Oxidative Stress-Induced P53 Activity Is Enhanced by a Redox-Sensitive TP53INP1 Sumoylation
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SUMO-1 Regulates the Conformational Dynamics of Thymine-DNA
Smet-Nocca et al. BMC Biochemistry 2011, 12:4 http://www.biomedcentral.com/1471-2091/12/4 RESEARCHARTICLE Open Access SUMO-1 regulates the conformational dynamics of Thymine-DNA Glycosylase regulatory domain and competes with its DNA binding activity Caroline Smet-Nocca1, Jean-Michel Wieruszeski2, Hélène Léger1,3, Sebastian Eilebrecht1,3, Arndt Benecke1,3* Abstract Background: The human thymine-DNA glycosylase (TDG) plays a dual role in base excision repair of G:U/T mismatches and in transcription. Regulation of TDG activity by SUMO-1 conjugation was shown to act on both functions. Furthermore, TDG can interact with SUMO-1 in a non-covalent manner. Results: Using NMR spectroscopy we have determined distinct conformational changes in TDG upon either covalent sumoylation on lysine 330 or intermolecular SUMO-1 binding through a unique SUMO-binding motif (SBM) localized in the C-terminal region of TDG. The non-covalent SUMO-1 binding induces a conformational change of the TDG amino-terminal regulatory domain (RD). Such conformational dynamics do not exist with covalent SUMO-1 attachment and could potentially play a broader role in the regulation of TDG functions for instance during transcription. Both covalent and non-covalent processes activate TDG G:U repair similarly. Surprisingly, despite a dissociation of the SBM/SUMO-1 complex in presence of a DNA substrate, SUMO-1 preserves its ability to stimulate TDG activity indicating that the non-covalent interactions are not directly involved in the regulation of TDG activity. SUMO-1 instead acts, as demonstrated here, indirectly by competing with the regulatory domain of TDG for DNA binding. -
Yeast Genome Gazetteer P35-65
gazetteer Metabolism 35 tRNA modification mitochondrial transport amino-acid metabolism other tRNA-transcription activities vesicular transport (Golgi network, etc.) nitrogen and sulphur metabolism mRNA synthesis peroxisomal transport nucleotide metabolism mRNA processing (splicing) vacuolar transport phosphate metabolism mRNA processing (5’-end, 3’-end processing extracellular transport carbohydrate metabolism and mRNA degradation) cellular import lipid, fatty-acid and sterol metabolism other mRNA-transcription activities other intracellular-transport activities biosynthesis of vitamins, cofactors and RNA transport prosthetic groups other transcription activities Cellular organization and biogenesis 54 ionic homeostasis organization and biogenesis of cell wall and Protein synthesis 48 plasma membrane Energy 40 ribosomal proteins organization and biogenesis of glycolysis translation (initiation,elongation and cytoskeleton gluconeogenesis termination) organization and biogenesis of endoplasmic pentose-phosphate pathway translational control reticulum and Golgi tricarboxylic-acid pathway tRNA synthetases organization and biogenesis of chromosome respiration other protein-synthesis activities structure fermentation mitochondrial organization and biogenesis metabolism of energy reserves (glycogen Protein destination 49 peroxisomal organization and biogenesis and trehalose) protein folding and stabilization endosomal organization and biogenesis other energy-generation activities protein targeting, sorting and translocation vacuolar and lysosomal -
T-Cell Receptor (TCR) Signaling Promotes the Assembly of Ranbp2
RESEARCH ARTICLE T-cell receptor (TCR) signaling promotes the assembly of RanBP2/RanGAP1- SUMO1/Ubc9 nuclear pore subcomplex via PKC--mediated phosphorylation of RanGAP1 Yujiao He1, Zhiguo Yang1†, Chen-si Zhao1†, Zhihui Xiao1†, Yu Gong1, Yun-Yi Li1, Yiqi Chen1, Yunting Du1, Dianying Feng1, Amnon Altman2, Yingqiu Li1* 1MOE Key Laboratory of Gene Function and Regulation, Guangdong Province Key Laboratory of Pharmaceutical Functional Genes, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China; 2Center for Cancer Immunotherapy, La Jolla Institute for Immunology, La Jolla, United States Abstract The nuclear pore complex (NPC) is the sole and selective gateway for nuclear transport, and its dysfunction has been associated with many diseases. The metazoan NPC subcomplex RanBP2, which consists of RanBP2 (Nup358), RanGAP1-SUMO1, and Ubc9, regulates the assembly and function of the NPC. The roles of immune signaling in regulation of NPC remain poorly understood. Here, we show that in human and murine T cells, following T-cell receptor (TCR) stimulation, protein kinase C-q (PKC-q) directly phosphorylates RanGAP1 to facilitate RanBP2 subcomplex assembly and nuclear import and, thus, the nuclear translocation of AP-1 transcription *For correspondence: factor. Mechanistically, TCR stimulation induces the translocation of activated PKC-q to the NPC, 504 506 [email protected] where it interacts with and phosphorylates RanGAP1 on Ser and Ser . RanGAP1 phosphorylation increases its binding affinity for Ubc9, thereby promoting sumoylation of RanGAP1 †These authors contributed and, finally, assembly of the RanBP2 subcomplex. Our findings reveal an unexpected role of PKC-q equally to this work as a direct regulator of nuclear import and uncover a phosphorylation-dependent sumoylation of Competing interests: The RanGAP1, delineating a novel link between TCR signaling and assembly of the RanBP2 NPC authors declare that no subcomplex. -
Identifying SUMO Protease Targets and Investigating E3 Ligase Interactions
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2014 Identifying SUMO Protease Targets and Investigating E3 Ligase Interactions Mark Guillotte College of William & Mary - Arts & Sciences Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Molecular Biology Commons Recommended Citation Guillotte, Mark, "Identifying SUMO Protease Targets and Investigating E3 Ligase Interactions" (2014). Dissertations, Theses, and Masters Projects. Paper 1539626956. https://dx.doi.org/doi:10.21220/s2-wrgj-tz43 This Thesis is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Identifying SUMO protease targets and investigating E3 ligase interactions Mark Guillotte Baton Rouge, Louisiana Bachelors of Science, Louisiana State University, 2010 A Thesis presented to the Graduate Faculty of the College of William and Mary in Candidacy for the Degree of Master of Science Department of Biology The College of William and Mary January 2014 APPROVAL PAGE This Thesis is submitted in partial fulfillment of the requirements for the degree of Master of Science Mark Guillotte Approved by^he Committee, January 2014 (be Chair Associate Professor Oliver Kerseher, Biology The College of William and Mary ' oVY wG ..G S l1m>. rofessor Lizabeth Allison, Biology The College of William and Mary Professor Diane Shakes, Biology The College of William and Mary ---------- Assistant Professor Shanta Hinton,Biology The College of William and Mary COMPLIANCE PAGE Research approved by Steve Kaattari Protocol number(s): IBC-2012-10-08-8156-opkers Date(s) of approval: 2013-11-02 ABSTRACT Posttranslational modification by the Small Ubiquitin-like Modifier (SUMO) is a pervasive mechanism for controlling protein function. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
UBA2 Activates Wnt/ Β-Catenin Signaling Pathway
UBA2 Activates Wnt/ β-catenin Signaling Pathway during Protection of R28 Retinal Precursor Cells from Hypoxia by Extracellular Vesicles derived from Placental Mesenchymal Stem Cells Kyungmin Koh CHA University Mira Park CHA University Eun Soo Bae CHA University Van-An Duong Gachon University Jong-Moon Park Gachon University Hookeun Lee Gachon University Helen Lew ( [email protected] ) CHA university https://orcid.org/0000-0003-0121-3000 Research Keywords: Exosome, hPMSCs, Optic nerve injury, Retinal precursor cells, UBA2, Wnt/β-catenin DOI: https://doi.org/10.21203/rs.3.rs-33694/v3 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/23 Abstract Background: Stem cell transplantation has been proposed as an alternative treatment for intractable optic nerve disorders characterized by irrecoverable loss of cells. Mesenchymal stem cells, with varying tissue regeneration and recovery capabilities, are being considered for potential cell therapies. To