Molecular Phylogenetics of the Genus Piranga: Implications for Biogeography and the Evolution of Morphology and Behavior
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
SPLITS, LUMPS and SHUFFLES Splits, Lumps and Shuffles Alexander C
>> SPLITS, LUMPS AND SHUFFLES Splits, lumps and shuffles Alexander C. Lees This series focuses on recent taxonomic proposals—be they entirely new species, splits, lumps or reorganisations—that are likely to be of greatest interest to birders. This latest instalment includes a new Scytalopus tapaculo and a new subspecies of Three-striped Warbler, reviews of species limits in Grey-necked Wood Rails and Pearly Parakeets and comprehensive molecular studies of Buff-throated Woodcreepers, Sierra Finches, Red-crowned Ant Tanagers and Siskins. Get your lists out! Splits proposed for Grey- Pearly Parakeet is two species necked Wood Rails The three subspecies of Pearly Parakeet Pyrrhura lepida form a species complex with Crimson- The Grey-necked Wood Rail Aramides cajaneus bellied Parakeet P. perlata and replace each other is both the most widespread (occurring from geographically across a broad swathe of southern Mexico to Argentina) and the only polytypic Amazonia east of the Madeira river all the way member of its genus. Although all populations to the Atlantic Ocean. Understanding the nature are ‘diagnosable’ in having an entirely grey neck of this taxonomic variation is an important task, and contrasting chestnut chest, there is much as collectively their range sits astride much of variation in the colours of the nape, lower chest the Amazonian ‘Arc of Deforestation’ and the and mantle, differences amongst which have led to broadly-defined Brazilian endemic Pearly Parakeet the recognition of nine subspecies. Marcondes and is already considered to be globally Vulnerable. Silveira (2015) recently explored the taxonomy of Somenzari and Silveira (2015) recently investigated Grey-necked Wood Rails based on morphological the taxonomy of the three lepida subspecies (the and vocal characteristics using a sample of 800 nominate P. -
Predation on Vertebrates by Neotropical Passerine Birds Leonardo E
Lundiana 6(1):57-66, 2005 © 2005 Instituto de Ciências Biológicas - UFMG ISSN 1676-6180 Predation on vertebrates by Neotropical passerine birds Leonardo E. Lopes1,2, Alexandre M. Fernandes1,3 & Miguel Â. Marini1,4 1 Depto. de Biologia Geral, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, 31270-910, Belo Horizonte, MG, Brazil. 2 Current address: Lab. de Ornitologia, Depto. de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, Pampulha, 31270-910, Belo Horizonte, MG, Brazil. E-mail: [email protected]. 3 Current address: Coleções Zoológicas, Aves, Instituto Nacional de Pesquisas da Amazônia, Avenida André Araújo, 2936, INPA II, 69083-000, Manaus, AM, Brazil. E-mail: [email protected]. 4 Current address: Lab. de Ornitologia, Depto. de Zoologia, Instituto de Biologia, Universidade de Brasília, 70910-900, Brasília, DF, Brazil. E-mail: [email protected] Abstract We investigated if passerine birds act as important predators of small vertebrates within the Neotropics. We surveyed published studies on bird diets, and information on labels of museum specimens, compiling data on the contents of 5,221 stomachs. Eighteen samples (0.3%) presented evidence of predation on vertebrates. Our bibliographic survey also provided records of 203 passerine species preying upon vertebrates, mainly frogs and lizards. Our data suggest that vertebrate predation by passerines is relatively uncommon in the Neotropics and not characteristic of any family. On the other hand, although rare, the ability to prey on vertebrates seems to be widely distributed among Neotropical passerines, which may respond opportunistically to the stimulus of a potential food item. -
Defining a Monophyletic Cardinalini
