BRCC3 Acts As a Prognostic Marker in Nasopharyngeal
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Identification and Characterization of TPRKB Dependency in TP53 Deficient Cancers
Identification and Characterization of TPRKB Dependency in TP53 Deficient Cancers. by Kelly Kennaley A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Molecular and Cellular Pathology) in the University of Michigan 2019 Doctoral Committee: Associate Professor Zaneta Nikolovska-Coleska, Co-Chair Adjunct Associate Professor Scott A. Tomlins, Co-Chair Associate Professor Eric R. Fearon Associate Professor Alexey I. Nesvizhskii Kelly R. Kennaley [email protected] ORCID iD: 0000-0003-2439-9020 © Kelly R. Kennaley 2019 Acknowledgements I have immeasurable gratitude for the unwavering support and guidance I received throughout my dissertation. First and foremost, I would like to thank my thesis advisor and mentor Dr. Scott Tomlins for entrusting me with a challenging, interesting, and impactful project. He taught me how to drive a project forward through set-backs, ask the important questions, and always consider the impact of my work. I’m truly appreciative for his commitment to ensuring that I would get the most from my graduate education. I am also grateful to the many members of the Tomlins lab that made it the supportive, collaborative, and educational environment that it was. I would like to give special thanks to those I’ve worked closely with on this project, particularly Dr. Moloy Goswami for his mentorship, Lei Lucy Wang, Dr. Sumin Han, and undergraduate students Bhavneet Singh, Travis Weiss, and Myles Barlow. I am also grateful for the support of my thesis committee, Dr. Eric Fearon, Dr. Alexey Nesvizhskii, and my co-mentor Dr. Zaneta Nikolovska-Coleska, who have offered guidance and critical evaluation since project inception. -
Loss of BCL-3 Sensitises Colorectal Cancer Cells to DNA Damage, Revealing A
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.03.454995; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Loss of BCL-3 sensitises colorectal cancer cells to DNA damage, revealing a role for BCL-3 in double strand break repair by homologous recombination Authors: Christopher Parker*1, Adam C Chambers*1, Dustin Flanagan2, Tracey J Collard1, Greg Ngo3, Duncan M Baird3, Penny Timms1, Rhys G Morgan4, Owen Sansom2 and Ann C Williams1. *Joint first authors. Author affiliations: 1. Colorectal Tumour Biology Group, School of Cellular and Molecular Medicine, Faculty of Life Sciences, Biomedical Sciences Building, University Walk, University of Bristol, Bristol, BS8 1TD, UK 2. Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Bearsden Glasgow, G61 1BD UK 3. Division of Cancer and Genetics, School of Medicine, Cardiff University, Cardiff, CF14 4XN UK 4. School of Life Sciences, University of Sussex, Sussex House, Falmer, Brighton, BN1 9RH UK 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.08.03.454995; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract (250 words) Objective: The proto-oncogene BCL-3 is upregulated in a subset of colorectal cancers (CRC) and increased expression of the gene correlates with poor patient prognosis. The aim is to investigate whether inhibiting BCL-3 can increase the response to DNA damage in CRC. -
Identification and Characterization of Missense Alterations in the BRCA1
633 ORIGINAL ARTICLE Identification and characterization of missense alterations in the BRCA1 associated RING domain (BARD1) gene in breast and ovarian cancer M K Sauer, I L Andrulis ............................................................................................................................... J Med Genet 2005;42:633–638. doi: 10.1136/jmg.2004.030049 Background: BRCA1 associated RING domain protein (BARD1) was originally identified due to its interaction with the RING domain of BRCA1. BARD1 is required for S phase progression, contact inhibition and normal nuclear division, as well as for BRCA1 independent, p53 dependent apoptosis. See end of article for Methods: To investigate whether alterations in BARD1 are involved in human breast and ovarian cancer, authors’ affiliations ....................... we used single strand conformation polymorphism analysis and sequencing on 35 breast tumours and cancer cell lines and on 21 