DNA-5-O- S Ot-On-O-8.As -O-On-Oh'ss Taxi & 8 8-1 Cataceoa-8 NA As S-PEG-38Agasksacrestsgescga-3 DNA As 8-Cacaccoagios CEO: C(-3 Patent Application Publication Jun

Total Page:16

File Type:pdf, Size:1020Kb

DNA-5-O- S Ot-On-O-8.As -O-On-Oh'ss Taxi & 8 8-1 Cataceoa-8 NA As S-PEG-38Agasksacrestsgescga-3 DNA As 8-Cacaccoagios CEO: C(-3 Patent Application Publication Jun US 201201498.43A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2012/0149843 A1 Chien et al. (43) Pub. Date: Jun. 14, 2012 (54) NANOFIBERS AND MORPHOLOGY Publication Classification SHIFTING MICELLES (51) Int. Cl. (75) Inventors: Miao-Ping Chien, San Diego, CA C08F 29/2 (2006.01) (US); Nathan C. Gianneschi, San A 6LX 9/70 (2006.01) Diego, CA (US) CI2O I/68 (2006.01) CO8F 299/00 (2006.01) (73) Assignee: THE REGENTS OF THE BOSD 7/4 (2006.01) UNIVERSITY OF A6IR 8/02 (2006.01) CALIFORNLA, Oakland, CA (US) CI2P 19/34 (2006.01) B82Y 4O/OO (2011.01) (21) Appl. No.: 13/363,645 B82Y5/00 (2011.01) (22) Filed: Feb. 1, 2012 (52) U.S. Cl. ......... 525/54.1; 424/401; 424/443; 435/6.1: 435/91.1 : 525/54.2; 427/216:977/788; 977/915; Related U.S. Application Data 977/890; 977/906 (63) Continuation of application No. PCT/US2010/ 044321, filed on Aug. 3, 2010. (57) ABSTRACT (60) Provisional application No. 61/230.924, filed on Aug. The invention discloses novel morphology shifting micelles 3, 2009, provisional application No. 61/316,325, filed and amphiphilic coated metal nanofibers. Methods of using on Mar. 22, 2010. and making the same are also disclosed. Assetsy whe Yxxx x: wa toxia 8A: is:tex : ona ... 8:kyi-xxx8 tapex 88-se: PEG - DNA-5-o- s ot-on-o-8.as -o-on-oh'ss taxi & 8 8-1 cataceoA-8 NA as S-PEG-38AGASKSACrestsgescGA-3 DNA as 8-cacAccoAgios CEO: C(-3 Patent Application Publication Jun. 14, 2012 Sheet 1 of 27 US 2012/0149843 A1 $peritai ixeie *:::s 8x : DNA-5-o-o: * DNA is 8-CGCAccoA-3 DNA a 5-PEG-GSAGAGAGACTGGGGCGA-3 DNA is 5'-cacAccoAGOC CCC-3 Patent Application Publication Jun. 14, 2012 Sheet 2 of 27 US 2012/0149843 A1 Patent Application Publication Jun. 14, 2012 Sheet 3 of 27 US 2012/0149843 A1 Patent Application Publication Jun. 14, 2012 Sheet 4 of 27 US 2012/0149843 A1 Patent Application Publication Jun. 14, 2012 Sheet 5 of 27 US 2012/0149843 A1 0xxx 8-888&Aaxx xxxico88088.xxxarcicacea. www.irs. 8-888-888-38A3Kxxx88088. Yxx, is 8.8x3xxxxx3:38 iyciropric :8:8::::::: Patent Application Publication Jun. 14, 2012 Sheet 6 of 27 US 2012/0149843 A1 Patent Application Publication Jun. 14, 2012 Sheet 7 of 27 US 2012/0149843 A1 i. § Patent Application Publication Jun. 14, 2012 Sheet 8 of 27 US 2012/0149843 A1 Patent Application Publication Jun. 14, 2012 Sheet 9 of 27 US 2012/0149843 A1 x figg Patent Application Publication Jun. 14, 2012 Sheet 10 of 27 US 2012/0149843 A1 Fig. 8 Patent Application Publication Jun. 14, 2012 Sheet 11 of 27 US 2012/0149843 A1 Patent Application Publication Jun. 14, 2012 Sheet 12 of 27 US 2012/0149843 A1 Patent Application Publication Jun. 14, 2012 Sheet 13 of 27 US 2012/0149843 A1 xt.8six Nicy Pli sixtixx xxix. g &* x8:88:8::::::::388& 3 * x8::::::::::::::::::::::: Patent Application Publication Jun. 14, 2012 Sheet 14 of 27 US 2012/0149843 A1 Fig. if S exity re-extixie keptigiite 8. 