An Updated Checklist of the Myxomycetes in the Maltese Islands – an Overview of an Ongoing Research
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Zygote Gene Expression and Plasmodial Development in Didymium Iridis
DePaul University Via Sapientiae College of Science and Health Theses and Dissertations College of Science and Health Summer 8-25-2019 Zygote gene expression and plasmodial development in Didymium iridis Sean Schaefer DePaul University, [email protected] Follow this and additional works at: https://via.library.depaul.edu/csh_etd Part of the Biology Commons Recommended Citation Schaefer, Sean, "Zygote gene expression and plasmodial development in Didymium iridis" (2019). College of Science and Health Theses and Dissertations. 322. https://via.library.depaul.edu/csh_etd/322 This Thesis is brought to you for free and open access by the College of Science and Health at Via Sapientiae. It has been accepted for inclusion in College of Science and Health Theses and Dissertations by an authorized administrator of Via Sapientiae. For more information, please contact [email protected]. Zygote gene expression and plasmodial development in Didymium iridis A Thesis presented in Partial fulfillment of the Requirements for the Degree of Master of Biology By Sean Schaefer 2019 Advisor: Dr. Margaret Silliker Department of Biological Sciences College of Liberal Arts and Sciences DePaul University Chicago, IL Abstract: Didymium iridis is a cosmopolitan species of plasmodial slime mold consisting of two distinct life stages. Haploid amoebae and diploid plasmodia feed on microscopic organisms such as bacteria and fungi through phagocytosis. Sexually compatible haploid amoebae act as gametes which when fused embark on an irreversible developmental change resulting in a diploid zygote. The zygote can undergo closed mitosis resulting in a multinucleated plasmodium. Little is known about changes in gene expression during this developmental transition. Our principal goal in this study was to provide a comprehensive list of genes likely to be involved in plasmodial development. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
A First Contribution to the Knowledge of Mycetozoa from Aveyron (France)
Carnets natures, 2021, vol. 8 : 67-81 A First Contribution to the knowledge of Mycetozoa from Aveyron (France) Jonathan Cazabonne¹, Michel Ferrières² et Jean-Louis Menos³ Abstract A first official taxonomic checklist of myxomycetes from the French department Aveyron is presented. As the result of data collected by the Mycological and Botanical Association of Aveyron (AMBA), literature and online research, a total of 21 species representing 14 genera, 7 families and 5 orders, were recorded. The following information for each taxon was reported: Latin name, author(s), Basionym, locality (if known) and record sources. Macrophotographs of some new records are also appended. This work is a contribution to the knowledge of myxomycetes of Aveyron, which will eventually be integrated into a national checklist project of French myxomycetes. Key words: Biodiversity, inventory, taxonomy, Myxomycetes, Occitanie. Résumé Une première contribution à la connaissance des Mycetozoa de l’Aveyron (France) Une première liste officielle sur les Myxomycètes du département français de l’Aveyron est présentée. Au total, 21 espèces représentant 14 genres, 7 familles et 5 ordres, ont été listées, grâce aux données collectées par l’Association Mycologique et Botanique de l’Aveyron (AMBA) et à un travail de recherche bibliographique. Les informations suivantes pour chaque taxon ont été indiquées : nom latin, auteur(s), basionyme, localité (si connue) et les références. Des macrophotographies de quelques nouveaux taxa aveyronnais sont aussi annexées. Ce travail est une contribution à la connaissance des myxomycètes d’Aveyron, qui sera éventuellement intégré à un projet de checklist nationale des Myxomycètes de France. Mots clés : Biodiversité, inventaire, taxonomie, Myxomycètes, Occitanie. -
The Occurrence of Myxomycetes on Different Decay Stages of Trunks of Picea Abies, Pinus Sylvestris and Betula Spp. in a Small Oldgrowth Forest in Southern Finland