ovarian tumours. Correspondence to: Results: Along with the G2355C (S761N) missense mutation previously identified in a uterine cancer, we Dr M K Sauer, Samuel Lunenfeld Research found two other variants in breast cancers, T2006C (C645R) and A2286G (I738V). The T2006C (C645R) Institute, Mount Sinai mutation was also found in one ovarian tumour. A variant of uncertain consequence, G1743C (C557S), Hospital, 600 University was found to be homozygous or hemizygous in an ovarian tumour. Eleven variants of BARD1 were Ave, Toronto, Ontario, M5G 1X5, Canada; characterised with respect to known functions of BARD1. None of the variants appears to affect [email protected] localisation or interaction with BRCA1; however, putative disease associated alleles appear to affect the stability of p53. These same mutations also appear to abrogate the growth suppressive and apoptotic Received activities of BARD1. -
Functional Characterization of Full-Length BARD1 Strengthens Its
Journal of Cancer 2020, Vol. 11 1495 Ivyspring International Publisher Journal of Cancer 2020; 11(6): 1495-1504. doi: 10.7150/jca.36164 Research Paper Functional characterization of full-length BARD1 strengthens its role as a tumor suppressor in neuroblastoma Flora Cimmino1,2, Marianna Avitabile1,2, Vito Alessandro Lasorsa1,2, Lucia Pezone1, Antonella Cardinale1, Annalaura Montella2, Sueva Cantalupo3, Achille Iolascon1,2, Mario Capasso1,2,3 1. Dipartimento di Medicina Molecolare e Biotecnologie Mediche, Università degli Studi di Napoli “Federico II”, Naples, Italy 2. CEINGE Biotecnologie Avanzate, Naples, Italy 3. IRCCS SDN, Naples, Italy Corresponding author: Flora Cimmino, phD, University of Naples Federico II, Department of Molecular Medicine and Medical Biotechnology, CEINGE Biotecnologie Avanzate, Via Gaetano Salvatore, 486, 80145 Napoli Italy. Lab: +39 0813737736; Fax: +39 0813737804; Email: [email protected] © The author(s). This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2019.04.29; Accepted: 2019.11.12; Published: 2020.01.14 Abstract BARD1 is associated with the development of high-risk neuroblastoma patients. Particularly, the expression of full length (FL) isoform, FL BARD1, correlates to high-risk neuroblastoma development and its inhibition is sufficient to induce neuroblastoma cells towards a worst phenotype. Here we have investigated the mechanisms of FL BARD1 in neuroblastoma cell lines depleted for FL BARD1 expression. We have shown that FL BARD1 expression protects the cells from spontaneous DNA damage and from damage accumulated after irradiation. We demonstrated a role for FL BARD1 as tumor suppressor to prevent unscheduled mitotic entry of DNA damaged cells and to lead to death cells that have bypassed cell cycle checkpoints. -
BRCA1–BARD1 Regulates Axon Regeneration in Concert with the Gqα–DAG Signaling Network
Research Articles: Cellular/Molecular BRCA1–BARD1 regulates axon regeneration in concert with the Gqα–DAG signaling network https://doi.org/10.1523/JNEUROSCI.1806-20.2021 Cite as: J. Neurosci 2021; 10.1523/JNEUROSCI.1806-20.2021 Received: 13 July 2020 Revised: 20 January 2021 Accepted: 5 February 2021 This Early Release article has been peer-reviewed and accepted, but has not been through the composition and copyediting processes. The final version may differ slightly in style or formatting and will contain links to any extended data. Alerts: Sign up at www.jneurosci.org/alerts to receive customized email alerts when the fully formatted version of this article is published. Copyright © 2021 Sakai et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. Sakai et al., 1 1 BRCA1–BARD1 regulates axon regeneration in 2 concert with the GqD–DAG signaling network 3 4 Abbreviated Title: BRCA1–BARD1 regulates axon regeneration 5 6 Yoshiki Sakai, Hiroshi Hanafusa, Tatsuhiro Shimizu, Strahil Iv. 7 Pastuhov, Naoki Hisamoto, and Kunihiro Matsumoto 8 9 Division of Biological Science, Graduate School of Science, Nagoya University, 10 Chikusa-ku, Nagoya 464-8602, Japan 11 12 To whom correspondence should be addressed: 13 Kunihiro Matsumoto and Naoki Hisamoto 14 Division of Biological Science, Graduate School of Science, 15 Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan. 16 E-mail address: [email protected] (K. -
BARD1 in Cell Life and Death