8::::::::::::: proteases . ... *:::8. x: 8:8-8 aaaaaaa-Xax 8::::::::::: phos. Kinase pratase * ATP x: x:ix8 six: Patent Application Publication Jun. 14, 2012 Sheet 15 of 27 US 2012/0149843 A1 i Patent Application Publication Jun. 14, 2012 Sheet 16 of 27 US 2012/0149843 A1 Fig. 3. Patent Application Publication Jun. 14, 2012 Sheet 17 of 27 US 2012/0149843 A1 Fig. { 1. 3. s s 88 38 : Tirse ars + xpitatase * 3: y * Kike 3 recialysis gy 2 8xxixiysis Patent Application Publication Jun. 14, 2012 Sheet 18 of 27 US 2012/0149843 A1 sexy Patent Application Publication Jun. 14, 2012 Sheet 19 of 27 US 2012/0149843 A1 Fig. *:::::: 4x :- .. •x s: Nikayae & X s & ck six &3. (guitari & : -: : s x as & is 38 ft 8 &:8: 8:388:::::::::::::: 8888:888: Fig. 8 --x"R" Patent Application Publication Jun. 14, 2012 Sheet 20 of 27 US 2012/0149843 A1 Patent Application Publication Jun. 14, 2012 Sheet 21 of 27 US 2012/0149843 A1 Patent Application Publication Jun. 14, 2012 Sheet 22 of 27 US 2012/0149843 A1 X TT Assay Patent Application Publication Jun. 14, 2012 Sheet 23 of 27 US 2012/0149843 A1 ig. 22A is go is: 8: . .x : o.3s to is x : xi x i: it wittees ig. 228 is grox s 0.85 ..is is s 8: ine wintes Patent Application Publication Jun. 14, 2012 Sheet 24 of 27 US 2012/0149843 A1 Fig. 23. : : : :x:8 : : : : *:38: 8+ Corp. : : I 8:888 : 3 8 : &g: .338g x838g 88: 8:88:8 Fig. 23B : & W Fiters Fibers + Corp S:38:88. : 3. : 3. ..: i: Kickey &rarr restine Patent Application Publication Jun. 14, 2012 Sheet 25 of 27 US 2012/0149843 A1 Fig. 3 8 &:88 sk:xxx& 8:::::::::::::::: -w Disra N s :::::::::::::::: : &ga:::::::::::::::::::::: N ::::::: Patent Application Publication Jun. 14, 2012 Sheet 26 of 27 US 2012/0149843 A1 : : 88: 8. : ::igi: s 8: 0.8 8 -88.88, 8-3-8:::::::::::::wa & &so.6 . i. 8 8:38.88:::::::::::: 8 *:::::::::::::::::::::: .gs: & "is fire in Patent Application Publication Jun. 14, 2012 Sheet 27 of 27 US 2012/0149843 A1 &xtix. 888xy 88 AA a 88: too 8- + xixxyge it ki O. ni. *:: * Kiky:8: 2 * 0.0 inv { { 0.1 ! . 5 to 15 8. P. s r. sson at Tine (min. {xy 88xy:8-2 sixy-8- US 2012/0149843 A1 Jun. 14, 2012 NANOFIBERS AND MORPHOLOGY BRIEF DESCRIPTION OF THE DRAWINGS SHIFTING MICELLES 0009 FIG. 1 depicts DNA-programmed lipid phase tran CROSS-REFERENCES TO RELATED sitions. DNA-programmed lipid assembles to form spherical APPLICATIONS lamellar vesicles capable of Switching phase to form Small 0001. This application is a continuation of PCT/US2010/ spherical micelles in a fully reversible fashion via DNA 044321, filed Aug. 3, 2010, which claims the benefit of U.S. hybridization (+DNA) and strand invasion (+DNA) cycles. Application Nos. 61/230.924, filed Aug. 3, 2009 and 61/316, Sequences: DNA (SEQID NO:1); DNA (SEQID NO:2). 