Interacting Effects of Elevated Temperature and Ocean Acidification on the Aerobic Performance of Coral Reef Fishes
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Changes in Opsin Expression Under Varying Light Conditions Differ Between Ecologically Distinct Fish Species Martin Luehrmann1,*,‡, Sara M
© 2018. Published by The Company of Biologists Ltd | Journal of Experimental Biology (2018) 221, jeb175281. doi:10.1242/jeb.175281 RESEARCH ARTICLE Short-term colour vision plasticity on the reef: changes in opsin expression under varying light conditions differ between ecologically distinct fish species Martin Luehrmann1,*,‡, Sara M. Stieb1,2,*,‡, Karen L. Carleton3, Alisa Pietzker1, Karen L. Cheney1,4 and N. Justin Marshall1 ABSTRACT Foote et al., 2004; Miyagi et al., 2012; Rick et al., 2006; Sandkam Vision mediates important behavioural tasks such as mate choice, et al., 2015; Stuart-Fox et al., 2003). Therefore, tuning of escape from predators and foraging. In fish, photoreceptors are photoreceptor spectral sensitivities to specific visual tasks and/or generally tuned to specific visual tasks and/or to their light parts of the light spectrum relevant for such behaviours may be environment, according to depth or water colour to ensure important for maintaining optimal performance (Price, 2017). This optimal performance. Evolutionary mechanisms acting on genes is particularly evident in fish, which have dispersed and adapted to encoding opsin, the protein component of the photopigment, can habitats profoundly different in their light environment, including influence the spectral sensitivity of photoreceptors. Opsin genes freshwater lakes and rivers, marine coastal reefs, pelagic zones and are known to respond to environmental conditions on a number of the deep sea. Considering the light conditions in these environments, time scales, including short time frames due to seasonal variation, fish visual systems have adapted to the overall environmental or through longer-term evolutionary tuning. There is also evidence illumination of their habitat (Cronin et al., 2014; Lythgoe, 1979). -
Social Relationships in a Small Habitat-Dependent Coral Reef Fish: an Ecological, Behavioural and Genetic Analysis
ResearchOnline@JCU This file is part of the following reference: Rueger, Theresa (2016) Social relationships in a small habitat-dependent coral reef fish: an ecological, behavioural and genetic analysis. PhD thesis, James Cook University. Access to this file is available from: http://researchonline.jcu.edu.au/46690/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://researchonline.jcu.edu.au/46690/ Social relationships in a small habitat- dependent coral reef fish: an ecological, behavioural and genetic analysis Thesis submitted by Theresa Rueger, March 2016 for the degree of Doctor of Philosophy College of Marine and Environmental Science & ARC Centre of Excellence for Coral Reef Studies James Cook University Declaration of Ethics This research presented and reported in this thesis was conducted in compliance with the National Health and Medical Research Council (NHMRC) Australian Code of Practice for the Care and Use of Animals for Scientific Purposes, 7th Edition, 2004 and the Qld Animal Care and Protection Act, 2001. The proposed research study received animal ethics approval from the JCU Animal Ethics Committee Approval Number #A1847. Signature ___31/3/2016___ Date i Acknowledgement This thesis was no one-woman show. There is a huge number of people who contributed, directly or indirectly, to its existence. I had amazing support during my field work, by fellow students and good friends Tiffany Sih, James White, Patrick Smallhorn-West, and Mariana Alvarez-Noriega. -
First Chromosome Analysis of the Humpback Cardinalfish, Fibramia
