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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
(Teleostei: Pempheridae) from the Western Indian Ocean
Zootaxa 3780 (2): 388–398 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3780.2.10 http://zoobank.org/urn:lsid:zoobank.org:pub:F42C1553-10B0-428B-863E-DCA8AC35CA44 Pempheris bexillon, a new species of sweeper (Teleostei: Pempheridae) from the Western Indian Ocean RANDALL D. MOOI1,2 & JOHN E. RANDALL3 1The Manitoba Museum, 190 Rupert Ave., Winnipeg MB, R3B 0N2 Canada. E-mail: [email protected] 2Department of Biological Sciences, Biological Sciences Bldg., University of Manitoba, Winnipeg MB, R3T 2N2 Canada 3Bishop Museum, 1525 Bernice St., Honolulu, HI 96817-2704 USA. E-mail: [email protected] Abstract Pempheris bexillon new species is described from the 129 mm SL holotype and 11 paratypes (119–141 mm SL) from the Comoro Islands. Twelve other specimens have been examined from the Agaléga Islands, Mascarene Islands, and Bassas da India (Madagascar). It is differentiated from other Pempheris by the following combination of characters: a yellow dor- sal fin with a black, distal margin along its full length, broadest on anterior rays (pupil-diameter width) and gradually nar- rowing posteriorly, the last ray with only a black tip; large, deciduous cycloid scales on the flank; dark, oblong spot on the pectoral-fin base; anal fin with a dark margin; segmented anal-fin rays 38–45 (usually >40); lateral-line scales 56–65; and total gill rakers on the first arch 31–35; iris reddish-brown. Tables of standard meristic and color data for type material of all nominal species of cycloid-scaled Pempheris in the Indo-Pacific are provided. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Ostorhinchus: Apogonidae) from the Solomon Islands
aqua, International Journal of Ichthyology A new species of cardinalfish (Ostorhinchus: Apogonidae) from the Solomon Islands Gerald R. Allen1 and Mark V. Erdmann2, 3 1) Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2) Conservation International Indonesia Marine Program, Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. E-mail: [email protected] 3) California Academy of Sciences, 55 Museum Concourse Drive, San Francisco, CA 94118, USA. Received: 24 December 2016 – Accepted: 30 December 2016 Keywords Reihe schwacher, schmaler dunkler Streifen in der unteren Taxonomy, cardinalfish, new species, reef fish, Solomon Hälfte, sowie ein schwarzer Außenrand der ersten Rücken- Islands. flosse. Das neue Taxon ähnelt O. lineomaculatus von den Kleinen Sundainseln Indonesiens, unterscheidet sich aber Abstract durch das Farbmuster, einen breiteren Interorbitalraum, A new species of apogonid, Ostorhinchus pallidus, is de- einen tieferen Schwanzstiel und einen längeren ersten After- scribed from 13 specimens, 41.2-51.8 mm SL, collected in flossenstrahl. 18-30 m at Guadalcanal and Makira in the Solomon Is- lands. Diagnostic features include dorsal rays VII-I,9; anal Résumé rays II,8; pectoral rays 14-15; lateral-line scales 24; predorsal Une nouvelle espèce d’Apogonidé, Ostorinchus pallidus est scales 3-4; developed gill rakers 4-5 + 18-19; preopercular décrite sur base de 13 spécimens, 41,2-51,8 mm LS, collec- margin and ridge serrate; body depth 2.9-3.4 in SL; third tés à une profondeur de 18-30 m à Guadalcanal et Makira and fourth dorsal spines longest; colour in life pale pinkish, dans les îles Salomon. -
First Chromosome Analysis of the Humpback Cardinalfish, Fibramia
© 2017 The Japan Mendel Society Cytologia 82(1) Special Issue: 9–15 First Chromosome Analysis of the Humpback Cardinalfish, Fibramia lateralis (Perciformes, Apogonidae) Wannapa Kasiroek1,2, Chantra Indananda3, Nattawut Luangoon2, Krit Pinthong4, Weerayuth Supiwong5 and Alongklod Tanomtong6* 1 Department of Aquatic Science, Faculty of Science, Burapha University, Muang, Chonburi 20131, Thailand 2 Institute of Marine Science, Burapha University, Muang, Chonburi 20131, Thailand 3 Department of Biology, Faculty of Science, Burapha University, Muang, Chonburi 20131, Thailand 4 Department of Fundamental Science, Faculty of Science and Technology, Surindra Rajabhat University, Muang, Surin 32000, Thailand 5 Faculty of Applied Science and Engineering, Khon Kaen University, Nong Khai Campus, Muang, Nong Khai 43000, Thailand 6 Toxic Substances in Livestock and Aquatic Animals Research Group, Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen 40002, Thailand Received July 27, 2015; accepted November 23, 2015 Summary The first chromosome analysis and nucleolar organizer region (NOR) pattern of the humpback car- dinalfish (Fibramia lateralis) were studied. Samples from 10 male and 10 female fish were collected from the Andaman Sea and Gulf of Thailand. Mitotic chromosome preparations were prepared directly from kidney tis- sues. Conventional and Ag-NOR staining techniques were applied to stain the chromosomes. The results showed that the diploid chromosome number of F. lateralis was 2n=46, and the fundamental numbers (NF) were 54 in both sexes. The karyotype consisted of 8 large acrocentric, 12 large telocentric, 24 medium telocentric and 2 small telocentric chromosomes. Moreover, the results indicated that the region adjacent to the telomere of the short arm of the second acrocentric chromosome pair showed clearly observable nucleolar organizer regions (NORs). -
Fish Assemblage Structure Comparison Between Freshwater and Estuarine Habitats in the Lower Nakdong River, South Korea
