapan1, Viswas K. Nagaleekar3, K. K. Vijayan1 & S. V. Alavandi1 Luminescent vibriosis is a major bacterial disease in shrimp hatcheries and causes up to 100% mortality in larval stages of penaeid shrimps. We investigated the virulence factors and genetic identity of 29 luminescent Vibrio isolates from Indian shrimp hatcheries and farms, which were earlier presumed as Vibrio harveyi. Haemolysin gene-based species-specifc multiplex PCR and phylogenetic analysis of rpoD and toxR identifed all the isolates as V. campbellii. The gene-specifc PCR revealed the presence of virulence markers involved in quorum sensing (luxM, luxS, cqsA), motility (faA, lafA), toxin (hly, chiA, serine protease, metalloprotease), and virulence regulators (toxR, luxR) in all the isolates. The deduced amino acid sequence analysis of virulence regulator ToxR suggested four variants, namely A123Q150 (AQ; 18.9%), P123Q150 (PQ; 54.1%), A123P150 (AP; 21.6%), and P123P150 (PP; 5.4% isolates) based on amino acid at 123rd (proline or alanine) and 150th (glutamine or proline) positions. A signifcantly higher level of the quorum-sensing signal, autoinducer-2 (AI-2, p = 2.2e−12), and signifcantly reduced protease activity (p = 1.6e−07) were recorded in AP variant, whereas an inverse trend was noticed in the Q150 variants AQ and PQ. The pathogenicity study in Penaeus (Litopenaeus) vannamei juveniles revealed that all the isolates of AQ were highly pathogenic with Cox proportional hazard ratio 15.1 to 32.4 compared to P150 variants; PP (5.4 to 6.3) or AP (7.3 to 14). -
Siderophores from Marine Bacteria with Special Emphasis on Vibrionaceae
Archana et al Int. J. Pure App. Biosci. 7 (3): 58-66 (2019) ISSN: 2320 – 7051 Available online at www.ijpab.com DOI: http://dx.doi.org/10.18782/2320-7051.7492 ISSN: 2320 – 7051 Int. J. Pure App. Biosci. 7 (3): 58-66 (2019) Review Article Siderophores from Marine Bacteria with Special Emphasis on Vibrionaceae Archana V.1, K. Revathi2*, V. P. Limna Mol3, R. Kirubagaran3 1Department of Advanced Zoology and Biotechnology, Madras University, Chennai- 600005 2MAHER University, Chennai, Tamil Nadu – 600078 3Ocean Science and Technology for Islands, National Institute of Ocean Technology (NIOT), Ministry of Earth Sciences, Government of India, Pallikaranai, Chennai- 600100 *Corresponding Author E-mail: [email protected] Received: 11.04.2019 | Revised: 18.05.2019 | Accepted: 25.05.2019 ABSTRACT More than 500 siderophores have been isolated from a huge number of marine bacteria till date. With mankind’s ever-increasing search for novel molecules towards industrial and medical applications, siderophores have gained high importance. These chelating ligands have immense potential in promoting plant growth, drug-delivery, treatment of iron-overload, etc. Many of the potential siderophores have been isolated from bacteria like Pseudomonas, Bacillus, Nocardia, etc. Bacteria belonging to the family Vibrionaceae have recently gained focus owing to their rich potential in secreting siderophores. Many of the vibrionales, viz. Vibrio harveyii, V. anguillarium, V. campbellii. etc. are aquatic pathogens. These bacteria require iron for their growth and virulence, and hence produce a wide variety of siderophores. The genetic basis of siderophore production by Vibrio sp. has also been largely studied. Further detailed genetic analysis of the mode of siderophore production by Vibrionaceae would be highly effective to treat aquaculture diseases caused by these pathogenic organisms. -
First Characterisation of the Populations and Immune-Related