© 2017 The Japan Mendel Society Cytologia 82(1) Special Issue: 9–15 First Chromosome Analysis of the Humpback Cardinalfish, Fibramia lateralis (Perciformes, Apogonidae) Wannapa Kasiroek1,2, Chantra Indananda3, Nattawut Luangoon2, Krit Pinthong4, Weerayuth Supiwong5 and Alongklod Tanomtong6* 1 Department of Aquatic Science, Faculty of Science, Burapha University, Muang, Chonburi 20131, Thailand 2 Institute of Marine Science, Burapha University, Muang, Chonburi 20131, Thailand 3 Department of Biology, Faculty of Science, Burapha University, Muang, Chonburi 20131, Thailand 4 Department of Fundamental Science, Faculty of Science and Technology, Surindra Rajabhat University, Muang, Surin 32000, Thailand 5 Faculty of Applied Science and Engineering, Khon Kaen University, Nong Khai Campus, Muang, Nong Khai 43000, Thailand 6 Toxic Substances in Livestock and Aquatic Animals Research Group, Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen 40002, Thailand Received July 27, 2015; accepted November 23, 2015 Summary The first chromosome analysis and nucleolar organizer region (NOR) pattern of the humpback car- dinalfish (Fibramia lateralis) were studied. Samples from 10 male and 10 female fish were collected from the Andaman Sea and Gulf of Thailand. Mitotic chromosome preparations were prepared directly from kidney tis- sues. Conventional and Ag-NOR staining techniques were applied to stain the chromosomes. The results showed that the diploid chromosome number of F. lateralis was 2n=46, and the fundamental numbers (NF) were 54 in both sexes. The karyotype consisted of 8 large acrocentric, 12 large telocentric, 24 medium telocentric and 2 small telocentric chromosomes. Moreover, the results indicated that the region adjacent to the telomere of the short arm of the second acrocentric chromosome pair showed clearly observable nucleolar organizer regions (NORs). -
Reef Life Survey Assessment of Coral Reef Biodiversity in the North -West Marine Parks Network
Reef Life Survey Assessment of Coral Reef Biodiversity in the North -west Marine Parks Network Graham Edgar, Camille Mellin, Emre Turak, Rick Stuart- Smith, Antonia Cooper, Dani Ceccarelli Report to Parks Australia, Department of the Environment 2020 Citation Edgar GJ, Mellin C, Turak E, Stuart-Smith RD, Cooper AT, Ceccarelli DM (2020) Reef Life Survey Assessment of Coral Reef Biodiversity in the North-west Marine Parks Network. Reef Life Survey Foundation Incorporated. Copyright and disclaimer © 2020 RLSF To the extent permitted by law, all rights are reserved and no part of this publication covered by copyright may be reproduced or copied in any form or by any means except with the written permission of The Reef Life Survey Foundation. Important disclaimer The RLSF advises that the information contained in this publication comprises general statements based on scientific research. The reader is advised and needs to be aware that such information may be incomplete or unable to be used in any specific situation. No reliance or actions must therefore be made on that information without seeking prior expert professional, scientific and technical advice. To the extent permitted by law, The RLSF (including its volunteers and consultants) excludes all liability to any person for any consequences, including but not limited to all losses, damages, costs, expenses and any other compensation, arising directly or indirectly from using this publication (in part or in whole) and any information or material contained in it. Images Cover: RLS diver -
Materials and Methods
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Woods Hole Open Access Server 1 2 3 Planktonic Larval Duration, Age and Growth of Ostorhinchus doederleini (Pisces: Apogonidae) on 4 the Southern Great Barrier Reef, Australia 5 6 M.J. Kingsford1* 7 M.D. Finn1† 8 M.D. O’Callaghan1 9 J. Atema2 10 G. Gerlach3 11 1 ARC Centre of Excellence for Coral Reef Studies, School of Marine and Tropical Biology, James 12 Cook University, Townsville, QLD, Australia 4811 13 14 2 University of Boston, and Woodshole Oceanographic Institute 15 3Carl von Ossietzky University of Oldenburg Carl von Ossietzky Str. 9-11, 26111 Oldenburg, Germany 16 *Corresponding Author. 17 Phone: +61 7 4781 4345 18 FAX: +61 7 4781 5511 19 E-mail: [email protected] 20 †Current address: School of Marine and Tropical Biology, James Cook University, Townsville, Qld 21 4811 Australia 22 Keywords: Apogonidae, otoliths, age, PLD, settlement, growth, mortality. 23 24 1 25 26 Abstract 27 Cardinalfishes (Apogonidae) are abundant on corals reefs, but there are few data on demography to 28 understand trophodynamics and population dynamics. Ostorhinchus doederleini is a small and abundant 29 apogonid on the Great Barrier Reef (GBR) and throughout the Western Pacific Ocean. We present key 30 demographic parameters for the entire life history from the southern GBR. Daily deposition of 31 increments in otoliths was validated. Fish had a Planktonic Larval Duration (PLD) of 16 to 26 days. 32 PLD was established from fish collected immediately prior to settlement as no settlement mark was 33 found. -