Karstenia 42: 13- 22, 2002 The occurrence of myxomycetes on different decay stages of trunks of Picea abies, Pinus sylvestris and Betula spp. in a small oldgrowth forest in southern Finland TARJA UKKOLA UKKOLA, T. 2002: The occurrence of myxomycetes on different decay stages of trunks of Picea abies, Pinus sylvestris and Betula spp. in a small oldgrowth forest in southern Finland. - Karstenia 42: 13- 22. Helsinki. ISSN 0453-3402. The occurrence of myxomycetes was studied on fallen trunks of Picea abies, Pinus sylvestris, and Betula spp. (B. pendula and B. pubescens) in a small oldgrowth forest in southern Finland in May 1998 - September 1999. The study site is located in Luukkaa Recreation Area, and was left in pristine state in 1966. The sample trunks were chosen to represent different stages of decomposition and checked every second or fourth > eek in all for 17 times. A total of 325 myxomycete specimens representing 44 taxa in 16 genera were observed. Four taxa, Comatricha pulchella var. fusca, Lycogala exiguum, Licea cf. pus ilia, and Physarum bethelii are new records to Finland. During the study, myxomycetes were most abundant on decomposing trunks of Betula spp. (123 specimens), especially on well-decayed trunks. The species diversity was about the same on all studied tree species: 27 taxa were recorded on P abies and P sylvestris, and 22 on Betula spp. The largest di ersity was on two pine trunks with fairly soft wood (a total of 19 taxa). The common myxomycetes, Ceratiomyxa fruticulosa and Lycogala epidendrum, represent generalists in this study, being abundant and present at nearly all decay stages of all studied tree species. -
Slime Moulds
Queen’s University Biological Station Species List: Slime Molds The current list has been compiled by Richard Aaron, a naturalist and educator from Toronto, who has been running the Fabulous Fall Fungi workshop at QUBS between 2009 and 2019. Dr. Ivy Schoepf, QUBS Research Coordinator, edited the list in 2020 to include full taxonomy and information regarding species’ status using resources from The Natural Heritage Information Centre (April 2018) and The IUCN Red List of Threatened Species (February 2018); iNaturalist and GBIF. Contact Ivy to report any errors, omissions and/or new sightings. Based on the aforementioned criteria we can expect to find a total of 33 species of slime molds (kingdom: Protozoa, phylum: Mycetozoa) present at QUBS. Species are Figure 1. One of the most commonly encountered reported using their full taxonomy; common slime mold at QUBS is the Dog Vomit Slime Mold (Fuligo septica). Slime molds are unique in the way name and status, based on whether the species is that they do not have cell walls. Unlike fungi, they of global or provincial concern (see Table 1 for also phagocytose their food before they digest it. details). All species are considered QUBS Photo courtesy of Mark Conboy. residents unless otherwise stated. Table 1. Status classification reported for the amphibians of QUBS. Global status based on IUCN Red List of Threatened Species rankings. Provincial status based on Ontario Natural Heritage Information Centre SRank. Global Status Provincial Status Extinct (EX) Presumed Extirpated (SX) Extinct in the -
Biodiversity of Plasmodial Slime Moulds (Myxogastria): Measurement and Interpretation
Protistology 1 (4), 161–178 (2000) Protistology August, 2000 Biodiversity of plasmodial slime moulds (Myxogastria): measurement and interpretation Yuri K. Novozhilova, Martin Schnittlerb, InnaV. Zemlianskaiac and Konstantin A. Fefelovd a V.L.Komarov Botanical Institute of the Russian Academy of Sciences, St. Petersburg, Russia, b Fairmont State College, Fairmont, West Virginia, U.S.A., c Volgograd Medical Academy, Department of Pharmacology and Botany, Volgograd, Russia, d Ural State University, Department of Botany, Yekaterinburg, Russia Summary For myxomycetes the understanding of their diversity and of their ecological function remains underdeveloped. Various problems in recording myxomycetes and analysis of their diversity are discussed by the examples taken from tundra, boreal, and arid areas of Russia and Kazakhstan. Recent advances in inventory of some regions of these areas are summarised. A rapid technique of moist chamber cultures can be used to obtain quantitative estimates of myxomycete species diversity and species abundance. Substrate sampling and species isolation by the moist chamber technique are indispensable for myxomycete inventory, measurement of species richness, and species abundance. General principles for the analysis of myxomycete diversity are discussed. Key words: slime moulds, Mycetozoa, Myxomycetes, biodiversity, ecology, distribu- tion, habitats Introduction decay (Madelin, 1984). The life cycle of myxomycetes includes two trophic stages: uninucleate myxoflagellates General patterns of community structure of terrestrial or amoebae, and a multi-nucleate plasmodium (Fig. 1). macro-organisms (plants, animals, and macrofungi) are The entire plasmodium turns almost all into fruit bodies, well known. Some mathematics methods are used for their called sporocarps (sporangia, aethalia, pseudoaethalia, or studying, from which the most popular are the quantita- plasmodiocarps). -
