How Many Kingdoms of Life? Eukaryotic Phylogeny and Philosophy of Systematics
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Download This Publication (PDF File)
PUBLIC LIBRARY of SCIENCE | plosgenetics.org | ISSN 1553-7390 | Volume 2 | Issue 12 | DECEMBER 2006 GENETICS PUBLIC LIBRARY of SCIENCE www.plosgenetics.org Volume 2 | Issue 12 | DECEMBER 2006 Interview Review Knight in Common Armor: 1949 Unraveling the Genetics 1956 An Interview with Sir John Sulston e225 of Human Obesity e188 Jane Gitschier David M. Mutch, Karine Clément Research Articles Natural Variants of AtHKT1 1964 The Complete Genome 2039 Enhance Na+ Accumulation e210 Sequence and Comparative e206 in Two Wild Populations of Genome Analysis of the High Arabidopsis Pathogenicity Yersinia Ana Rus, Ivan Baxter, enterocolitica Strain 8081 Balasubramaniam Muthukumar, Nicholas R. Thomson, Sarah Jeff Gustin, Brett Lahner, Elena Howard, Brendan W. Wren, Yakubova, David E. Salt Matthew T. G. Holden, Lisa Crossman, Gregory L. Challis, About the Cover Drosophila SPF45: A Bifunctional 1974 Carol Churcher, Karen The jigsaw image of representatives Protein with Roles in Both e178 Mungall, Karen Brooks, Tracey of various lines of eukaryote evolution Splicing and DNA Repair Chillingworth, Theresa Feltwell, refl ects the current lack of consensus as Ahmad Sami Chaouki, Helen K. Zahra Abdellah, Heidi Hauser, to how the major branches of eukaryotes Salz Kay Jagels, Mark Maddison, fi t together. The illustrations from upper Sharon Moule, Mandy Sanders, left to bottom right are as follows: a single Mammalian Small Nucleolar 1984 Sally Whitehead, Michael A. scale from the surface of Umbellosphaera; RNAs Are Mobile Genetic e205 Quail, Gordon Dougan, Julian Amoeba, the large amoeboid organism Elements Parkhill, Michael B. Prentice used as an introduction to protists for Michel J. Weber many school children; Euglena, the iconic Low Levels of Genetic 2052 fl agellate that is often used to challenge Soft Sweeps III: The Signature 1998 Divergence across e215 ideas of plants (Euglena has chloroplasts) of Positive Selection from e186 Geographically and and animals (Euglena moves); Stentor, Recurrent Mutation Linguistically Diverse one of the larger ciliates; Cacatua, the Pleuni S. -
Sex Is a Ubiquitous, Ancient, and Inherent Attribute of Eukaryotic Life
PAPER Sex is a ubiquitous, ancient, and inherent attribute of COLLOQUIUM eukaryotic life Dave Speijera,1, Julius Lukešb,c, and Marek Eliášd,1 aDepartment of Medical Biochemistry, Academic Medical Center, University of Amsterdam, 1105 AZ, Amsterdam, The Netherlands; bInstitute of Parasitology, Biology Centre, Czech Academy of Sciences, and Faculty of Sciences, University of South Bohemia, 370 05 Ceské Budejovice, Czech Republic; cCanadian Institute for Advanced Research, Toronto, ON, Canada M5G 1Z8; and dDepartment of Biology and Ecology, University of Ostrava, 710 00 Ostrava, Czech Republic Edited by John C. Avise, University of California, Irvine, CA, and approved April 8, 2015 (received for review February 14, 2015) Sexual reproduction and clonality in eukaryotes are mostly Sex in Eukaryotic Microorganisms: More Voyeurs Needed seen as exclusive, the latter being rather exceptional. This view Whereas absence of sex is considered as something scandalous for might be biased by focusing almost exclusively on metazoans. a zoologist, scientists studying protists, which represent the ma- We analyze and discuss reproduction in the context of extant jority of extant eukaryotic diversity (2), are much more ready to eukaryotic diversity, paying special attention to protists. We accept that a particular eukaryotic group has not shown any evi- present results of phylogenetically extended searches for ho- dence of sexual processes. Although sex is very well documented mologs of two proteins functioning in cell and nuclear fusion, in many protist groups, and members of some taxa, such as ciliates respectively (HAP2 and GEX1), providing indirect evidence for (Alveolata), diatoms (Stramenopiles), or green algae (Chlor- these processes in several eukaryotic lineages where sex has oplastida), even serve as models to study various aspects of sex- – not been observed yet. -