First characterisation of the populations and immune-related activities of hemocytes from two edible gastropod species, the disk abalone, Haliotis discus discus and the spiny top shell, Turbo cornutus. Ludovic Donaghy, Hyun-Ki Hong, Christophe Lambert, Heung-Sik Park, Won Joon Shim, Kwang-Sik Choi To cite this version: Ludovic Donaghy, Hyun-Ki Hong, Christophe Lambert, Heung-Sik Park, Won Joon Shim, et al.. First characterisation of the populations and immune-related activities of hemocytes from two edible gastropod species, the disk abalone, Haliotis discus discus and the spiny top shell, Turbo cornutus.. Fish and Shellfish Immunology, Elsevier, 2010, 28 (1), pp.87-97. 10.1016/j.fsi.2009.10.006. hal- 00460531 HAL Id: hal-00460531 https://hal.archives-ouvertes.fr/hal-00460531 Submitted on 1 Mar 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. First characterisation of the populations and immune-related activities of hemocytes from two edible gastropod species, the disk abalone, Haliotis discus discus and the spiny top shell, Turbo cornutus . Ludovic Donaghy a,b,* , Hyun-Ki Hong a, Christophe Lambert b, Heung-Sik Park c, Won Joon Shim d, Kwang-Sik Choi a. -
A Novel Vibriophage Vb Vcas HC Containing Lysogeny-Related Gene Has Strong Lytic Ability Against Pathogenic Bacteria
Virologica Sinica www.virosin.org https://doi.org/10.1007/s12250-020-00271-w www.springer.com/12250 (0123456789().,-volV)(0123456789().,-volV) RESEARCH ARTICLE A Novel Vibriophage vB_VcaS_HC Containing Lysogeny-Related Gene Has Strong Lytic Ability against Pathogenic Bacteria 1,2 1,2 1,2 1 3 3 Chengcheng Li • Zengmeng Wang • Jiulong Zhao • Long Wang • Guosi Xie • Jie Huang • Yongyu Zhang1,2 Received: 2 March 2020 / Accepted: 8 June 2020 Ó Wuhan Institute of Virology, CAS 2020 Abstract To avoid the negative effects of antibiotics, using phage to prevent animal disease becomes a promising method in aquaculture. Here, a lytic phage provisionally named vB_VcaS_HC that can infect the pathogen (i.e., Vibrio campbellii 18) of prawn was isolated. The phage has an isometric head and a non-contractile tail. During phage infection, the induced host mortality in 5.5 h reached ca. 96%, with a latent period of 1.5 h and a burst size of 172 PFU/cell. It has an 81,566 bp circular dsDNA genome containing 121 open reading frames (ORFs), and ca. 71% of the ORFs are functionally unknown. Comparative genomic and phylogenetic analysis revealed that it is a novel phage belonging to Delepquintavirus, Siphoviridae, Caudovirales. In the phage genome, besides the ordinary genes related to structure assembly and DNA metabolism, there are 10 auxiliary metabolic genes. For the first time, the pyruvate phosphate dikinase (PPDK) gene was found in phages whose product is a key rate-limiting enzyme involving Embden-Meyerhof-Parnas (EMP) reaction. Interestingly, although the phage has a strong bactericidal activity and contains a potential lysogeny related gene, i.e., the recombinase (RecA) gene, we did not find the phage turned into a lysogenic state. -
White Abalone (Haliotis Sorenseni)
White Abalone (Haliotis sorenseni) Five-Year Status Review: Summary and Evaluation Photo credits: Joshua Asel (left and top right photos); David Witting, NOAA Restoration Center (bottom right photo) National Marine Fisheries Service West Coast Region Long Beach, CA July 2018 White Abalone 5- Year Status Review July 2018 Table of Contents EXECUTIVE SUMMARY ............................................................................................................. i 1.0 GENERAL INFORMATION .............................................................................................. 1 1.1 Reviewers ......................................................................................................................... 1 1.2 Methodology used to complete the review ...................................................................... 1 1.3 Background ...................................................................................................................... 1 2.0 RECOVERY IMPLEMENTATION ................................................................................... 3 2.2 Biological Opinions.......................................................................................................... 3 2.3 Addressing Key Threats ................................................................................................... 4 2.4 Outreach Partners ............................................................................................................. 5 2.5 Recovery Coordination ................................................................................................... -