Role of BARD1 in cell life and death Irmgard Irminger-Finger Biology of Aging Laboratory Department of Geriatrics University of Geneva Switzerland Age is the biggest risk factor for cancer DePinho, 2000 Cancer Risks for Men prostate From1950 1990 Cancer Risks for Women breast From1950 1990 Cancers of old age are different from young age cancers Cancer in old age has a different face than cancer in young age BCC Basal cell carcinoma SCC Squamous cell carcinoma DePinho, 2000 What could link epithelial cell derived cancers to aging? BARD1, not just another cancer predisposition gene Common pathways for cancer and aging? Accumulation of damage DNA damage DNA damage proliferation- DNA damage arrest repair senescence proliferation cancer elimination apoptosis Cellular aging BARD1 Summary • BARD1 structure • BARD1 repression studies • BARD1 overexpression studies • BARD1 dynamic localization • BARD1 induced upon stress • Non-correlated expression of BARD1 and BRCA1 • Role in spermatogenesis • BARD1 upregulation upon stress • Role in tumorigenesis • BARD1 a tumor antigen • BARD1 in cancer vaccine and genetherapy Conserved structures in BARD1 and BRCA1 Q>H RING ANK BRCT BARD1 66 95 53 97 77 91 conservation RING BRCT BRCA1 C>G No one like BARD1 RING ANK BRCT BARD1 BRCA1 Arabidopsis 2 hypoth.p. Arabidopsis CAC05430 C. elegans 3 hypoth. p. C. elegans 6 hypoth. p. C. elegans T15564 C. elegans T15566 Xenopus BARD1 Joukov, Livingston, PNAS, 2001 BRCA1 BARD1- BRCA1 heterodimer Rad51 PCNA ? RNA-Pol II p53 BAP1 Nuclear localization BACH1 RHA signals Granin BRCA2 motif BARD1 interaction Ankyrin repeats BRCT BRCA1 domain interaction Ubiquitin-ligase Polyadenylation activity A B C D BARD1 BRCA1 BARD1 BRCA1 BARD1 Bcl-3 Pol II/Holo CstF-50 NF-kB Replication? S-phase dots Transcription: mRNA Regulation of Pol II/Holo Interaction Processing? transcription? [Scully et al. -
Hyaluronan Mediated Motility Receptor (HMMR) Encodes an Evolutionarily Conserved Homeostasis, Mitosis, and Meiosis Regulator Rather Than a Hyaluronan Receptor
cells Review Hyaluronan Mediated Motility Receptor (HMMR) Encodes an Evolutionarily Conserved Homeostasis, Mitosis, and Meiosis Regulator Rather than a Hyaluronan Receptor 1 1 1, 1,2, Zhengcheng He , Lin Mei , Marisa Connell y and Christopher A. Maxwell * 1 Department of Pediatrics, University of British Columbia, Vancouver, BC V5Z 4H4, Canada; [email protected] (Z.H.); [email protected] (L.M.); [email protected] (M.C.) 2 Michael Cuccione Childhood Cancer Research Program, BC Children’s Hospital, Vancouver, BC V5Z 4H4, Canada * Correspondence: [email protected]; Tel.: +1-6048752000 (ext. 4691) Current position: Department of Neuroscience and Physiology, SUNY Upstate Medical University, Syracuse, y NY 13210, USA. Received: 3 March 2020; Accepted: 25 March 2020; Published: 28 March 2020 Abstract: Hyaluronan is an extracellular matrix component that absorbs water in tissues and engages cell surface receptors, like Cluster of Differentiation 44 (CD44), to promote cellular growth and movement. Consequently, CD44 demarks stem cells in normal tissues and tumor-initiating cells isolated from neoplastic tissues. Hyaluronan mediated motility receptor (HMMR, also known as RHAMM) is another one of few defined hyaluronan receptors. HMMR is also associated with neoplastic processes and its role in cancer progression is often attributed to hyaluronan-mediated signaling. But, HMMR is an intracellular, microtubule-associated, spindle assembly factor that localizes protein complexes to augment the activities of mitotic kinases, like polo-like kinase 1 and Aurora kinase A, and control dynein and kinesin motor activities. Expression of HMMR is elevated in cells prior to and during mitosis and tissues with detectable HMMR expression tend to be highly proliferative, including neoplastic tissues. -
BRE Facilitates Skeletal Muscle Regeneration by Promoting Satellite Cell Motility and Differentiation Lihai Xiao and Kenneth Ka Ho Lee*