2019 Samsung American Legion Scholarship Annual Report
Samsung American Legion Scholarship and Samsung American Legion Alumni Association 2019 ANNUAL REPORT In accordance with federal law and U.S. Department of the Treasury policy, this institution is prohib- ited from discriminating on the basis of race, color, national origin, age, or disability. To file a com- plaint of discrimination write to the Director, Office of Civil Rights and Diversity, 1500 Pennsylvania Avenue, NW, Washington, DC 20220. The Department of Treasury is an equal opportunity provider and employer. Table of Contents Mission Statement ............................... 3 Introduction ...................................... 3 Program Overview ............................... 4 Program Rules and Conditions ................ 6-9 Program Awards ............................... 10 Application Breakdown ......................... 11 2019 National Scholars ...................... 12-16 Samsung American Legion Alumni Association ............................. 17 Samsung | American Legion Scholarship 2019 Annual Report 1 2 Samsung | American Legion Scholarship 2019 Annual Report Mission Statement The American Legion ensures the overall purpose of Samsung’s scholarship endowment is fulfilled, which is providing direct descendants of veterans who honorably served their country with higher learning opportunities. This is accomplished by reviewing and maintaining eligibility rules for partic- ipants; determining the number and value of scholarships to be awarded; selecting the most quali- fied applicants as Department Finalists and National Scholars; investigating and discussing possible expansion of the program; and establishing guidelines for participation in one such expansion, which is the Samsung American Legion Alumni Association. Introduction On July 26, 1995, the Samsung Group and The American Legion held a joint press conference in Washington, D.C., to announce Samsung’s endowment of a $5 million educational scholarship fund to The American Legion for administration to direct descendants of U.S. -
Species Assessment for Jair Underwing
Species Status Assessment Class: Lepidoptera Family: Noctuidae Scientific Name: Catocala jair Common Name: Jair underwing Species synopsis: Two subspecies of Catocala exist-- Catocala jair and Catocala jair ssp2. Both occur in New York. Subspecies 2 has seldom been correctly identified leading to false statements that the species is strictly Floridian. Nearly all literature on the species neglects the widespread "subspecies 2." Cromartie and Schweitzer (1997) had it correct. Sargent (1976) discussed and illustrated the taxon but was undecided as to whether it was C. jair. It has also been called C. amica form or variety nerissa and one Syntype of that arguably valid taxon is jair and another is lineella. The latter should be chosen as a Lectotype to preserve the long standing use of jair for this species. Both D.F. Schweitzer and L.F. Gall have determined that subspecies 2 and typical jair are conspecific. The unnamed taxon should be named but there is little chance it is a separate species (NatureServe 2012). I. Status a. Current and Legal Protected Status i. Federal ____ Not Listed____________________ Candidate? _____No______ ii. New York ____Not Listed; SGCN_____ ___________________________________ b. Natural Heritage Program Rank i. Global _____G4?___________________________________________________________ ii. New York ______SNR_________ ________ Tracked by NYNHP? ____Yes____ Other Rank: None 1 Status Discussion: The long standing G4 rank needs to be re-evaluated. New Jersey, Florida, and Texas would probably drive the global rank. The species is still locally common on Long Island, but total range in New York is only a very small portion of Suffolk County (NatureServe 2012). II. Abundance and Distribution Trends a. -
Two Domains of Life, Not Three?