What Substrate Cultures Can Reveal: Myxomycetes and Myxomycete-Like Organisms from the Sultanate of Oman
Mycosphere 6 (3): 356–384(2015) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2015 Online Edition Doi 10.5943/mycosphere/6/3/11 What substrate cultures can reveal: Myxomycetes and myxomycete-like organisms from the Sultanate of Oman Schnittler M1, Novozhilov YK2, Shadwick JDL3, Spiegel FW3, García-Carvajal E4, König P1 1Institute of Botany and Landscape Ecology, Ernst Moritz Arndt University Greifswald, Soldmannstr. 15, D-17487 Greifswald, Germany 2V.L. Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov St. 2, 197376 St. Petersburg, Russia 3University of Arkansas, Department of Biological Sciences, SCEN 601, 1 University of Arkansas, Fayetteville, AR 72701, USA 4Royal Botanic Garden (CSIC), Plaza de Murillo, 2, Madrid, E-28014, Spain Schnittler M, Novozhilov YK, Shadwick JDL, Spiegel FW, García-Carvajal E, König P 2015 – What substrate cultures can reveal: Myxomycetes and myxomycete-like organisms from the Sultanate of Oman. Mycosphere 6(3), 356–384, doi 10.5943/mycosphere/6/3/11 Abstract A total of 299 substrate samples collected throughout the Sultanate of Oman were analyzed for myxomycetes and myxomycete-like organisms (MMLO) with a combined approach, preparing one moist chamber culture and one agar culture for each sample. We recovered 8 forms of Myxobacteria, 2 sorocarpic amoebae (Acrasids), 19 known and 6 unknown taxa of protostelioid amoebae (Protostelids), and 50 species of Myxomycetes. Moist chambers and agar cultures completed each other. No method alone can detect the whole diversity of myxomycetes as the most species-rich group of MMLO. A significant overlap between the two methods was observed only for Myxobacteria and some myxomycetes with small sporocarps. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Slime Molds: Biology and Diversity
Glime, J. M. 2019. Slime Molds: Biology and Diversity. Chapt. 3-1. In: Glime, J. M. Bryophyte Ecology. Volume 2. Bryological 3-1-1 Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 18 July 2020 and available at <https://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 3-1 SLIME MOLDS: BIOLOGY AND DIVERSITY TABLE OF CONTENTS What are Slime Molds? ....................................................................................................................................... 3-1-2 Identification Difficulties ...................................................................................................................................... 3-1- Reproduction and Colonization ........................................................................................................................... 3-1-5 General Life Cycle ....................................................................................................................................... 3-1-6 Seasonal Changes ......................................................................................................................................... 3-1-7 Environmental Stimuli ............................................................................................................................... 3-1-13 Light .................................................................................................................................................... 3-1-13 pH and Volatile Substances -
MMA MASTERLIST - Sorted by Taxonomy