© 2016. Published by The Company of Biologists Ltd | Biology Open (2016) 5, 100-111 doi:10.1242/bio.012450 RESEARCH ARTICLE BRE facilitates skeletal muscle regeneration by promoting satellite cell motility and differentiation Lihai Xiao and Kenneth Ka Ho Lee* ABSTRACT formed myofibers will further fuse with existing intact myofibers The function of the Bre gene in satellite cells was investigated during to repair the damaged muscle. The extent of this bioactivity is skeletal muscle regeneration. The tibialis anterior leg muscle depending on the severity of injury. In vitro, it is possible to follow was experimentally injured in Bre knockout mutant (BRE-KO) mice. the chronological and dynamic process of satellite cell migration, ’ It was established that the accompanying muscle regeneration was differentiation and fusion (O Connor et al., 2007; Bae et al., 2008). impaired as compared with their normal wild-type counterparts (BRE- Many proteins have been now identified to be important in the WT). There were significantly fewer pax7+ satellite cells and smaller regulation of satellite cell migration which includes: fibroblast newly formed myofibers present in the injury sites of BRE-KO mice. growth factor (FGF), hepatocyte growth factor (HGF) and IL-4 Bre was required for satellite cell fusion and myofiber formation. The (Lluri and Jaworski, 2005; Lafreniere et al., 2006). Components of cell fusion index and average length of newly-formed BRE-KO the extracellular matrix (such as fibronectin and laminin) and α myofibers were found to be significantly reduced as compared with chemokines (such as SDF-1 ) also play important roles in BRE-WT myofibers. -
A Computational Model for Classification of BRCA2 Variants Using Mouse Embryonic Stem Cell-Based Functional Assays
www.nature.com/npjgenmed ARTICLE OPEN A computational model for classification of BRCA2 variants using mouse embryonic stem cell-based functional assays Kajal Biswas1,5, Gary B. Lipton2,5, Stacey Stauffer1, Teresa Sullivan1, Linda Cleveland1, Eileen Southon1,3, Susan Reid1, ✉ ✉ Valentin Magidson4, Edwin S. Iversen Jr. 2 and Shyam K. Sharan 1 Sequencing-based genetic tests to identify individuals at increased risk of hereditary breast and ovarian cancers have resulted in the identification of more than 40,000 sequence variants of BRCA1 and BRCA2. A majority of these variants are considered to be variants of uncertain significance (VUS) because their impact on disease risk remains unknown, largely due to lack of sufficient familial linkage and epidemiological data. Several assays have been developed to examine the effect of VUS on protein function, which can be used to assess their impact on cancer susceptibility. In this study, we report the functional characterization of 88 BRCA2 variants, including several previously uncharacterized variants, using a well-established mouse embryonic stem cell (mESC)- based assay. We have examined their ability to rescue the lethality of Brca2 null mESC as well as sensitivity to six DNA damaging agents including ionizing radiation and a PARP inhibitor. We have also examined the impact of BRCA2 variants on splicing. In addition, we have developed a computational model to determine the probability of impact on function of the variants that can be used for risk assessment. In contrast to the previous VarCall models that are based on a single functional assay, we have developed a new platform to analyze the data from multiple functional assays separately and in combination. -
Isomerization of BRCA1-BARD1 Promotes Replication Fork Protection
University of Birmingham Isomerization of BRCA1-BARD1 promotes replication fork protection Daza-Martin, Manuel; Starowicz, Katarzyna; Jamshad, Mohammed; Tye, Stephanie; Ronson, George E; MacKay, Hannah L; Chauhan, Anoop Singh; Walker, Alexandra K; Stone, Helen R; Beesley, James F J; Coles, Jennifer L; Garvin, Alexander J; Stewart, Grant S; McCorvie, Thomas J; Zhang, Xiaodong; Densham, Ruth M; Morris, Joanna R DOI: 10.1038/s41586-019-1363-4 License: None: All rights reserved Document Version Peer reviewed version Citation for published version (Harvard): Daza-Martin, M, Starowicz, K, Jamshad, M, Tye, S, Ronson, GE, MacKay, HL, Chauhan, AS, Walker, AK, Stone, HR, Beesley, JFJ, Coles, JL, Garvin, AJ, Stewart, GS, McCorvie, TJ, Zhang, X, Densham, RM & Morris, JR 2019, 'Isomerization of BRCA1-BARD1 promotes replication fork protection', Nature, vol. 571, no. 7766, pp. 521-527. https://doi.org/10.1038/s41586-019-1363-4 Link to publication on Research at Birmingham portal Publisher Rights Statement: Checked for eligibility: 11/07/2019 https://www.nature.com/articles/s41586-019-1363-4 