Asgard Archaea Two domains of life, not three? A picture of visual interpretation of the Wagner’s opera Das Rheingold, a part of Richard Wagner’s Der Ring des Nibelungen Loki's Castle is a field of five active hydrothermal vents in the mid-Atlantic Ocean, located at 73 degrees north on the Mid-Atlantic Ridge between Greenland and Norway at a depth of 2,352 metres The vents were discovered in 2008 by a multinational scientific expedition of the university of Bergen, and are the most northerly black smokers to date. The five active chimneys of Loki's Castle are venting water as hot as 300 °C and sit on a vast mound of sulfide minerals. The vent field was given the name Loki's Castle as its shape reminded its discoverers of a fantasy castle. The reference is to the ancient Norse god of trickery, Loki. The top three feet (1 m) of a vent chimney almost 40 feet (12 m) tall at Loki's Castle in mid-July 2008. Visible at left is the arm of a remotely operated vehicle, reaching in to take fluid samples. Loki’s Castle Wents Loki's Castle - a field of five active hydrothermal vents in the mid-Atlantic Ocean - at 73 degrees north on the Mid-Atlantic Ridge - at a depth of 2,352 meters In Norse mythology, Loki is a cunning trickster who has the ability to change his shape and sex. Loki is represented as the companion of the great gods Odin and Thor. Preliminary observations have shown the warm area around the Loki's Castle vents to be alive with diverse and apparently unique microorganisms, unlike vent communities observed elsewhere. -
Multigene Eukaryote Phylogeny Reveals the Likely Protozoan Ancestors of Opis- Thokonts (Animals, Fungi, Choanozoans) and Amoebozoa
Accepted Manuscript Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opis- thokonts (animals, fungi, choanozoans) and Amoebozoa Thomas Cavalier-Smith, Ema E. Chao, Elizabeth A. Snell, Cédric Berney, Anna Maria Fiore-Donno, Rhodri Lewis PII: S1055-7903(14)00279-6 DOI: http://dx.doi.org/10.1016/j.ympev.2014.08.012 Reference: YMPEV 4996 To appear in: Molecular Phylogenetics and Evolution Received Date: 24 January 2014 Revised Date: 2 August 2014 Accepted Date: 11 August 2014 Please cite this article as: Cavalier-Smith, T., Chao, E.E., Snell, E.A., Berney, C., Fiore-Donno, A.M., Lewis, R., Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa, Molecular Phylogenetics and Evolution (2014), doi: http://dx.doi.org/10.1016/ j.ympev.2014.08.012 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. 1 1 Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts 2 (animals, fungi, choanozoans) and Amoebozoa 3 4 Thomas Cavalier-Smith1, Ema E. Chao1, Elizabeth A. Snell1, Cédric Berney1,2, Anna Maria 5 Fiore-Donno1,3, and Rhodri Lewis1 6 7 1Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK. -
Towards a Management Hierarchy (Classification) for the Catalogue of Life
TOWARDS A MANAGEMENT HIERARCHY (CLASSIFICATION) FOR THE CATALOGUE OF LIFE Draft Discussion Document Rationale The Catalogue of Life partnership, comprising Species 2000 and ITIS (Integrated Taxonomic Information System), has the goal of achieving a comprehensive catalogue of all known species on Earth by the year 2011. The actual number of described species (after correction for synonyms) is not presently known but estimates suggest about 1.8 million species. The collaborative teams behind the Catalogue of Life need an agreed standard classification for these 1.8 million species, i.e. a working hierarchy for management purposes. This discussion document is intended to highlight some of the issues that need clarifying in order to achieve this goal beyond what we presently have. Concerning Classification Life’s diversity is classified into a hierarchy of categories. The best-known of these is the Kingdom. When Carl Linnaeus introduced his new “system of nature” in the 