325, filed Mar. 22, 2010, each of which is incorporated by 0010 FIGS. 2A-2F depict characterization of unilamellar reference in its entirety and for all purposes. vesicle structures formed from the self-assembly of DNA lipid in aqueous solution. FIGS. 2A-2B: Cryogenic-TEM REFERENCE TO A “SEQUENCE LISTING. A (cryo-TEM) images showing unilamellar bilayer morphol TABLE, ORACOMPUTER PROGRAM LISTING ogy of the vesicles at different scales of magnification. The APPENDIX SUBMITTED AS ANASCII TEXT scales for FIGS. 2A-2B are provided in the figures. FIGS. FILE 2C-2D: SEM of vesicles at scales depicted in the figures. FIG. 0002. The Sequence Listing written in file 88654 2E: AFM depiction of vesicle structures dry, on a mica sur 830139 ST25.TXT, created on Jan. 25, 2012, 10,939 bytes, face. FIG.2F: AFM data showing the flattened height profile machine format IBM-PC, MS-Windows operating system, is of the vesicle structures provided in FIG. 2E. hereby incorporated by reference. (0011 FIGS. 3A-3C depict DNA-directed vesicle to micelle phase transition. FIG.3A: FIG. 3A depicts cartoon of BACKGROUND OF THE INVENTION phase transition reaction and results monitored by DLS. “D,” 0003 Various non-informational, non-programmable refers to Hydrodynamic Diameter). FIG. 3B: Spherical nanoparticles have been known in the art, Such as those dis micelles monitored by TEM (negative stain). FIG. 3C: closed in Zhang, et al., Science 272:1777-1779, 1996; LaRue Vesicles monitors by TEM (negative stain). Experimental et al., Macromolecules 39:309-314, 2006: Ishihara et al., conditions: Tris (pH 7.4, 50 mM), MgCl, (50 mM), DNA Chem. Eur: J. 13:4560-4570, 2007; Kim et al., Angew: Chem., lipid (1 uM), DNA (2 uM), room temperature. Int. Ed 46:5779-5782, 2007: Li et al., Macromolecules (0012 FIGS. 4A-4H depict specificity and reversibility of 41:6605-6607, 2008; Roy et al., Chem. Commun. 2106-2108, DNA-programmed phase shifting. Scale bar-1 lum. Two dif 2009; and Fernyhough et al., Soft Matter 5:1674-1682, 2009. ferent DNA-lipids were 3'-labeled with two different dyes: There is a need in the art for micelles that are capable of DNA-Fluorescein and DNA-Rhodamine. All fluorescence changing morphology in a predictable or programmable way. images are red/green channel merges. FIG. 4H: FIG. 4H Provided herein are solutions to these and other problems in depicts a cartoon reaction scheme having reacting species the art. corresponding to each of the images set forth in FIGS. 4A-4F, as indicated by proximity of the reacting species to FIGS. BRIEF SUMMARY OF THE INVENTION 4A-4F. Legend for FIG. 4H: Green fluorescence: gray; red 0004 Provided herein, inter alia, are novel micelles fluorescence: crosshatched; yellow fluorescence: stippled. capable of changing morphology (e.g. shape) in a controlled FIG. 4A: Representative bright field image of labeled DNA manner upon application of the appropriate stimulus as well lipid assemblies. FIG. 4B: DNA-Rhodamine hybridizes to as amphiphilic coated metal nanofibers. The micelles may be DNAs resulting in observed (i.e., green) fluorescence only. used in a variety of chemical, pharmaceutical and electronic FIG. 4C: DNA (complementary to DNAs) causes mixing of applications as described herein. the two Surfactants to give a colocalized signal (i.e., yellow 0005. In one aspect, a micelle is provided that includes a signal) from both dyes. FIG. 4D: DNA-Fluorescein hybrid plurality of aggregated brush copolymers having a hydro izes to DNA to generate micelles resulting in observed (i.e., philic portion and a hydrophobic portion: red) fluorescence only.