Available online at www.sciencedirect.com Molecular Phylogenetics and Evolution 45 (2007) 1014–1032 www.elsevier.com/locate/ympev Defining a monophyletic Cardinalini: A molecular perspective John Klicka a,*, Kevin Burns b, Garth M. Spellman a,1 a Barrick Museum of Natural History, Box 454012, University of Nevada Las Vegas, 4505 Maryland, Parkway, Las Vegas, NV 89154-4012, USA b Department of Biology, San Diego State University, San Diego, CA 92182-4614, USA Received 28 March 2007; revised 29 June 2007; accepted 10 July 2007 Available online 19 July 2007 Abstract Within the New World nine-primaried oscine assemblage, feeding morphology and behavior have long been used as a guideline for assigning membership to subgroups. For example, birds with stout, conical bills capable of crushing heavy seeds have generally been placed within the tribe Cardinalini (cardinal-grosbeaks). Many workers have tried to characterize this group more definitively, using a variety of morphological characters; however, the characters used often conflicted with one another. Previous molecular studies addressing the monophyly of Cardinalini have had only limited sampling within the group. In this study, we analyze mtDNA sequence data from all genera and 34 of the 42 Cardinalini species (sensu [Sibley, C.G., Monroe, B.L., 1990. Distribution and Taxonomy of the Birds of the World, Yale University Press, New Haven, CT]) to address the monophyly of the group and to reconstruct the most com- plete phylogeny of this tribe published to date. We found strong support for a redefined Cardinalini that now includes some members previously placed within Thraupini (tanagers; the genera Piranga, Habia, Chlorothraupis, and Amaurospiza) and some members previ- ously placed within the Parulini (wood-warblers; the genus Granatellus). -
Molt Strategies of Ten Neotropical Forest Passerine Species Author(S): Santiago X
Molt strategies of ten neotropical forest passerine species Author(s): Santiago X. Guallar , Angelina Ruiz-Sánchez , Rafael Rueda- Hernández , and Peter Pyle Source: The Wilson Journal of Ornithology, 128(3):543-555. Published By: The Wilson Ornithological Society DOI: http://dx.doi.org/10.1676/1559-4491-128.3.543 URL: http://www.bioone.org/doi/full/10.1676/1559-4491-128.3.543 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/ terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. The Wilson Journal of Ornithology 128(3):543–555, 2016 MOLT STRATEGIES OF TEN NEOTROPICAL FOREST PASSERINE SPECIES SANTIAGO X. GUALLAR,1,4 ANGELINA RUIZ-SANCHEZ,´ 2 RAFAEL RUEDA- HERNANDEZ,´ 2 AND PETER PYLE3 ABSTRACT.—We describe the number of inserted molts in the annual molt cycle and topographies resulting from the preformative molt in 10 Neotropical forest passerine species. Seven species showed two annual molt peaks, one in early spring (Mar–Apr) and one in late summer (Jul–Sept). -
Genome Reveals Candidate Regulatory Regions for Sexually Dichromatic Red Plumage Coloration
GENOME REPORT De Novo Assembly of the Northern Cardinal (Cardinalis cardinalis) Genome Reveals Candidate Regulatory Regions for Sexually Dichromatic Red Plumage Coloration Simon Yung Wa Sin,*,†,1 Lily Lu,* and Scott V. Edwards* *Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, 26 Oxford Street, Cambridge, MA 02138 and †School of Biological Sciences, The University of Hong Kong, Pok Fu Lam Road, Hong Kong ORCID IDs: 0000-0003-2484-2897 (S.Y.W.S.); 0000-0003-2535-6217 (S.V.E.) ABSTRACT Northern cardinals (Cardinalis cardinalis) are common, mid-sized passerines widely distrib- KEYWORDS uted in North America. As an iconic species with strong sexual dichromatism, it has been the focus of AllPaths-LG extensive ecological and evolutionary research, yet genomic studies investigating the evolution of Cis-regulatory genotype–phenotype association of plumage coloration and dichromatism are lacking. Here we present elements a new, highly-contiguous assembly for C. cardinalis. We generated a 1.1 Gb assembly comprised of CYP2J19 gene 4,762 scaffolds, with a scaffold N50 of 3.6 Mb, a contig N50 of 114.4 kb and a longest scaffold of 19.7 Mb. Ketocarotenoid We identified 93.5% complete and single-copy orthologs from an Aves datasetusingBUSCO,dem- pigments onstrating high completeness of the genome assembly. We annotated the genomic region comprising Transcription the CYP2J19 gene, which plays a pivotal role in the red coloration in birds. Comparative analyses factors demonstrated non-exonic regions unique to the CYP2J19 gene in passerines and a long insertion upstream of the gene in C. cardinalis. Transcription factor binding motifs discovered in the unique insertion region in C. -