Characterization of Calcineurin a and B Genes in the Abalone, Haliotis Diversicolor, and Their Immune Response Role During Bacterial Infection
Characterization of calcineurin A and B genes in the abalone, Haliotis diversicolor, and their immune response role during bacterial infection Tiranan Buddawong1, Somluk Asuvapongpatana1, Saengchan Senapin2,3, Carmel McDougall4 and Wattana Weerachatyanukul1 1 Department of Anatomy, Faculty of Science, Mahidol University, Ratchathewi, Bangkok, Thailand 2 Center of Excellence for Shrimp Molecular Biology and Biotechnology (Centex Shrimp), Faculty of Science, Mahidol University, Ratchathewi, Bangkok, Thailand 3 National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Klongluang, Pathumthani, Thailand 4 Australian Rivers Institute, Griffith University, Nathan, Queensland, Australia ABSTRACT Calcineurin (CN) is known to be involved in many biological processes, particularly, the immune response mechanism in many invertebrates. In this study, we characterized both HcCNA and HcCNB genes in Haliotis diversicolor, documented their expression in many tissues, and discerned their function as immune responsive genes against Vibrio parahaemolyticus infection. Similar to other mollusk CNs, the HcCNA gene lacked a proline-rich domain and comprised only one isoform of its catalytic unit, in contrast to CNs found in mammals. HcCNB was highly conserved in both sequence and domain architecture. Quantitative PCR and in situ hybridization revealed that the genes were broadly expressed and were not restricted to tissues traditionally associated with immune function. Upon infection of H. diversicolor with V. parahaemolyticus (a bacteria that causes serious disease in crustaceans and mollusks), both HcCNA and HcCNB genes were highly up-regulated at the early phase of bacterial infection. HcCNB was expressed significantly higher than HcCNA in response to bacterial challenge, Submitted 12 November 2019 Accepted 9 March 2020 suggesting its independent or more rapid response to bacterial infection. -
Karyotype of Pacific Red Abalone Haliotis Rufescens (Archaeogastropoda: Haliotidae) Using Image Analysis
Journal of Shellfish Research, Vol. 23, No. 1, 205–209, 2004. KARYOTYPE OF PACIFIC RED ABALONE HALIOTIS RUFESCENS (ARCHAEOGASTROPODA: HALIOTIDAE) USING IMAGE ANALYSIS CRISTIAN GALLARDO-ESCÁRATE,1,2 JOSUÉ ÁLVAREZ-BORREGO,2,* MIGUEL ÁNGEL DEL RÍO PORTILLA,1 AND VITALY KOBER3 1Departamento de Acuicultura. División de Oceanología, 2Departamento de Óptica, 3Departamento de Ciencias de la Computación, División de Física Aplicada, Centro de Investigación Científica y de Educación Superior de Ensenada. Km 107 Carretera Tijuana – Ensenada, Código Postal 22860. Ensenada, B.C. México ABSTRACT This report describes a karyotypic analysis in the Pacific red abalone Haliotis rufescens using image analysis. This is the first karyotype reported for this species. Chromosome number and karyotype are the basic information of a genome and important for ploidy manipulation, genomic analysis, and our understanding about chromosomal evolution. In this study we found that the diploid number of chromosomes in the red abalone was 36. Using image analysis by rank-order and digital morphologic filters, it was possible to determine total length of chromosomes and relative arm length in digitally enhanced image, elimination of noise and improving the contrast for the measurements. The karyotype consisted of eight pairs of metacentric chromosomes, eight pairs of submetacentric, one pair submetacentric/metacentric, and one pair of subtelocentric chromosomes. The black abalone, Haliotis cracherodii, also with 36 chromosomes and with a similar geographic distribution, has eight pairs of metacentric, eight pairs of submetacentric, and two pairs subtelocentric. This study contributes with new information about the karyology in the family Haliotidae found in California Coast waters and gives some support the Thetys’ model about biogeographical origin, from the Mediterranean Sea to the East Pacific Ocean. -