Recommended publications
  • Serine Proteases with Altered Sensitivity to Activity-Modulating
    (19) & (11) EP 2 045 321 A2 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 08.04.2009 Bulletin 2009/15 C12N 9/00 (2006.01) C12N 15/00 (2006.01) C12Q 1/37 (2006.01) (21) Application number: 09150549.5 (22) Date of filing: 26.05.2006 (84) Designated Contracting States: • Haupts, Ulrich AT BE BG CH CY CZ DE DK EE ES FI FR GB GR 51519 Odenthal (DE) HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI • Coco, Wayne SK TR 50737 Köln (DE) •Tebbe, Jan (30) Priority: 27.05.2005 EP 05104543 50733 Köln (DE) • Votsmeier, Christian (62) Document number(s) of the earlier application(s) in 50259 Pulheim (DE) accordance with Art. 76 EPC: • Scheidig, Andreas 06763303.2 / 1 883 696 50823 Köln (DE) (71) Applicant: Direvo Biotech AG (74) Representative: von Kreisler Selting Werner 50829 Köln (DE) Patentanwälte P.O. Box 10 22 41 (72) Inventors: 50462 Köln (DE) • Koltermann, André 82057 Icking (DE) Remarks: • Kettling, Ulrich This application was filed on 14-01-2009 as a 81477 München (DE) divisional application to the application mentioned under INID code 62. (54) Serine proteases with altered sensitivity to activity-modulating substances (57) The present invention provides variants of ser- screening of the library in the presence of one or several ine proteases of the S1 class with altered sensitivity to activity-modulating substances, selection of variants with one or more activity-modulating substances. A method altered sensitivity to one or several activity-modulating for the generation of such proteases is disclosed, com- substances and isolation of those polynucleotide se- prising the provision of a protease library encoding poly- quences that encode for the selected variants.
    [Show full text]
  • RSC Advances
    RSC Advances PAPER View Article Online View Journal | View Issue Experimental identification and computational characterization of a novel extracellular Cite this: RSC Adv.,2017,7,13928 metalloproteinase produced by Clostridium sordellii† Michael J. Aldape,*ab Aoxiang Tao,c Dustin D. Heeney,a Eric R. McIndoo,a John M. Frencha and Dong Xu*c Clostridium sordellii is a lethal pathogen for both animals and humans. Severe capillary leakage, toxic shock syndrome, and an extreme leukemoid reaction (LR), are hallmark features of C. sordellii infections and contribute to its high mortality rate. Here we report the discovery of a previously unknown and uncharacterized metalloproteinase of C. sordellii (referred as Mcs1) that cleaves human vascular cell adhesion molecule (VCAM)-1 in vitro, an adhesion molecule critical to hematopoietic precursor retention and leukocyte diapedesis. We successfully identified the open reading frame encoding Mcs1 within Creative Commons Attribution-NonCommercial 3.0 Unported Licence. the ATCC 9714 genome and developed an Dmcs1 mutant strain using the ClosTron mutagenesis technology. No VCAM-1 proteolysis was observed from exotoxins collected from mutant strain cultures. Using advanced protein structural modeling and molecular dynamics simulation techniques, the 3D molecular structure and conformational features of Mcs1 were also characterized. Our data demonstrates that Mcs1 proteolytic activity is controlled by the electrostatic interactions between Glu113 and Arg227 residues and the gating motions within its cleft region. This pilot interdisciplinary investigation provided crucial experimental evidence of the existence of Mcs1 in C. sordellii and Received 2nd December 2016 molecular insights into its 3D structure and proteolytic activity. These findings have the potential to help Accepted 22nd February 2017 This article is licensed under a advance new therapeutics and diagnostics against deadly C.