Colombia: Bogota, Eastern Andes and the Magdalena Valley
COLOMBIA: BOGOTA, EASTERN ANDES AND THE MAGDALENA VALLEY FEBRUARY 25–MARCH 11, 2020 Red-rumped Bush-Tyrant. Photo: S. Hilty LEADERS: STEVE HILTY & DIEGO CUERVO LIST COMPILED BY: STEVE HILTY VICTOR EMANUEL NATURE TOURS, INC. 2525 WALLINGWOOD DRIVE, SUITE 1003 AUSTIN, TEXAS 78746 WWW.VENTBIRD.COM COLOMBIA: BOGOTA, EASTERN ANDES AND THE MAGDALENA VALLEY February 25–March 11, 2020 By Steve Hilty Sumapaz National Park, Colombia. Photo S. Hilty With all the traffic in Bogotá, a bustling city of more than eight million people, it may have seemed initially that birding in Colombia was as much about how to get in and out of the city as birding, but our days afield soon dispelled that notion. Despite the traffic and immense number of trucks and buses, Leonardo, our driver, was one of the best and most efficient I’ve ever had in negotiating Colombian roads and traffic. We began birding at Laguna Tabacal, a quiet (during weekdays) rural lake and wooded area about an hour and a half west of Bogotá and at considerably lower elevation. This is an excellent place for an introduction to commoner Colombia birds of lower montane elevations. Among these were flycatchers, wrens, and several kinds of tanagers, as well as such specialties as Moustached Puffbird and Speckle-breasted Wren, and later a blizzard of hummingbirds at the Jardín Encantado, before returning to Bogotá. We followed this opening day with visits to two high elevation sites, first Chingaza National Park and then to Sumapaz National Park. Both sites are floristically unique, landscapes all or mostly above treeline, and in many ways so otherwordly as to be beyond description. -
NEWS and NOTES by Paul Hess
NEWS AND NOTES by Paul Hess cise knowledge of just how Zino’s and Fea’s can be sep - Fea’s or Zino’s Petrel? arated.” (April 2000, pp. 110–112) Official uncertainty persists. Fea’s Petrel remains “hypo - • In an extensive assessment of gadfly petrels off North thetical” in the American Ornithologists’ Union Check-list Carolina, J. Brian Patteson and Edward S. Brinkley re - of North American Birds , and “Fea’s/Zino’s Petrel” remains a port that “we are able to confirm at least some of these single tick in the ABA Checklist . Thus, a long-standing con - as Fea’s Petrels.” (December 2004, pp. 586–596) troversy still shadows dozens of observations off our At - A new analysis may not dispel doubts about identification lantic Coast: Can Fea’s Petrel and Zino’s Petrel be separated at sea, but that is not the authors’ goal. Rather, Francis at sea, even in good photographs? Zino, Ruth Brown, and Manuel Biscoito want to reaffirm in The quarrel has played out colorfully in Birding , having 2008 that Zino’s Petrel is a distinct species warranting con - been addressed both in several ABA Checklist Committee tinued conservation efforts to protect the endangered reports <aba.org/checklist/reports.html> and in various ar - breeding population estimated at 65–80 pairs endemic to ticles and letters to the editor. Here are highlights: Madeira Island ( Ibis 150:326–334). • The ABA decides not to accept Fea’s, then known as Cape Verde Islands Petrel, because “the probability of resolving the identity of these birds beyond question appears to be low.” (Oc - tober 1996, pp. -
Colombia, February-March 2016
Tropical Birding Trip Report Colombia, February-March 2016 Colombia February 25th to March 10th, 2016 TOUR LEADER: Nick Athanas Report and photos by Nick Athanas White-whiskered Spinetail – bird of the trip! It had been a while since I had guided a Colombia trip, and I had forgotten how neat the birds were! This two week customized tour combined a Northern Colombia trip with some of the best sites in Central Colombia. The weather was beautiful, the birds were spectacular and cooperative, and most importantly we had a fun and friendly group; we all had a blast. Custom trips are a great option for groups of friends that like to travel together, and it really worked well this time. I really love that White-whiskered Spinetail was voted “bird of the trip” – it’s the only time I can remember a spinetail winning that honor – it’s an often unappreciated