overcome the limitations of cell therapy, we isolated exosomes from human placenta–derived mesenchymal stem cells (hPMSCs), and investigated their therapeutic effects in R28 cells (retinal precursor cells) exposed to CoCl2. Method: After nine hours of exposure to CoCl2, the hypoxic damaged R28 cells were divided into non treatment group (CoCl2+R28 cells) and treatment group (CoCl2+R28 cells treated with exosome). Immunoblot analysis was performed for Pcna, Hif-1α, Vegf, Vimentin, Thy-1, Gap43, Ermn, Neuro≈ament, Wnt3a, β-catenin, phospo-GSK3β, Lef-1, UBA2, Skp1, βTrcp, and ubiquitin. The proteomes of each group were analyzed by liquid chromatography/tandem mass (LC-MS/MS) spectrometry. Differentially expressed proteins (DEPs) were detected by label-free quantiƒcation and the interactions of the proteins were examined through signal transduction pathway and gene ontology analysis. -
Mir-155 Targets TP53INP1 to Regulate Liver Cancer Stem Cell Acquisition and Self-Renewal ⇑ Fengchao Liu, Xin Kong, Lin Lv, Jian Gao
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS Letters 589 (2015) 500–506 journal homepage: www.FEBSLetters.org MiR-155 targets TP53INP1 to regulate liver cancer stem cell acquisition and self-renewal ⇑ Fengchao Liu, Xin Kong, Lin Lv, Jian Gao Department of Gastroenterology, Second Affiliated Hospital, Chongqing Medical University, Chongqing, China article info abstract Article history: In liver cancer, miR-155 up-regulation can regulate cancer-cell invasion. However, whether miR-155 Received 29 October 2014 expression is associated with liver cancer stem cells (CSCs) remains unknown. Here, we show that Revised 5 January 2015 miR-155 expression is up-regulated in tumor spheres. Knock-down of miR-155 resulted in suppres- Accepted 9 January 2015 sion of tumor sphere formation, through a decrease in the proportion of CD90+ and CD133+ CSCs and Available online 17 January 2015 in the expression of Oct4, whereas miR-155 overexpression had the opposite effect. TP53INP1 was Edited by Quan Chen determined to be involved in the CSCs-like properties that were regulated by miR-155. Thus, miR- 155 may play an important role in promoting the generation of stem cell-like cells and their self- renewal by targeting the gene TP53INP1. Keywords: Liver cancer stem cell Ó 2015 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved. MiR-155 Tumor Protein 53-Induced Nuclear Protein 1 Tumor sphere Liver cancer 1. Introduction plants [10]. Recently, increasing studies have revealed that many miRNAs play crucial roles in tumorigenesis [11,12], including CSCs Hepatocellular carcinoma (HCC) is the sixth most prevalent [13,14]. -
The E3 Ligase PIAS1 Regulates P53 Sumoylation to Control Stress-Induced Apoptosis of Lens
fcell-09-660494 June 14, 2021 Time: 13:5 # 1 ORIGINAL RESEARCH published: 14 June 2021 doi: 10.3389/fcell.2021.660494 The E3 Ligase PIAS1 Regulates p53 Sumoylation to Control Stress-Induced Apoptosis of Lens Edited by: Wolfgang Knabe, Epithelial Cells Through the Universität Münster, Germany Proapoptotic Regulator Bax Reviewed by: Guillaume Bossis, † † † † † Centre National de la Recherche Qian Nie , Huimin Chen , Ming Zou , Ling Wang , Min Hou , Jia-Wen Xiang, Scientifique (CNRS), France Zhongwen Luo, Xiao-Dong Gong, Jia-Ling Fu, Yan Wang, Shu-Yu Zheng, Yuan Xiao, Stefan Müller, Yu-Wen Gan, Qian Gao, Yue-Yue Bai, Jing-Miao Wang, Lan Zhang, Xiang-Cheng Tang, Goethe University Frankfurt, Germany Xuebin Hu, Lili Gong, Yizhi Liu* and David Wan-Cheng Li*‡ Leena Latonen, University of Eastern Finland, Finland State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China *Correspondence: David Wan-Cheng Li Protein sumoylation is one of the most important post-translational modifications [email protected] Yizhi Liu regulating many biological processes (Flotho A & Melchior F. 2013. Ann Rev. Biochem. [email protected] 82:357–85). Our previous studies have shown that sumoylation plays a fundamental †These authors have contributed role in regulating lens differentiation (Yan et al., 2010. PNAS, 107(49):21034-9.; equally to this work Gong et al., 2014. PNAS. 111(15):5574–9). Whether sumoylation is implicated in lens ‡ ORCID: David Wan-Cheng Li pathogenesis remains elusive. Here, we present evidence to show that the protein orcid.org/0000-0002-7398-7630 inhibitor of activated STAT-1 (PIAS1), a E3 ligase for sumoylation, is implicated in regulating stress-induced lens pathogenesis. -