Shelled Molluscs
Encyclopedia of Life Support Systems (EOLSS) Archimer http://www.ifremer.fr/docelec/ ©UNESCO-EOLSS Archive Institutionnelle de l’Ifremer Shelled Molluscs Berthou P.1, Poutiers J.M.2, Goulletquer P.1, Dao J.C.1 1 : Institut Français de Recherche pour l'Exploitation de la Mer, Plouzané, France 2 : Muséum National d’Histoire Naturelle, Paris, France Abstract: Shelled molluscs are comprised of bivalves and gastropods. They are settled mainly on the continental shelf as benthic and sedentary animals due to their heavy protective shell. They can stand a wide range of environmental conditions. They are found in the whole trophic chain and are particle feeders, herbivorous, carnivorous, and predators. Exploited mollusc species are numerous. The main groups of gastropods are the whelks, conchs, abalones, tops, and turbans; and those of bivalve species are oysters, mussels, scallops, and clams. They are mainly used for food, but also for ornamental purposes, in shellcraft industries and jewelery. Consumed species are produced by fisheries and aquaculture, the latter representing 75% of the total 11.4 millions metric tons landed worldwide in 1996. Aquaculture, which mainly concerns bivalves (oysters, scallops, and mussels) relies on the simple techniques of producing juveniles, natural spat collection, and hatchery, and the fact that many species are planktivores. Keywords: bivalves, gastropods, fisheries, aquaculture, biology, fishing gears, management To cite this chapter Berthou P., Poutiers J.M., Goulletquer P., Dao J.C., SHELLED MOLLUSCS, in FISHERIES AND AQUACULTURE, from Encyclopedia of Life Support Systems (EOLSS), Developed under the Auspices of the UNESCO, Eolss Publishers, Oxford ,UK, [http://www.eolss.net] 1 1. -
Induction and Genome Analysis of HY01, a Newly Reported Prophage from an Emerging Shrimp Pathogen Vibrio Campbellii
microorganisms Article Induction and Genome Analysis of HY01, a Newly Reported Prophage from an Emerging Shrimp Pathogen Vibrio campbellii Taiyeebah Nuidate 1 , Aphiwat Kuaphiriyakul 1, Komwit Surachat 2,3 and Pimonsri Mittraparp-arthorn 1,3,* 1 Division of Biological Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90110, Thailand; [email protected] (T.N.); [email protected] (A.K.) 2 Division of Computational Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90110, Thailand; [email protected] 3 Molecular Evolution and Computational Biology Research Unit, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90110, Thailand * Correspondence: [email protected]; Tel.: +66-74-288-314 Abstract: Vibrio campbellii is an emerging aquaculture pathogen that causes luminous vibriosis in farmed shrimp. Although prophages in various aquaculture pathogens have been widely reported, there is still limited knowledge regarding prophages in the genome of pathogenic V. campbellii. Here, we describe the full-genome sequence of a prophage named HY01, induced from the emerging shrimp pathogen V. campbellii HY01. The phage HY01 was induced by mitomycin C and was morphologically characterized as long tailed phage. V. campbellii phage HY01 is composed of 41,772 bp of dsDNA with a G+C content of 47.45%. A total of 60 open reading frames (ORFs) were identified, of which 31 could be predicted for their biological functions. Twenty seven out of 31 predicted protein coding regions were matched with several encoded proteins of various Enterobacteriaceae, Pseudomonadaceae, Vibrionaceae, and other phages of Gram-negative bacteria. Interestingly, the comparative genome analysis revealed that the phage HY01 was only distantly related to Vibrio phage Va_PF430-3_p42 of Citation: Nuidate, T.; Kuaphiriyakul, fish pathogen V. -