    [Show full text]
  • Supplementary Materials
    Supplementary materials Supplementary Table S1: MGNC compound library Ingredien Molecule Caco- Mol ID MW AlogP OB (%) BBB DL FASA- HL t Name Name 2 shengdi MOL012254 campesterol 400.8 7.63 37.58 1.34 0.98 0.7 0.21 20.2 shengdi MOL000519 coniferin 314.4 3.16 31.11 0.42 -0.2 0.3 0.27 74.6 beta- shengdi MOL000359 414.8 8.08 36.91 1.32 0.99 0.8 0.23 20.2 sitosterol pachymic shengdi MOL000289 528.9 6.54 33.63 0.1 -0.6 0.8 0 9.27 acid Poricoic acid shengdi MOL000291 484.7 5.64 30.52 -0.08 -0.9 0.8 0 8.67 B Chrysanthem shengdi MOL004492 585 8.24 38.72 0.51 -1 0.6 0.3 17.5 axanthin 20- shengdi MOL011455 Hexadecano 418.6 1.91 32.7 -0.24 -0.4 0.7 0.29 104 ylingenol huanglian MOL001454 berberine 336.4 3.45 36.86 1.24 0.57 0.8 0.19 6.57 huanglian MOL013352 Obacunone 454.6 2.68 43.29 0.01 -0.4 0.8 0.31 -13 huanglian MOL002894 berberrubine 322.4 3.2 35.74 1.07 0.17 0.7 0.24 6.46 huanglian MOL002897 epiberberine 336.4 3.45 43.09 1.17 0.4 0.8 0.19 6.1 huanglian MOL002903 (R)-Canadine 339.4 3.4 55.37 1.04 0.57 0.8 0.2 6.41 huanglian MOL002904 Berlambine 351.4 2.49 36.68 0.97 0.17 0.8 0.28 7.33 Corchorosid huanglian MOL002907 404.6 1.34 105 -0.91 -1.3 0.8 0.29 6.68 e A_qt Magnogrand huanglian MOL000622 266.4 1.18 63.71 0.02 -0.2 0.2 0.3 3.17 iolide huanglian MOL000762 Palmidin A 510.5 4.52 35.36 -0.38 -1.5 0.7 0.39 33.2 huanglian MOL000785 palmatine 352.4 3.65 64.6 1.33 0.37 0.7 0.13 2.25 huanglian MOL000098 quercetin 302.3 1.5 46.43 0.05 -0.8 0.3 0.38 14.4 huanglian MOL001458 coptisine 320.3 3.25 30.67 1.21 0.32 0.9 0.26 9.33 huanglian MOL002668 Worenine
    [Show full text]
  • Collection of Information on Enzymes a Great Deal of Additional Information on the European Union Is Available on the Internet
    European Commission Collection of information on enzymes A great deal of additional information on the European Union is available on the Internet. It can be accessed through the Europa server (http://europa.eu.int). Luxembourg: Office for Official Publications of the European Communities, 2002 ISBN 92-894-4218-2 © European Communities, 2002 Reproduction is authorised provided the source is acknowledged. Final Report „Collection of Information on Enzymes“ Contract No B4-3040/2000/278245/MAR/E2 in co-operation between the Federal Environment Agency Austria Spittelauer Lände 5, A-1090 Vienna, http://www.ubavie.gv.at and the Inter-University Research Center for Technology, Work and Culture (IFF/IFZ) Schlögelgasse 2, A-8010 Graz, http://www.ifz.tu-graz.ac.at PROJECT TEAM (VIENNA / GRAZ) Werner Aberer c Maria Hahn a Manfred Klade b Uli Seebacher b Armin Spök (Co-ordinator Graz) b Karoline Wallner a Helmut Witzani (Co-ordinator Vienna) a a Austrian Federal Environmental Agency (UBA), Vienna b Inter-University Research Center for Technology, Work, and Culture - IFF/IFZ, Graz c University of Graz, Department of Dermatology, Division of Environmental Dermatology, Graz Executive Summary 5 EXECUTIVE SUMMARY Technical Aspects of Enzymes (Chapter 3) Application of enzymes (Section 3.2) Enzymes are applied in various areas of application, the most important ones are technical use, manufacturing of food and feedstuff, cosmetics, medicinal products and as tools for re- search and development. Enzymatic processes - usually carried out under mild conditions - are often replacing steps in traditional chemical processes which were carried out under harsh industrial environments (temperature, pressures, pH, chemicals). Technical enzymes are applied in detergents, for pulp and paper applications, in textile manufacturing, leather industry, for fuel production and for the production of pharmaceuticals and chiral substances in the chemical industry.