The Role of Sumoylation of DNA Topoisomerase Iiα C-Terminal Domain in the Regulation of Mitotic Kinases In
SUMOylation at the centromere: The role of SUMOylation of DNA topoisomerase IIα C-terminal domain in the regulation of mitotic kinases in cell cycle progression. By Makoto Michael Yoshida Submitted to the graduate degree program in the Department of Molecular Biosciences and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Doctor of Philosophy. ________________________________________ Chairperson: Yoshiaki Azuma, Ph.D. ________________________________________ Roberto De Guzman, Ph.D. ________________________________________ Kristi Neufeld, Ph.D. _________________________________________ Berl Oakley, Ph.D. _________________________________________ Blake Peterson, Ph.D. Date Defended: July 12, 2016 The Dissertation Committee for Makoto Michael Yoshida certifies that this is the approved version of the following dissertation: SUMOylation at the centromere: The role of SUMOylation of DNA topoisomerase IIα C-terminal domain in the regulation of mitotic kinases in cell cycle progression. ________________________________________ Chairperson: Yoshiaki Azuma, Ph.D. Date approved: July 12, 2016 ii ABSTRACT In many model systems, SUMOylation is required for proper mitosis; in particular, chromosome segregation during anaphase. It was previously shown that interruption of SUMOylation through the addition of the dominant negative E2 SUMO conjugating enzyme Ubc9 in mitosis causes abnormal chromosome segregation in Xenopus laevis egg extract (XEE) cell-free assays, and DNA topoisomerase IIα (TOP2A) was identified as a substrate for SUMOylation at the mitotic centromeres. TOP2A is SUMOylated at K660 and multiple sites in the C-terminal domain (CTD). We sought to understand the role of TOP2A SUMOylation at the mitotic centromeres by identifying specific binding proteins for SUMOylated TOP2A CTD. Through affinity isolation, we have identified Haspin, a histone H3 threonine 3 (H3T3) kinase, as a SUMOylated TOP2A CTD binding protein. -
Mir-504 Promotes Tumour Growth and Metastasis in Human Osteosarcoma by Targeting TP53INP1
ONCOLOGY REPORTS 38: 2993-3000, 2017 miR-504 promotes tumour growth and metastasis in human osteosarcoma by targeting TP53INP1 QINGCHUN CAI, SIXIANG ZENG, XING DAI, JUNLONG WU and WEI MA Department of Orthopaedics, First Affiliated Hospital of the Medical College, Xi'an Jiaotong University, Xi'an, Shaanxi 710061, P.R. China Received March 18, 2017; Accepted September 4, 2017 DOI: 10.3892/or.2017.5983 Abstract. An increasing number of studies have demonstrated and the second peak is at 75-79 years of age (1,2). The primary that microRNAs participate in the development of osteosar- tumour originates in the distal femur, proximal tibia or humerus coma by acting as tumour suppressor or tumour-promoting and its rapid cell division may contribute to the oncogenesis of genes. We investigated the role of miR-504 in the growth osteosarcoma during childhood (3). Adjuvant chemotherapy and metastasis of osteosarcoma. The expression of miR-504 following surgery, has improved the long-term survival rates in clinical osteosarcoma samples was higher than that in the from <20 to 70% in localized osteosarcoma. However, this adjacent normal tissue and correlated with tumour size and combined therapy has shown limited progress in the long-term clinical stage. Tumour protein p53-inducible nuclear protein 1 survival rates of metastatic osteosarcoma cases, which account (TP53INP1) was downregulated in the clinical osteosarcoma for one-quarter of all patients at the time of initial diagnosis. The samples compared with the adjacent normal tissues and was higher incidence of osteosarcoma in children and adolescents, consistently correlated with the clinical stage. The results its tendency to metastasize and the poor prognosis in metastatic of dual-luciferase reporter assay and western blot analysis cases render osteosarcoma the leading cause of cancer-related demonstrated that the TP53INP1 gene is a direct target of deaths in childhood, although it accounts only for 5% of child- miR-504. -