Development of Vaccines and Diagnostic Monoclonal Antibodies Against Bacteria Associated with Diseases of Wild and Cultured Finf
Applications of Molecular Biology to Management of the Abalone Fishery Assoc. Prof. P. J. Hanna and Dr. B. Huang School of FIS HERIE S Biological RESEARCH & & Chemical DEVELO PMENT Sciences CORPORATIO N Project No. 95/002 FRDC Project 95/002 Applications of Molecular Biology to Management of the Abalone Fishery Applications of Molecular Biology to Management of the Abalone Fishery Final Report to Fisheries Research and Development Corporation (FRDC Project 95/002) Assoc. Prof. P. J. Hanna and Dr. B. Huang School of Biological and Chemical Sciences Faculty of Science and Technology Deakin University Geelong, Victoria, 3217 First Published 1999 Copyright Deakin University, 1998 Printed by Deakin University ISBN 0 7300 2713 9 i FRDC Project 95/002 Applications of Molecular Biology to Management of the Abalone Fishery Contents Page No. List of Abbreviations iv Acknowledgements v Non-technical Summary 1 Background 3 Need 9 Objectives 10 Methods 11 Results & Discussion 13 Benefits 26 Further Developments 27 Conclusions 29 References 32 Appendix 1: Valuable Information 40 Appendix 2: Staff list 41 Appendix 3: Description of PCR (Polymerase Chain Reaction) 42 Appendix 4: Distribution List of the Final Report 44 Appendix 5: Paper – Electrophoresis 46 Appendix 6: Paper – Journal of Shellfish Research 66 Appendix 7: Paper –Journal of Medical and Applied Malacology 81 Appendix 8: Paper – Marine Biology 102 ii FRDC Project 95/002 Applications of Molecular Biology to Management of the Abalone Fishery Acknowledgements The Project Supervisor, Assoc. Prof. P. J. Hanna, wishes to acknowledge the important contribution made by two PhD students for their dedicated and enthusiastic research on the project. -
Pubblicazione Mensile Edita Dalla Unione Malacologica Italiana
Distribution and Biogeography of the Recent Haliotidae (Gastropoda: Vetigastropoda) Worid-wide Daniel L. Geiger Autorizzazione Tribunale di Milano n. 479 del 15 Ottobre 1983 Spedizione in A.P. Art. 2 comma 20/C Legge 662/96 - filiale di Milano Maggio 2000 - spedizione n. 2/3 • 1999 ISSN 0394-7149 SOCIETÀ ITALIANA DI MALACOLOGIA SEDE SOCIALE: c/o Acquano Civico, Viale Gadio, 2 - 20121 Milano CONSIGLIO DIRETTIVO 1999-2000 PRESIDENTE: Riccardo Giannuzzi -Savelli VICEPRESIDENTE: Bruno Dell'Angelo SEGRETARIO: Paolo Crovato TESORIERE: Sergio Duraccio CONSIGLIERI: Mauro Brunetti, Renato Chemello, Stefano Chiarelli, Paolo Crovato, Bruno Dell’Angelo, Sergio Duraccio, Maurizio Forli, Riccardo Giannuzzi-Savelli, Mauro Mariani, Pasquale Micali, Marco Oliverio, Francesco Pusateri, Giovanni Repetto, Carlo Smriglio, Gianni Spada REVISORI DEI CONTI: Giuseppe Fasulo, Aurelio Meani REDAZIONE SCIENTIFICA - EDITORIAL BOARD DIRETTORE - EDITOR: Daniele BEDULLI Dipartimento di Biologia Evolutiva e Funzionale. V.le delle Scienze. 1-43100 Parma, Italia. Tel. + + 39 (521) 905656; Fax ++39 (521) 905657 E-mail : [email protected] CO-DIRETTORI - CO-EDITORS: Renato CHEMELLO (Ecologia - Ecology) Dipartimento di Biologia Animale. Via Archirafi 18. 1-90123 Palermo, Italia. Tel. + + 39 (91) 6177159; Fax + + 39 (9D 6172009 E-mail : [email protected] Marco OLIVERIO (Sistematica - Systematics) Dipartimento di Biologia Animale e dell’Uomo. Viale dell’Università 32. 1-00185 Roma, Italia. E-mail : [email protected] .it Italo NOFRONI (Sistematica - Systematict) Via Benedetto Croce, 97. 1-00142 Roma, Italia. Tel + + 39(06) 5943407 E-mail : [email protected] Pasquale MICALI (Relazioni con i soci - Tutor) Via Papina, 17. 1-61032 Fano (PS), Italia. Tel ++39 (0721) 824182 - Van Aartsen, Daniele Bedulli, Gianni Bello, Philippe Bouchet, Erminio Caprotti, Riccardo Catta- MEMBRI ADVISORS : Jacobus J.