Microhabitat Partitioning Correlates with Opsin Gene Expression in Coral Reef
1 Microhabitat partitioning correlates with opsin gene expression in coral reef 2 cardinalfishes (Apogonidae) 3 4 Martin Luehrmann (ML) 1, Fabio Cortesi (FC) 1, Karen L. Cheney (KLC) 1,2, Fanny de Busserolles 5 (FbB)1, N. Justin Marshall (JM) 1 6 7 1Queensland Brain Institute, The University of Queensland, Sensory Neurobiology Group, 4072, 8 Brisbane, QLD, Australia 9 2School of Biological Sciences, The University of Queensland, 4072, Brisbane, QLD, Australia 10 11 Corresponding Author: Dr Martin Luehrmann 12 Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, Brisbane | 13 QLD 4072 | Australia, Fax number: +61 (0)7 33654522 14 Email: [email protected] 15 16 Keywords 17 Microhabitat partioning, opsin gene expression, fish, cardinalfish, LWS, RH2, SWS2, vertebrate 18 visual system evolution, eye size, retinal topography 19 20 Headline: Visual adaptation to microhabitats in reef fish Author Manuscript This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/1365-2435.13529 This article is protected by copyright. All rights reserved 1 2 DR MARTIN LUEHRMANN (Orcid ID : 0000-0002-4060-4592) 3 DR KAREN CHENEY (Orcid ID : 0000-0001-5622-9494) 4 5 6 Article type : Research Article 7 Editor : Christine Miller 8 Section : Evolutionary Ecology 9 10 11 Microhabitat partitioning correlates with opsin gene expression in coral reef 12 cardinalfishes (Apogonidae) 13 14 Martin Luehrmann (ML) 1, Fabio Cortesi (FC) 1, Karen L. -
Climate Change and Coral Reef Connectivity
Coral Reefs (2009) 28:379-395 DOI 10.1007/s003 3 8-008-0461-9 REV IEW Climate change and coral reef connectivity P. L. Munday • J. M. Leis • J. M. Lough • C. B. Paris • M. J. Kingsford • M. L. Berumen • J. Lambrechts Received: 1 August 2008/Accepted: 9 December 2008/Published online: 14 January 2009 © Springer-Verlag 2009 Abstract This review assesses and predicts the impacts temperature might enhance the number of larvae surviving that rapid climate change will have on population connec the pelagic phase, but larger increases are likely to reduce tivity in coral reef ecosystems, using fishes as a model reproductive output and increase larval mortality. Changes group. Increased ocean temperatures are expected to to ocean currents could alter the dynamics of larval supply accelerate larval development, potentially leading to and changes to planktonic productivity could affect how reduced pelagic durations and earlier reef-seeking behav many larvae survive the pelagic stage and their condition at iour. Depending on the spatial arrangement of reefs, the settlement; however, these patterns are likely to vary greatly expectation would be a reduction in dispersal distances from place-to-place and projections of how oceanographic and the spatial scale of connectivity. Small increase in features will change in the future lack sufficient certainty and resolution to make robust predictions. Connectivity could also be compromised by the increased fragmentation Communicated by Ecology Editor Prof. Peter Mumby of reef habitat due to the effects of coral bleaching and ocean acidification. Changes to the spatial and temporal P. L. Munday ( H ) • J. M. -
Complex Food Webs in Highly Diversified Coral Reefs