    [Show full text]
  • Airway Microbiota Signals Anabolic and Catabolic Remodeling in the Transplanted Lung
    Airway microbiota signals anabolic and catabolic remodeling in the transplanted lung Stephane Mouraux, MD,a* Eric Bernasconi, PhD,a*Celine Pattaroni, MSc,a Angela Koutsokera, MD, PhD,a John-David Aubert, MD,a Johanna Claustre, MD,b,c,d Christophe Pison, MD, PhD,b,c,d Pierre-Joseph Royer, PhD,e Antoine Magnan, MD,e Romain Kessler, MD, PhD,f Christian Benden, MD, FCCP,g Paola M. Soccal, MD,h Benjamin J. Marsland, PhD,aà and Laurent P. Nicod, MD,aà on behalf of the SysCLAD Consortium§ Lausanne, Zurich, and Geneva, Switzerland; and Grenoble, Saint Martin d’Heres, Nantes, and Strasbourg, France GRAPHICAL ABSTRACT Microbiota Impact on Airway Remodeling Microbiota: Prevotella, Streptococcus Veillonella, Neisseria Lung Bacterial transplant communities Staphylococcus, Pseudomonas Haemophilus, Corynebacterium Broncho- alveolar Host: M2 macrophage Myofibroblast lavage Cell differential M1 macrophage Neutrophil Fibroblast Gene Platelet-derived growth factor Thrombospondin expression Matrix metalloproteinases Osteopontin Pulmonary alveolus Capillary Extracellular Matrix Collagen Anabolic Fibronectin Remodeling Homeostasis Catabolic Remodeling Type I cell Type II cell Background: Homeostatic turnover of the extracellular matrix for a heterogeneous entity ultimately associated with conditions the structure and function of the healthy lung. In pathological airway and/or parenchyma remodeling. lung transplantation, long-term management remains limited Objective: This study assessed whether the local cross-talk by chronic lung allograft dysfunction, an umbrella term used between the pulmonary microbiota and host cells is a key From athe Service de Pneumologie, Centre Hospitalier Universitaire Vaudois, Lausanne; Thoracic Society for this work. E. Bernasconi’s institution received grant no. 305457, bthe Clinique Universitaire de Pneumologie, Pole^ Thorax et Vaisseaux, Centre Hospi- SysCLAD Consortium from European Commission FP7; grant no.
    [Show full text]
  • EUROPEAN COMMISSION Brussels, 28 April 2020 REGISTER of FOOD
    EUROPEAN COMMISSION DIRECTORATE-GENERAL FOR HEALTH AND FOOD SAFETY Food and feed safety, innovation Food processing technologies and novel foods Brussels, 28 April 2020 REGISTER OF FOOD ENZYMES TO BE CONSIDERED FOR INCLUSION IN THE UNION LIST Article 17 of Regulation (EC) No 1332/20081 provides for the establishment of a Register of all food enzymes to be considered for inclusion in the Union list. In accordance with that Article, the Register includes all applications which were submitted within the initial period fixed by that Regulation and which comply with the validity criteria laid down in accordance with Article 9(1) of (EC) No 1331/2008 establishing a common authorisation procedure for food additives, food enzymes and food flavourings2. The Register therefore lists all valid food enzyme applications submitted until 11 March 2015 except those withdrawn by the applicant before that date. Applications submitted after that date are not included in the Register but will be processed in accordance with the Common Authorisation Procedure. The entry of a food enzyme in the Register specifies the identification, the name, the source of the food enzyme as provided by the applicant and the EFSA question number under which the status of the Authority’s assessment can be followed3. As defined by Article 3 of Regulation (EC) No 1332/2008, ‘food enzyme’ subject to an entry in the Register, refers to a product that may contain more than one enzyme capable of catalysing a specific biochemical reaction. In the assessment process, such a food enzyme may be linked with several EFSA question numbers.
    [Show full text]
  • Enzymes in Fish and Seafood Processing
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Frontiers - Publisher Connector REVIEW published: 07 July 2016 doi: 10.3389/fbioe.2016.00059 Enzymes in Fish and Seafood Processing Pedro Fernandes1,2* 1 Department of Bioengineering, Institute for Biotechnology and Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal, 2 Faculdade de Engenharia, Universidade Lusófona de Humanidades e Tecnologias, Lisbon, Portugal Enzymes have been used for the production and processing of fish and seafood for several centuries in an empirical manner. In recent decades, a growing trend toward a rational and controlled application of enzymes for such goals has emerged. Underlying such pattern are, among others, the increasingly wider array of enzyme activities and enzyme sources, improved enzyme formulations, and enhanced requirements for cost-effective and environmentally friendly processes. The better use of enzyme action in fish- and seafood-related application has had a significant impact on fish-related indus- Edited by: Antonio Trincone, try. Thus, new products have surfaced, product quality has improved, more sustainable Istituto di Chimica Biomolecolare, processes have been developed, and innovative and reliable analytical techniques have Consiglio Nazionale delle Ricerche, been implemented. Recent development in these fields are presented and discussed, Italy and prospective developments are suggested. Reviewed by: Tania Primavera Pozzo Mendoza, Keywords: biocatalysis, biosensors, proteases, transglutaminases, lipases, oxidases University of California Davis, USA Helena M. Moreno Conde, Institute of Food Science, INTRODUCTION Technology and Nutrition (ICTAN), Spain Enzymes are key tools in biotechnology and related areas because of their catalytic nature (Fraatz *Correspondence: et al., 2014; Jemli et al., 2016).