MMA MASTERLIST - Sorted by Taxonomy Sunday, December 10, 2017 Page 1 of 86 Amoebozoa Mycetomycota Protosteliomycetes Protosteliales Ceratiomyxaceae Ceratiomyxa fruticulosa Ceratiomyxa fruticulosa var. fruticulosa Ceratiomyxa fruticulosa var. poroides Ceratiomyxa sp. Mycetozoa Myxogastrea Incertae Sedis in Myxogastrea Liceaceae Licea minima Stemonitidaceae Brefeldia maxima Comatricha pulchella Comatricha sp. Comatricha typhoides Stemonitis axifera Stemonitis fusca Stemonitis sp. Stemonitis splendens Chromista Oomycota Incertae Sedis in Oomycota Peronosporales Peronosporaceae Plasmopara viticola Pythiaceae Pythium deBaryanum Oomycetes Saprolegniales Saprolegniaceae Saprolegnia sp. Peronosporea Albuginales Albuginaceae Albugo candida Fungus Ascomycota Ascomycetes Boliniales Boliniaceae Camarops petersii Capnodiales Capnodiaceae Scorias spongiosa Diaporthales Gnomoniaceae Cryptodiaporthe corni Sydowiellaceae Stegophora ulmea Valsaceae Cryphonectria parasitica Valsella nigroannulata Elaphomycetales Elaphomycetaceae Elaphomyces granulatus Elaphomyces sp. Erysiphales Erysiphaceae Erysiphe aggregata Erysiphe cichoracearum Erysiphe polygoni Microsphaera extensa Phyllactinia guttata Podosphaera clandestina Uncinula adunca Uncinula necator Hysteriales Hysteriaceae Glonium stellatum Leotiales Bulgariaceae Crinula caliciiformis Crinula sp. Mycocaliciales Mycocaliciaceae Phaeocalicium polyporaeum Peltigerales Collemataceae Leptogium cyanescens Lobariaceae Sticta fimbriata Nephromataceae Nephroma helveticum Peltigeraceae Peltigera evansiana Peltigera -
Nivicolousmyxomycetes
EXPLORING THE DIVERSITY OF N I V I C O L O U S M Y X O M Y C E T E S: An analysis of the genetic diversity, species distribution and community composition I N A U G U R A L D I S S E R T A T I O N Zur Erlangung des akademischen Grades eines Doctor rerum naturalium (Dr. rer. nat.) an der Mathematisch-Naturwissenschaftlichen Fakultät der Universität Greifswald vorgelegt von: Mathilde Borg Dahl Greifswald, 30. Januar 2018 Dekan: Prof. Dr. Werner Weitschies 1. Gutachter: Prof. Dr. Martin Schnittler 2. Gutachter: Ass. Prof. Regin Rønn 3. Gutachter: Prof. Carsten Suhr Jacobsen Tag der Promotion: 1. Oktober 2018 PREFACE This cumulative dissertation is a product of my just under three years enrolment in the graduate school RESPONSE (GRK 2010) under the supervision of Prof. Dr. Martin Schnittler. In these years I have conducted fieldwork (including seven trips to the German Alps and a journey to the Rocky Mountains) to collect nivicolous myxomycetes and soil. I have done numerous (~700) DNA extractions and obtained sequences of the collected specimens (Greifswald, DE) as well as an Illumina library (3x 48 samples) of myxamoebae, fungi and bacteria (Copenhagen, DK). In addition I have participated in international conferences in the Czech Republic (Ecology of Soil Microorganisms, 2015), Germany (3rd Thünen Symposium on Soil Metagenomics, 2016) and Canada (The ISME conference, 2016). All of the information presented henceforth was obtained from my original independent work with collaborations with experts from around the world. I was fortunate to work with Prof. -
A Checklist of Egyptian Fungi: I
Mycosphere 4 (4): 794–807 (2013) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2013 Online Edition Doi 10.5943/mycosphere/4/4/15 A checklist of Egyptian fungi: I. Protozoan fungal analogues Abdel-Azeem AM1* and Salem Fatma M1 1Laboratory of systematic Mycology, Botany and Microbiology Department, Faculty of Science, University of Suez Canal, Ismailia 41522, Egypt. e-mail: [email protected], [email protected] Abdel-Azeem AM, Salem Fatma M 2013 – A checklist of Egyptian fungi: I. Protozoan fungal analogues. Mycosphere 4(4), 794–807, Doi 10.5943/mycosphere/4/4/15 Abstract Records of Egyptian fungi are scattered through a wide array of journals, books, dissertations, and preliminary annotated checklists and compilations. By screening all available sources of information, it was possible to delineate 61 taxa, including 3 varieties, belonging to 29 genera of protozoan fungal analogues that have been reported from Egypt. A provisional key to the identification of reported taxa is given. This is the first species list of protozoan fungus-like analogues from Egypt. Key words – Amoebozoa – biodiversity – Cercozoa – documentation – Liceida – Mycobiota – Physarum Introduction For Egypt, only very few comprehensive assessments of local fungi have been published (e.g. El-Abyad and Abu-Taleb 1993; El-Abyad 1997; Abdel-Azeem, 2010). Documentation of the Egyptian fungi may be dated back to 4500 B.C., when ancient Egyptians produced a number of hieroglyphic reliefs of plants (many of which are psychedelic) on walls and within texts throughout Egypt (Abdel-Azeem 2010). Abdel-Azeem has traced the history of scientific work with fungi in Egypt from its earliest beginnings, almost 200 years ago, through to the present day and published a full review of the history of mycology in Egypt, together with updated assessment of 2281 species of fungi for the country, and an expectation of future perspectives for mycology in Egypt.