1750s ― Systema Naturae per Regna tria naturae, secundum Classes, Ordines, Genera, Species …) ― he recognised three kingdoms, viz Plantae, Animalia, and a third kingdom for minerals that has long since been abandoned. As is evident from the title of his work, he introduced lower-level taxonomic categories, each successively nested in the other, named Class, Order, Genus, and Species. The most useful and innovative aspect of his system (which gave rise to the scientific discipline of Systematics) was the use of the binominal, comprising genus and species, that uniquely identified each species of organism. Linnaeus’s system has proven to be robust for some 250 years. The starting point for botanical names is his Species Plantarum, published in 1753, and that for zoological names is the tenth edition of the Systema Naturae published in 1758. -
Versión Disponible En PDF
nicolás r chimento, Federico L agnolin y Fernando e novas Museo Argentino de Ciencias Naturales Bernardino Rivadavia Necrolestes un mamífero patagónico que sobrevivió a la extinción de los dinosaurios Un descubrimiento patagónico desembocadura del río Santa Cruz, descubrieron esque- letos fósiles prácticamente completos del Necrolestes. El es- En 1891, Florentino Ameghino (1854-1911) dio a tudio de esos esqueletos llevó a pensar que se trataba de conocer unos restos fósiles encontrados por su hermano un mamífero muy arcaico en la historia de la evolución, Carlos (1865-1936) en las barrancas de Monte Obser- más que un ancestro de los topos, como había supuesto vación, en la provincia de Santa Cruz, en yacimientos Ameghino. Por determinados rasgos se pensó que podía de unos 17 millones de años de antigüedad. Determinó haber sido un marsupial, es decir, un pariente lejano de las que pertenecían a un pequeño –escasos 10cm de largo, comadrejas, los canguros y los coalas actuales. del hocico a la cola– y desconocido mamífero extin- Ciertos investigadores aceptaron esta última hipótesis guido. Estudió los diminutos huesos y consideró que de parentesco, pero otros se mostraron escépticos acerca el animal habría sido un pariente lejano de los topos de ella y se inclinaron por considerar inciertas las rela- africanos vivientes. Le dio el nombre científicoN ecrolestes ciones genealógicas del diminuto mamífero. Así, su po- patagonensis, es decir, ladrón de tumbas de la Patagonia, en sición en el árbol evolutivo de los mamíferos fue objeto alusión a sus hábitos excavadores. El hallazgo, publica- de debate durante gran parte del siglo XX. Para algunos, do por Ameghino en el número de la Revista Argentina de era pariente lejano de las mulitas; otros seguían pensan- Historia Natural citado entre las lecturas sugeridas, atrajo do que podía estar relacionado con los topos, y para un la atención del ámbito científico, ya que hasta ese mo- tercer grupo, sus vínculos eran con los marsupiales aus- mento en Sudamérica no se habían encontrado restos tralianos. -
0 Introduction
Cambridge University Press 978-0-521-78117-6 - Evolution of Tertiary Mammals of North America, Volume 2: Small Mammals, Xenarthrans, and Marine Mammals Christine M. Janis, Gregg F. Gunnell and Mark D. Uhen Excerpt More information 0 Introduction christine m. janis,1 gregg f. gunnell2 and mark d. uhen3 1Brown University, Providence, RI, USA 2Museum of Paleontology, University of Michigan, Ann Arbor, MI, USA 3Smithsonian Institution, Washington, DC, USA AIMS OF VOLUME 2 the chapter are presented according to a standardized format, and the institutional abbreviations have also been standardized and are This enterprise was originally conceived of as a single volume. How- listed in an appendix (Appendix III). ever, after a span of 10 years from its original conception, the current senior editor (Christine Janis), and the then junior editors (Kathleen Scott and