    [Show full text]
  • Thermophiles and Thermozymes
    Thermophiles and Thermozymes Edited by María-Isabel González-Siso Printed Edition of the Special Issue Published in Microorganisms www.mdpi.com/journal/microorganisms Thermophiles and Thermozymes Thermophiles and Thermozymes Special Issue Editor Mar´ıa-Isabel Gonz´alez-Siso MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade Special Issue Editor Mar´ıa-Isabel Gonzalez-Siso´ Universidade da Coruna˜ Spain Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Microorganisms (ISSN 2076-2607) from 2018 to 2019 (available at: https://www.mdpi.com/journal/ microorganisms/special issues/thermophiles) For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03897-816-9 (Pbk) ISBN 978-3-03897-817-6 (PDF) c 2019 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Special Issue Editor ...................................... vii Mar´ıa-Isabel Gonz´alez-Siso Editorial for the Special Issue: Thermophiles and Thermozymes Reprinted from: Microorganisms 2019, 7, 62, doi:10.3390/microorganisms7030062 ........
    [Show full text]
  • (12) Patent Application Publication (10) Pub. No.: US 2004/0081648A1 Afeyan Et Al
    US 2004.008 1648A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2004/0081648A1 Afeyan et al. (43) Pub. Date: Apr. 29, 2004 (54) ADZYMES AND USES THEREOF Publication Classification (76) Inventors: Noubar B. Afeyan, Lexington, MA (51) Int. Cl." ............................. A61K 38/48; C12N 9/64 (US); Frank D. Lee, Chestnut Hill, MA (52) U.S. Cl. ......................................... 424/94.63; 435/226 (US); Gordon G. Wong, Brookline, MA (US); Ruchira Das Gupta, Auburndale, MA (US); Brian Baynes, (57) ABSTRACT Somerville, MA (US) Disclosed is a family of novel protein constructs, useful as Correspondence Address: drugs and for other purposes, termed “adzymes, comprising ROPES & GRAY LLP an address moiety and a catalytic domain. In Some types of disclosed adzymes, the address binds with a binding site on ONE INTERNATIONAL PLACE or in functional proximity to a targeted biomolecule, e.g., an BOSTON, MA 02110-2624 (US) extracellular targeted biomolecule, and is disposed adjacent (21) Appl. No.: 10/650,592 the catalytic domain So that its affinity Serves to confer a new Specificity to the catalytic domain by increasing the effective (22) Filed: Aug. 27, 2003 local concentration of the target in the vicinity of the catalytic domain. The present invention also provides phar Related U.S. Application Data maceutical compositions comprising these adzymes, meth ods of making adzymes, DNA's encoding adzymes or parts (60) Provisional application No. 60/406,517, filed on Aug. thereof, and methods of using adzymes, Such as for treating 27, 2002. Provisional application No. 60/423,754, human Subjects Suffering from a disease, Such as a disease filed on Nov.
    [Show full text]
  • Ext 43867.Pdf
    ISSN (Online) 2456 -1304 International Journal of Science, Engineering and Management (IJSEM) Vol 2, Issue 9, September 2017 A Comprehensive Review – Anatomical, Functional and Molecular profiling of honey bee wax moth Galleria mellonella [1] S. Pooja Sri , [2] S. Sribal Department of Genetic Engineering, Bharath University, Chennai - 600073, Tamil Nadu, India [email protected], [email protected] Abstract:-- The greater wax moth Galleria mellonella attracts the view of many researchers by their anatomical, functional and molecular profiling patterns. Mostly the larvae feeds on honey bee hive and Larvae of the greater wax moth Galleria mellonella have been shown to provide a useful insight into the pathogenesis model of a wide range of microbial infections including mammalian fungal (Fusarium oxysporum, Aspergillus fumigatus, Candida albicans) and bacterial pathogens, such as Staphylococcus aureus, Proteus vulgaris, Serratia marcescens, Pseudomonas aeruginosa, Listeria monocytogenes or Enterococcus faecalis [1]. Like mammals, insects possess a complex innate immune system. In addition, analogies are found between the epithelial cells of insect larval midguts and intestinal cells of mammalian digestive systems. Finally, several basic components essential for the bacterial infection process such as cell adhesion, resistance to antimicrobial peptides, tissue degradation and adaptation to oxidative stress are likely to be important in both insects and mammals [2]. Thus, insects are polyvalent tools for the identification and characterization of microbial virulence factors involved in mammalian infections [1]. In 1934, many researchers focused on studying the larval body fluids to understand the biochemical mechanism of the honey bee moth. The larva of Galleria mellonella is available as in commercial for feeding the predatory insects.