Food Webs 8 (2016) 12–22 Contents lists available at ScienceDirect Food Webs journal homepage: www.journals.elsevier.com/food-webs Complex food webs in highly diversified coral reefs: Insights from δ13C and δ15N stable isotopes Marine J. Briand a,⁎, Xavier Bonnet b, Gaël Guillou c,YvesLetourneura a Université de la Nouvelle-Calédonie, Laboratoire LIVE, LABEX Corail, BP R4, 98851 Nouméa cedex, New Caledonia b Centre d'Etudes Biologiques de Chizé, CEBC-CNRS UPR 1934, 79360 Villers en Bois, France c Littoral Environnement et Sociétés (LIENSs), UMR 7266 CNRS-Université La Rochelle, 2 rue Olympe de Gouges, 17000 La Rochelle, France article info abstract Article history: We studied the trophic network architecture of the coral reef ecosystem of the New Caledonian lagoon. To en- Received 15 January 2016 compass the main tropic levels, we assayed carbon and nitrogen stable isotopes in various organic matter Received in revised form 1 July 2016 sources, intermediate consumers (invertebrates and fish), and 19 species of predatory fish (total of 1229 sam- Accepted 4 July 2016 ples). At each level, wide range of variations for δ13Candδ15N suggested multiple sources for the OM, and com- Available online 7 July 2016 plex trophic relationships among the different organisms. Despite this complexity, four trophic structures were identified. 1) The predominant reef benthic food web (R-BFW) based on the OM produced by algal turf supplies Keywords: fi Trophic networks most of intermediate consumers and all anguilliform sh studied. 2) The sedimentary benthic food web (S-BFW), Isotopic ratios and 3) the lagoon pelagic food web (L-PFW), respectively based on sedimentary OM (SOM) and particulate OM Organic matter sources (POM) involve a wide range of organisms and represent complementary food webs for most anguilliform fish. -
Marine and Estuarine Fish Fauna of Tamil Nadu, India
Proceedings of the International Academy of Ecology and Environmental Sciences, 2018, 8(4): 231-271 Article Marine and estuarine fish fauna of Tamil Nadu, India 1,2 3 1 1 H.S. Mogalekar , J. Canciyal , D.S. Patadia , C. Sudhan 1Fisheries College and Research Institute, Thoothukudi - 628 008, Tamil Nadu, India 2College of Fisheries, Dholi, Muzaffarpur - 843 121, Bihar, India 3Central Inland Fisheries Research Institute, Barrackpore, Kolkata - 700 120, West Bengal, India E-mail: [email protected] Received 20 June 2018; Accepted 25 July 2018; Published 1 December 2018 Abstract Varied marine and estuarine ecosystems of Tamil Nadu endowed with diverse fish fauna. A total of 1656 fish species under two classes, 40 orders, 191 families and 683 geranra reported from marine and estuarine waters of Tamil Nadu. In the checklist, 1075 fish species were primary marine water and remaining 581 species were diadromus. In total, 128 species were reported under class Elasmobranchii (11 orders, 36 families and 70 genera) and 1528 species under class Actinopterygii (29 orders, 155 families and 613 genera). The top five order with diverse species composition were Perciformes (932 species; 56.29% of the total fauna), Tetraodontiformes (99 species), Pleuronectiforms (77 species), Clupeiformes (72 species) and Scorpaeniformes (69 species). At the family level, the Gobiidae has the greatest number of species (86 species), followed by the Carangidae (65 species), Labridae (64 species) and Serranidae (63 species). Fishery status assessment revealed existence of 1029 species worth for capture fishery, 425 species worth for aquarium fishery, 84 species worth for culture fishery, 242 species worth for sport fishery and 60 species worth for bait fishery. -
(Percomorpha: Apogonidae) Based on Molecular Analyses and Comparative Reevaluation of Morphological Characters
Zootaxa 3846 (2): 151–203 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3846.2.1 http://zoobank.org/urn:lsid:zoobank.org:pub:3844E8F1-A20C-44B4-9B47-B170F5A7C0C2 Revision of the systematics of the cardinalfishes (Percomorpha: Apogonidae) based on molecular analyses and comparative reevaluation of morphological characters KOHJI MABUCHI1, THOMAS H. FRASER2,3, HAYEUN SONG1, YOICHIRO AZUMA1 & MUTSUMI NISHIDA1,4 1Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan. E-mail: [email protected] 2Florida Museum of Natural History, University of Florida, Dickinson Hall, Museum Road, Gainesville, Florida, 32611, United States 3Mote Marine Laboratory, 1600 Ken Thompson Parkway, Sarasota, Florida 34236, United States. E-mail: [email protected] 4University of the Ryukyus, 1 Senbaru, Nishihara-cho, Okinawa 903-0213, Japan Table of contents Abstract . 152 Introduction . 152 Material and methods . 155 Results . 163 Discussion . 171 Family, subfamily and tribal morphological diagnoses, general distribution and remarks . 