Louis Jacobs) realized that it would be more realistic THE STANDARDIZED LAYOUT OF EACH CHAPTER to proceed with chapters then in hand, which could more or less be assembled into the conceptually useful, if taxonomically para- The chapters are laid out in a similar fashion to those in Volume 1. phyletic, rubric of “Terrestrial Carnivores and Ungulates” (Janis, The contributors were requested to adhere to a common layout for Scott, and Jacobs, 1998). This in part reflected the chapters that had each chapter, in order to provide uniform information throughout been assembled to date, although it should be noted that some of the book. The “Introduction” for each chapter introduces the group. the chapters in this current volume, most notably those by Darryl The “Defining features” section lays out the basic cranial, dental, Domning on sirenians and desmostylians, were among the first ones and postcranial features of the taxon. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Functionalized Membrane Domains: an Ancestral Feature of Archaea? Maxime Tourte, Philippe Schaeffer, Vincent Grossi, Phil Oger
Functionalized Membrane Domains: An Ancestral Feature of Archaea? Maxime Tourte, Philippe Schaeffer, Vincent Grossi, Phil Oger To cite this version: Maxime Tourte, Philippe Schaeffer, Vincent Grossi, Phil Oger. Functionalized Membrane Domains: An Ancestral Feature of Archaea?. Frontiers in Microbiology, Frontiers Media, 2020, 11, pp.526. 10.3389/fmicb.2020.00526. hal-02553764 HAL Id: hal-02553764 https://hal.archives-ouvertes.fr/hal-02553764 Submitted on 20 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fmicb-11-00526 March 30, 2020 Time: 21:44 # 1 ORIGINAL RESEARCH published: 31 March 2020 doi: 10.3389/fmicb.2020.00526 Functionalized Membrane Domains: An Ancestral Feature of Archaea? Maxime Tourte1†, Philippe Schaeffer2†, Vincent Grossi3† and Phil M. Oger1*† 1 Université de Lyon, INSA Lyon, CNRS, MAP UMR 5240, Villeurbanne, France, 2 Université de Strasbourg-CNRS, UMR 7177, Laboratoire de Biogéochimie Moléculaire, Strasbourg, France, 3 Université de Lyon, ENS Lyon, CNRS, Laboratoire de Géologie de Lyon, UMR 5276, Villeurbanne, France Bacteria and Eukarya organize their plasma membrane spatially into domains of distinct functions. Due to the uniqueness of their lipids, membrane functionalization in Archaea remains a debated area. -
TITLE 17 ANIMALS* Chapter 17.05 GENERAL PROVISIONS*
TITLE 17 ANIMALS* __________ *Cross references: General penalties and enforcement, Ch. 1.45; animal control advisory board, § 4.60.180; carrying animals on outside of vehicles, § 9.36.150; public nuisances, Ch. 15.20; prohibited noise practices, § 15.70.060; ownership or breeding of rats prohibited, § 16.90.030. __________ 17.05 General Provisions 17.10 Standards for the Care and Control of Animals 17.15 Rabies Control and Municipal Licensing 17.25 Impoundment, Adoption, Redemption, and Euthanasia of Animals 17.30 Rabies Control, Immunization, and Quarantine Procedures. 17.35 Cruelty to Animals (Renumbered to 8.55). 17.40 Regulation of Animal Behavior. 17.60 Wolf Hybrids. 17.70 Animal Care and Control Fees, Fines, and Penalties. Appendix Chapter 8.55. Cruelty to Animals Chapter 17.05 GENERAL PROVISIONS* ________________*Editor's note--AO No. 2001-158(S-4), § 1, effective Jan. 1, 2003, repealed former AMC Ch. 17.05 and enacted provisions designated as a new Ch. 17.05 to read as herein set out. Former AMC Ch. 17.05 pertained to similar subject matter. History of former AMC Ch. 17.05 is as set out below. The user is also directed to the Code Comparative Table. 17.05.010 Definitions. (GAAB 17.05.010; AO No. 78-65A; AO No. 83-97, 11-21-83; AO No. 86-39, 7-15-86; AO No. 89-25(S); AO No. 90-27(S-1); AO No. 91-85(S-1); AO No. 92-75(S); AO No. 96- 134(S-2), § 1, 7-1-97) 17.05.020 Animal control office.