group, but this one is really special and we had point-blank views. Runner up was Santa Marta Antbird, which was also highly deserving as one of the newest splits of a truly www.tropicalbirding.com +1-409-515-9110 [email protected] Tropical Birding Trip Report Colombia, February-March 2016 amazing genus. Other favorites were Golden-winged Sparrow, Russet-throated Puffbird, Scarlet Ibis, Turquoise Dacnis, Blue-billed Curassow, Red-bellied Grackle, Sword-billed Hummer, Crested Owl, Chestnut Piculet, Striped Manakin, and shockingly, even a couple of tapaculos, which impressed some by showing amazingly well. We started off in the “megapolis” of Bogotá, which served as our base for the first few nights as we made day trips to nearby sites in the eastern cordillera of the Andes. -
Species Limits and Taxonomy in Birds
applyparastyle "fig//caption/p[1]" parastyle "FigCapt" AmericanOrnithology.org Volume 138, 2021, pp. 1–15 DOI: 10.1093/ornithology/ukab009 SPECIAL FEATURE: Species Limits and Taxonomy in Birds Downloaded from https://academic.oup.com/auk/advance-article/doi/10.1093/ornithology/ukab009/6222128 by Louisiana State University user on 12 April 2021 Integrative taxonomy and geographic sampling underlie successful species delimitation Carla Cicero,1,*, Nicholas A. Mason,1,2, Rosa Alicia Jiménez,1,3,4, Daniel R. Wait,1,3 Cynthia Y. Wang- Claypool,1,3 and Rauri C. K. Bowie1,3, 1 Museum of Vertebrate Zoology, University of California, Berkeley, California, USA 2 Museum of Natural Science and Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, USA 3 Department of Integrative Biology, University of California, Berkeley, California, USA 4 Escuela de Biología, Universidad de San Carlos de Guatemala, Guatemala * Corresponding author: [email protected] Submission Date: February 22, 2020; Editorial Acceptance Date: January 15, 2021; Published April 12, 2021 ABSTRACT Species delimitation requires a broad assessment of population-level variation using multiple lines of evidence, a process known as integrative taxonomy. More specifically, studies of species limits must address underlying questions of what limits the distribution of populations, how traits vary in association with different environments, and whether the observed trait differences may lead to speciation through reproductive isolation. While genomic data have revolutionized the process of delimiting species, such data should be analyzed along with phenotypic, behavioral, and ecological traits that shape individuals across geographic and environmental space. The integration of multiple traits promotes taxonomic stability and should be a major guiding principle for species delimitation. -
Brazil I & II Trip Report
North Eastern Brazil I & II Trip Report 20th October to 15th November 2013 Araripe Manakin by Forrest Rowland Trip report compiled by Tour leaderForrest Rowland NE Brazil I tour Top 10 birds as voted by participants: 1. Lear’s Macaw 2. Araripe Manakin 3. Jandaya Parakeet Trip Report - RBT NE Brazil I & II 2013 2 4. Fringe-backed Fire-eye 5. Great Xenops 6. Seven-coloured Tanager 7. Ash-throated Crake 8. Stripe-backed Antbird 9. Scarlet-throated Tanager 10. Blue-winged Macaw NE Brazil II tour Top 10 as voted by participants: 1. Ochre-rumped Antbird 2. Giant Snipe 3. Ruby-topaz Hummingbird (Ruby Topaz) 4. Hooded Visorbearer 5. Slender Antbird 6. Collared Crescentchest 7. White-collared Foliage-Gleaner 8. White-eared Puffbird 9. Masked Duck 10. Pygmy Nightjar NE Brazil is finally gaining the notoriety it deserves among wildlife enthusiasts, nature lovers, and, of course, birders! The variety of habitats that its vast borders encompass, hosting more than 600 bird species (including over 100 endemics), range from lush coastal rainforests, to xerophytic desert-like scrub in the north, across the vast cerrado full of microhabitats both known as well as entirely unexplored. This incredible diversity, combined with emerging infrastructure, a burgeoning economy paying more attention to eco-tourism, and a vibrant, dynamic culture makes NE Brazil one of the planet’s most unique and rewarding destinations to explore. The various destinations we visited on these tours allowed us time in all of these diverse habitat types – and some in the Lear’s Macaws by Forrest Rowland most spectacular fashion! Our List Totals of 501 birds and 15 species of mammals (including such specials as Lear’s Macaw, Araripe Manakin, Bahia Tapaculo, and Pink-legged Graveteiro) reflect not only how diverse the region is, but just how rich it can be from day to day. -