Quantitative SUMO Proteomics Reveals the Modulation of Several
www.nature.com/scientificreports OPEN Quantitative SUMO proteomics reveals the modulation of several PML nuclear body associated Received: 10 October 2017 Accepted: 28 March 2018 proteins and an anti-senescence Published: xx xx xxxx function of UBC9 Francis P. McManus1, Véronique Bourdeau2, Mariana Acevedo2, Stéphane Lopes-Paciencia2, Lian Mignacca2, Frédéric Lamoliatte1,3, John W. Rojas Pino2, Gerardo Ferbeyre2 & Pierre Thibault1,3 Several regulators of SUMOylation have been previously linked to senescence but most targets of this modifcation in senescent cells remain unidentifed. Using a two-step purifcation of a modifed SUMO3, we profled the SUMO proteome of senescent cells in a site-specifc manner. We identifed 25 SUMO sites on 23 proteins that were signifcantly regulated during senescence. Of note, most of these proteins were PML nuclear body (PML-NB) associated, which correlates with the increased number and size of PML-NBs observed in senescent cells. Interestingly, the sole SUMO E2 enzyme, UBC9, was more SUMOylated during senescence on its Lys-49. Functional studies of a UBC9 mutant at Lys-49 showed a decreased association to PML-NBs and the loss of UBC9’s ability to delay senescence. We thus propose both pro- and anti-senescence functions of protein SUMOylation. Many cellular mechanisms of defense have evolved to reduce the onset of tumors and potential cancer develop- ment. One such mechanism is cellular senescence where cells undergo cell cycle arrest in response to various stressors1,2. Multiple triggers for the onset of senescence have been documented. While replicative senescence is primarily caused in response to telomere shortening3,4, senescence can also be triggered early by a number of exogenous factors including DNA damage, elevated levels of reactive oxygen species (ROS), high cytokine signa- ling, and constitutively-active oncogenes (such as H-RAS-G12V)5,6. -
Insights Into the Role and Mechanism of the AAA+ Adaptor Clps
Insights into the role and mechanism of the AAA+ adaptor ClpS by Jennifer Yuan Hou Sc.B. Biochemistry Brown University, 2002 SUBMITTED TO THE DEPARTMENT OF BIOLOGY IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY AT THE MASSACHUSETTS INSTITUTE OF TECHNOLOGY JUNE 2009 © 2009 Jennifer Yuan Hou. All Rights Reserved. The author hereby grants to MIT permission to reproduce and to distribute publicly paper and electronic copies of this thesis document in whole or in part in any medium now known or hereafter created. Signature of Author:_______________________________________________________ Department of Biology May 22, 2009 Certified by:_____________________________________________________________ Tania A. Baker E. C. Whitehead Professor of Biology Thesis Supervisor Accepted by:_____________________________________________________________ Stephen P. Bell Professor of Biology Co-Chair, Graduate Committee 1 2 Insights into the role and mechanism of the AAA+ adaptor ClpS by Jennifer Yuan Hou Submitted to the Department of Biology on May 22, 2009 in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy at the Massachusetts Institute of Technology ABSTRACT Protein degradation is a vital process in cells for quality control and participation in regulatory pathways. Intracellular ATP-dependent proteases are responsible for regulated degradation and are highly controlled in their function, especially with respect to substrate selectivity. Adaptor proteins that can associate with the proteases add an additional layer of control to substrate selection. Thus, understanding the mechanism and role of adaptor proteins is a critical component to understanding how proteases choose their substrates. In this thesis, I examine the role of the intracellular protease ClpAP and its adaptor ClpS in Escherichia coli.