    [Show full text]
  • 12) United States Patent (10
    US007635572B2 (12) UnitedO States Patent (10) Patent No.: US 7,635,572 B2 Zhou et al. (45) Date of Patent: Dec. 22, 2009 (54) METHODS FOR CONDUCTING ASSAYS FOR 5,506,121 A 4/1996 Skerra et al. ENZYME ACTIVITY ON PROTEIN 5,510,270 A 4/1996 Fodor et al. MICROARRAYS 5,512,492 A 4/1996 Herron et al. 5,516,635 A 5/1996 Ekins et al. (75) Inventors: Fang X. Zhou, New Haven, CT (US); 5,532,128 A 7/1996 Eggers Barry Schweitzer, Cheshire, CT (US) 5,538,897 A 7/1996 Yates, III et al. s s 5,541,070 A 7/1996 Kauvar (73) Assignee: Life Technologies Corporation, .. S.E. al Carlsbad, CA (US) 5,585,069 A 12/1996 Zanzucchi et al. 5,585,639 A 12/1996 Dorsel et al. (*) Notice: Subject to any disclaimer, the term of this 5,593,838 A 1/1997 Zanzucchi et al. patent is extended or adjusted under 35 5,605,662 A 2f1997 Heller et al. U.S.C. 154(b) by 0 days. 5,620,850 A 4/1997 Bamdad et al. 5,624,711 A 4/1997 Sundberg et al. (21) Appl. No.: 10/865,431 5,627,369 A 5/1997 Vestal et al. 5,629,213 A 5/1997 Kornguth et al. (22) Filed: Jun. 9, 2004 (Continued) (65) Prior Publication Data FOREIGN PATENT DOCUMENTS US 2005/O118665 A1 Jun. 2, 2005 EP 596421 10, 1993 EP 0619321 12/1994 (51) Int. Cl. EP O664452 7, 1995 CI2O 1/50 (2006.01) EP O818467 1, 1998 (52) U.S.
    [Show full text]
  • (12) United States Patent (10) Patent No.: US 8,561,811 B2 Bluchel Et Al
    USOO8561811 B2 (12) United States Patent (10) Patent No.: US 8,561,811 B2 Bluchel et al. (45) Date of Patent: Oct. 22, 2013 (54) SUBSTRATE FOR IMMOBILIZING (56) References Cited FUNCTIONAL SUBSTANCES AND METHOD FOR PREPARING THE SAME U.S. PATENT DOCUMENTS 3,952,053 A 4, 1976 Brown, Jr. et al. (71) Applicants: Christian Gert Bluchel, Singapore 4.415,663 A 1 1/1983 Symon et al. (SG); Yanmei Wang, Singapore (SG) 4,576,928 A 3, 1986 Tani et al. 4.915,839 A 4, 1990 Marinaccio et al. (72) Inventors: Christian Gert Bluchel, Singapore 6,946,527 B2 9, 2005 Lemke et al. (SG); Yanmei Wang, Singapore (SG) FOREIGN PATENT DOCUMENTS (73) Assignee: Temasek Polytechnic, Singapore (SG) CN 101596422 A 12/2009 JP 2253813 A 10, 1990 (*) Notice: Subject to any disclaimer, the term of this JP 2258006 A 10, 1990 patent is extended or adjusted under 35 WO O2O2585 A2 1, 2002 U.S.C. 154(b) by 0 days. OTHER PUBLICATIONS (21) Appl. No.: 13/837,254 Inaternational Search Report for PCT/SG2011/000069 mailing date (22) Filed: Mar 15, 2013 of Apr. 12, 2011. Suen, Shing-Yi, et al. “Comparison of Ligand Density and Protein (65) Prior Publication Data Adsorption on Dye Affinity Membranes Using Difference Spacer Arms'. Separation Science and Technology, 35:1 (2000), pp. 69-87. US 2013/0210111A1 Aug. 15, 2013 Related U.S. Application Data Primary Examiner — Chester Barry (62) Division of application No. 13/580,055, filed as (74) Attorney, Agent, or Firm — Cantor Colburn LLP application No.
    [Show full text]