173 1. FAMILY . 173 Family Apogonidae Günther 1859 . 173 2. SUBFAMILIES . 174 Key to the subfamilies of Apogonidae . 174 Amioidinae new subfamily Fraser & Mabuchi . 175 Subfamily Apogoninae Günther 1859 . 175 Paxtoninae new subfamily Fraser & Mabuchi . 176 Subfamily Pseudamiinae Smith 1954 . 177 3. APOGONINAE TRIBES ALL NEW . 178 Tribe Apogonichthyini Snodgrass & Heller 1905 . 178 Tribe Apogonini Günther 1859 . 178 Tribe Archamiini new name Fraser & Mabuchi . 179 Tribe Cheilodipterini Bleeker 1856 . 180 Tribe Glossamiini new name Fraser & Mabuchi . 180 Tribe Gymnapogonini Whitley 1941 . 181 Tribe Lepidamiini new name Fraser & Mabuchi . -
The Kagoshima University Museum No
Bulletin of the Kagoshima University Museum No. 9 A total of 1,277 species, including 129 species that represent the first reliable records from the island on the basis of Annotated Checklist of Marine and Freshwater Fishes Yaku-shima Island ISSN-L 2188-9074 collected specimens and/or underwater photographs, are listed with citation of literature, registration numbers, sizes, ANNOTATED CHECKLIST OF MARINE AND FRESHWATER FISHES OF localities in the island, and nomenclatural, taxonomic, and ecological remarks. Color photographs of all the 129 YAKU-SHIMA ISLAND IN THE OSUMI ISLANDS, species newly recorded from the island are provided. KAGOSHIMA, SOUTHERN JAPAN, WITH 129 NEW RECORDS HIROYUKI MOTOMURA AND SHIGERU HARAZAKI Hiroyuki Motomura • Shigeru Harazaki February 2017 The Kagoshima University Museum Cover photograph: Cephalopholis sonnerati in a wreck off Isso, Yaku-shima island. Photo by S. Harazaki Back cover photograph: Males of Pseudanthias hypselosoma at 15 m depth off Isso, Yaku-shima island. Photo by S. Harazaki Bulletin of the Kagoshima University Museum No. 9 ISSN-L 2188-9074 Annotated checklist of marine and freshwater fishes of Yaku-shima island in the Osumi Islands, Kagoshima, southern Japan, with 129 new records Hiroyuki Motomura1, 3 and Shigeru Harazaki2 1The Kagoshima University Museum, 1–21–30 Korimoto, Kagoshima 890–0065, Japan E-mail: [email protected] 2Yakushima Diving Service “Mori to Umi”, 2473–294 Miyanoura, Yakushima, Kumage, Kagoshima 891–4205, Japan 3Corresponding author Abstract The second edition of an annotated checklist of marine and freshwater fishes of Yaku-shima island in the Osumi Group, Kagoshima Prefecture, southern Japan, was compiled from specimen and literature surveys. -
Checklist of the Shore Fishes of New Caledonia
Plates 15/1 & 15/2 Checklist of the shore fishes of New Caledonia Ronald FRICKE J & Michel KULBICKI 2 J Ichthyology, Staatliches Museumfiir Naturkunde, Rosenstein 1,70191 Stuttgart, Germany [email protected] 2IRD, UR128, Universite de Perpignan, 52, Avenue Paul Alduy, 66860 Perpignan Cedex, France michel.kulbicki@univ-perpJr The present checklist includes the fish species known from the upper 100 m of the New Caledonian seas. Some deep-sea fishes which are occasionally found in shallow water (e.g. Loyalty Islands), high sea species which only rarely enter coastal waters, or freshwater fish species which may be found in estuaries, are excluded from this list. The geographical distribution of the shore fishes of New Caledonia is discussed by Kulbicki (in press). A detailed annotated checklist of all New Caledonian fish species including distribution data, litera ture references and material lists is in preparation by R. Fricke. In the present checklist of shore fish species, all records which are verified either by museum specimens or by confirmation by revising authors, are included. Families are arranged systematically according to Nelson (2006), and species alphabetically under the family names. Doubtful records are discussed after the family name. The names which have been applied to New Caledonian shore fish species in the literature are either list ed as valid species, or as synonyms or misidentifications in parentheses behind the species name. In the checklist, reference is given to materials in the collections of the Australian Museum Sydney (AMS), the Museum National d'Histoire Naturelle Paris (MNHN), and the Staatliches Museum flir Naturkunde Stuttgart (SMNS), in order to document new records.