Journal of Marine Science and Engineering Article Fish Assemblage Structure Comparison between Freshwater and Estuarine Habitats in the Lower Nakdong River, South Korea Joo Myun Park 1,* , Ralf Riedel 2, Hyun Hee Ju 3 and Hee Chan Choi 4 1 Dokdo Research Center, East Sea Research Institute, Korea Institute of Ocean Science and Technology, Uljin 36315, Korea 2 S&R Consultancy, Ocean Springs, MS 39564, USA; [email protected] 3 Ocean Policy Institute, Korea Institute of Ocean Science and Technology, Busan 49111, Korea; [email protected] 4 Fisheries Resources and Environment Division, East Sea Fisheries Research Institute, National Institute of Fisheries Science, Gangneung 25435, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-54-780-5344 Received: 6 June 2020; Accepted: 3 July 2020; Published: 5 July 2020 Abstract: Variabilities of biological communities in lower reaches of urban river systems are highly influenced by artificial constructions, alterations of flow regimes and episodic weather events. Impacts of estuary weirs on fish assemblages are particularly distinct because the weirs are disturbed in linking between freshwater and estuarine fish communities, and migration successes for regional fish fauna. This study conducted fish sampling at the lower reaches of the Nakdong River to assess spatio-temporal variations in fish assemblages, and effects of estuary weir on structuring fish assemblage between freshwater and estuary habitats. In total, 20,386 specimens comprising 78 species and 41 families were collected. The numerical dominant fish species were Tachysurus nitidus (48.8% in total abundance), Hemibarbus labeo (10.7%) and Chanodichthys erythropterus (3.6%) in the freshwater region, and Engraulis japonicus (10.0%), Nuchequula nuchalis (7.7%) and Clupea pallasii (5.2%) in the estuarine site. -
Interacting Effects of Elevated Temperature and Ocean Acidification on the Aerobic Performance of Coral Reef Fishes
Vol. 388: 235–242, 2009 MARINE ECOLOGY PROGRESS SERIES Published August 19 doi: 10.3354/meps08137 Mar Ecol Prog Ser Interacting effects of elevated temperature and ocean acidification on the aerobic performance of coral reef fishes Philip L. Munday1, 2,*, Natalie E. Crawley1, 2, Göran E. Nilsson3 1ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville 4811, Australia 2School of Marine and Tropical Biology, James Cook University, Townsville 4811, Australia 3Physiology Programme, Department of Molecular Biosciences, University of Oslo, PO Box 1041, 0316 Oslo, Norway ABSTRACT: Concerns about the impacts of ocean acidification on marine life have mostly focused on how reduced carbonate saturation affects calcifying organisms. Here, we show that levels of CO2-induced acidification that may be attained by 2100 could also have significant effects on marine organisms by reducing their aerobic capacity. The effects of temperature and acidification on oxygen consumption were tested in 2 species of coral reef fishes, Ostorhinchus doederleini and O. cyanosoma, from the Great Barrier Reef, Australia. The capacity for aerobic activity (aerobic scope) declined at temperatures above the summer average (29°C) and in CO2-acidified water (pH 7.8 and ~1000 ppm CO2) compared to control water (pH 8.15). Aerobic scope declined by 36 and 32% for O. doederleini and O. cyanosoma at temperatures between 29 to 32°C, whereas it declined by 33 and 47% for O. doederleini and O. cyanosoma in acidified water compared to control water. Thus, the declines in aerobic scope in acidified water were similar to those caused by a 3°C increase in water –1 –1 temperature. -
Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2016 Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes Christi Linardich Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, Environmental Health and Protection Commons, and the Marine Biology Commons Recommended Citation Linardich, Christi. "Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes" (2016). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/hydh-jp82 https://digitalcommons.odu.edu/biology_etds/13 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES by Christi Linardich B.A. December 2006, Florida Gulf Coast University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2016 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Holly Gaff (Member) ABSTRACT HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES Christi Linardich Old Dominion University, 2016 Advisor: Dr. Kent E. Carpenter Understanding the status of species is important for allocation of resources to redress biodiversity loss. -
MULLIDAE Goatfishes by J.E
click for previous page 1654 Bony Fishes MULLIDAE Goatfishes by J.E. Randall, B.P.Bishop Museum, Hawaii, USA iagnostic characters: Small to medium-sized fishes (to 40 cm) with a moderately elongate, slightly com- Dpressed body; ventral side of head and body nearly flat. Eye near dorsal profile of head. Mouth relatively small, ventral on head, and protrusible, the upper jaw slightly protruding; teeth conical, small to very small. Chin with a pair of long sensory barbels that can be folded into a median groove on throat. Two well separated dorsal fins, the first with 7 or 8 spines, the second with 1 spine and 8 soft rays. Anal fin with 1 spine and 7 soft rays.Caudal fin forked.Paired fins of moderate size, the pectorals with 13 to 17 rays;pelvic fins with 1 spine and 5 soft rays, their origin below the pectorals. Scales large and slightly ctenoid (rough to touch); a single continuous lateral line. Colour: variable; whitish to red, with spots or stripes. 1st dorsal fin with 7or8spines 2nd dorsal fin with 1 spine and 8 soft rays pair of long sensory barbels Habitat, biology, and fisheries: Goatfishes are bottom-dwelling fishes usually found on sand or mud sub- strata, but 2 of the 4 western Atlantic species occur on coral reefs where sand is prevalent. The barbels are supplied with chemosensory organs and are used to detect prey by skimming over the substratum or by thrust- ing them into the sediment. Food consists of a wide variety of invertebrates, mostly those that live beneath the surface of the sand or mud.