Evolution of the Preformative Molt in Cardinalidae Correlates With
AmericanOrnithology.org Volume 138, 2021, pp. 1–14 DOI: 10.1093/ornithology/ukaa070 RESEARCH ARTICLE Evolution of the preformative molt in Cardinalidae correlates with transitions from forest to open habitats Downloaded from https://academic.oup.com/auk/advance-article/doi/10.1093/ornithology/ukaa070/6124501 by guest on 31 January 2021 Santi Guallar,1,2,*, Rafael Rueda-Hernández,3, and Peter Pyle4 1 Department of Animal Biology, University of Barcelona, Barcelona, Spain 2 Department de Vertebrats, Museu de Ciències Naturals de Barcelona, Barcelona, Spain 3 Departamento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México, México DF, México 4 Institute for Bird Populations, Point Reyes Station, California, USA * Corresponding author: [email protected] Submission Date: April 9, 2020; Editorial Acceptance Date: August 12, 2020; Published January 30, 2021 ABSTRACT We explored adaptive factors affecting the preformative molt in the passerine family Cardinalidae, and concluded that the ancestor inhabited forest habitats and underwent a partial preformative molt that included wing coverts but not primaries. Later radiations within the family appeared to be characterized by transitions from forests toward more open habitats, and such transitions also correlated positively with increased preformative molt investment, plumage signaling, and flight. While previous studies had highlighted the role of time and energy constraints in the evolution of the preformative molt in passerines, we conclude that adaptation to the physical environment has had a greater influence than constraints on the evolution of this molt in Cardinalidae. Using molt data from 430 individuals from 41 of the 51 Cardinalidae species, we tested whether social and environmental factors (delayed plumage maturation and habitat openness), as well as that of physiological and time constraints (body mass, migration distance, and breeding latitude), have influenced the evolution of the preformative molt in this family. -
The Function of Seasonal Song in a Tropical Resident Species, the Red-Throated Ant-Tanager (Habia Fuscicauda)
J Ornithol DOI 10.1007/s10336-014-1139-4 ORIGINAL ARTICLE The function of seasonal song in a tropical resident species, the Red-throated Ant-tanager (Habia fuscicauda) Ioana Chiver • Bridget J. M. Stutchbury • Eugene S. Morton Received: 18 December 2013 / Revised: 21 October 2014 / Accepted: 11 November 2014 Ó Dt. Ornithologen-Gesellschaft e.V. 2014 Abstract Recent studies of tropical birds with year-round associated with female egg-laying date, indicating also a territoriality indicate that song rate is relatively low year- role in within-pair coordination of reproduction. Our round in association with lower seasonality and relatively results suggest that high song output during the breeding stable social environment over the year. We examined season may be more common in omnivorous species that seasonal variation in the song rate of Red-throated Ant- experience increased seasonality and that it may be indic- tanagers (Habia fuscicauda), a socially monogamous spe- ative of an extra-pair mating system. More studies of cies in which males predominantly sing during the breed- species with diverse life histories are needed to examine ing season, to determine to what extent increased song rate the ecological conditions that explain interspecific varia- is driven by (1) increased territory defense, (2) pair coor- tion in song output. dination of nest initiation, and (3) competition for extra- pair mating opportunities. Song was infrequent during the Keywords Extra-pair mating Á Neotropics Á Pair non-breeding season, increased dramatically prior to nest- coordination Á Seasonality Á Song output Á Year-round ing (17 % time spent singing), and increased even more so territoriality during nesting (32 % time spent singing).