Daza-Martin, Manuel, et al. "Isomerization of BRCA1–BARD1 promotes replication fork protection." Nature (2019): 1. https://doi.org/10.1038/s41586-019-1363-4 General rights Unless a licence is specified above, all rights (including copyright and moral rights) in this document are retained by the authors and/or the copyright holders. The express permission of the copyright holder must be obtained for any use of this material other than for purposes permitted by law. •Users may freely distribute the URL that is used to identify this publication. •Users may download and/or print one copy of the publication from the University of Birmingham research portal for the purpose of private study or non-commercial research. -
Novel BRCA1 Mutations and More Frequent Intron-20 Alteration Found Among 236 Women from Western Poland
Oncogene (1997) 15, 1773 ± 1779 1997 Stockton Press All rights reserved 0950 ± 9232/97 $12.00 Novel BRCA1 mutations and more frequent intron-20 alteration found among 236 women from Western Poland Krzysztof Sobczak1, Piotr Kozl owski1, Marek Napieral a1, Jakub Czarny1, Marcin WozÂniak1, Mal gorzata Kapus cin ska1,2, Mal gorzataL os ko1, Magdalena Koziczak1, Anna Jasin ska1, Jolanta Powierska1, Ryszard Braczkowski3, Jan Br borowicz4, Dariusz Godlewski2, . e˛ Andrzej Mackiewicz5 and Wl odzimierz Krzyzosiak1 1Laboratory of Cancer Genetics, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Z. Noskowskiego 12/14, 61 ± 704 PoznanÂ; 2Cancer Epidemiology and Prevention Union, Wielkopolska Cancer Center, Garbary 15, 61 ± 866 PoznanÂ; 35-th Department of Internal Medicine, Silesian University School of Medicine, Bytom; 4Chair of Oncology, University School of Medical Sciences, La˛kowa 1/2 61-878 PoznanÂ; 5Department of Cancer Immunology, University School of Medical Sciences at Wielkopolska Cancer Center, Garbary 15, 61-866 PoznanÂ, Poland Three dierent novel BRCA1 mutations, ®ve independent most frequently form a favorable genetic background cases of the same 12 bp insertion-duplication in intron-20 for the disease. Also at increased risk are the carriers of and two novel rare BRCA1 sequence variants were one abnormal allele of the ataxia telangiectasia gene identi®ed among 122 Polish women with positive, in most (Swift et al., 1991), the carriers of rare minisatelite cases moderate family history of breast and/or ovarian allele at the HRAS1 locus (Krontiris et al., 1993) and cancer, 80 controls and 34 unselected breast cancer the members of Li Fraumeni families with germline tissue specimens. -
Literature Review of BARD1 As a Cancer Predisposing Gene with a Focus on Breast and Ovarian Cancers
G C A T T A C G G C A T genes Review Literature Review of BARD1 as a Cancer Predisposing Gene with a Focus on Breast and Ovarian Cancers 1,2,3, 1,2, 1,2 1,2,4, Wejdan M. Alenezi y , Caitlin T. Fierheller y, Neil Recio and Patricia N. Tonin * 1 Department of Human Genetics, McGill University, Montreal, QC H3A 0G4, Canada; [email protected] (W.M.A.); caitlin.fi[email protected] (C.T.F.); [email protected] (N.R.) 2 Cancer Research Program, The Research Institute of the McGill University Health Centre, Montreal, QC H4A 3J1, Canada 3 Department of Medical Laboratory Technology, Taibah University, Medina 42353, Saudi Arabia 4 Department of Medicine, McGill University, Montreal, QC H3A 0G4, Canada * Correspondence: [email protected]; Tel.: +1-514-934-1934 (ext. 44069) Contributed equally to the work. y Received: 30 June 2020; Accepted: 23 July 2020; Published: 27 July 2020 Abstract: Soon after the discovery of BRCA1 and BRCA2 over 20 years ago, it became apparent that not all hereditary breast and/or ovarian cancer syndrome families were explained by germline variants in these cancer predisposing genes, suggesting that other such genes have yet to be discovered. BRCA1-associated ring domain (BARD1), a direct interacting partner of BRCA1, was one of the earliest candidates investigated. Sequencing analyses revealed that potentially pathogenic BARD1 variants likely conferred a low–moderate risk to hereditary breast cancer, but this association is inconsistent. Here, we review studies of BARD1 as a cancer predisposing gene and illustrate the challenge of discovering additional cancer risk genes for hereditary breast and/or ovarian cancer.