Photosynthetic Action Spectra of Marine Algae*
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Algal Accessory Pigment Detection Using Aviris Image
ALGAL ACCESSORY PIGMENT DETECTION USING AVIRIS IMAGE-DERIVED SPECTRAL RADIANCE DATA hurie L. Richardson, Florida International University, Miami, Florida, and Vincent G. Ambrosia, JCWS, Inc., NASA Ames Research Center, Moffett Field, California. 1. INTRODUCTION Visual and derivative analyses of AVIRIS spectral data can be used to detect algal accessory pigments in squat ic communities (Richardson et al. 1994). This capability extends the use of remote sensing for the study of aquatic ecosystems by allowing detection of taxonomically significant pigment signatures which yield information about the type of algae present. Such information allows remote sensing-based assessment of squat ic ecosystem health, as in the detection of nuisance blooms of cyanobacteria (Dekker et al., 1992) or toxic blooms of dinoflagellates (Carder and Steward, 1985). Remote sensing of aquatic systems has traditionally focused on quantification of chlorophyll a, a photoreactive (and light-harvesting) pigment which is common to all algae as well as cyanobacteria (bIuegrcxm algae). Due to the ubiquitousness of this pigment within algae, chl a is routinely measured to estimate algal biomass both during ground-truthing and using various airborne or satellite based sensors (Clark, 1981; Smith and Baker, 1982; Galat and Verdin, 1989; Mittenzwey et al., 1992), including AVIRIS (Hamilton et al., 1993). Within the remote sensing and aquatic sciences communities, ongoing research has been performed to detect algal accessory pigments for assessment of algal population composition (Gieskew 1991; Millie et al., 1993; Richardson, 1996). This research is based on the fact that many algal accessory pigments are taxonomically significant, and all are spectrally unique (Foppen, 1971; Morton, 1975; Bj#mland and Liaaen- Jensen, 1989; Rowan, 1989), Aquatic scientists have been refining pigment analysis techniques, primarily high performance liquid chromatography, or HPLC, (e.g. -
Discovery of Chlorophyll D in Acaryochloris Marina And
Chem cal ist si ry y & h P B f i o o p l Miyashita et al., J Phys Chem Biophys 2014, 4:4 h a Journal of Physical Chemistry & y n s r i u c DOI: 10.4172/2161-0398.1000149 o s J ISSN: 2161-0398 Biophysics ResearchReview Article Article OpenOpen Access Access Discovery of Chlorophyll d in Acaryochloris marina and Chlorophyll f in a Unicellular Cyanobacterium, Strain KC1, Isolated from Lake Biwa Hideaki Miyashita1,2, Satoshi Ohkubo2, Hirohisa Komatsu3, Yuhta Sorimachi3, Daisuke Fukayama3, Daiki Fujinuma3, Shinya Akutsu3 and Masami Kobayashi3* 1Graduate School of Global and Environmental Studies, Kyoto University, Kyoto 606-8501, Japan 2Graduate School of Human and Environmental Studies, Kyoto University, Kyoto 606-8501, Japan 3Division of Materials Science, Faculty of Pure and Applied Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan Abstract In this review, we described the biological characteristics of a cyanobacterium Acaryochloris marina and a unicellular cyanobacterium strain KC1 and the possible photosynthetic systems of the cells based on the physicochemical properties of chlorophylls. Strain KC1 as well as Acaryochloris spp. in addition to Halomiclonema hongdechloris should contribute the understanding of photosynthesis utilizing far red light. Keywords: Acaryochloris marina; Chlorophyll a; Chlorophyll cyanobacteria distributed in marine or salty lakes, since it had only been a’; Chlorophyll d; Chlorophyll d’; Chlorophyll f; Cyanobacteria; found in the cyanobacteria in the genus Acaryochloris, and the strains Pheophytin a; Strain KC1 in Acaryochloris had only been isolated from saline environments but not from freshwater environments at all [4-7]. Actually, the strain A. Abbreviations: A. -
I Topic - Algal Pigments and Algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated By: Prof.(Dr) Shyam Nandan Prasad
Course- M.Sc. Botany Part -I Paper -I Topic - Algal Pigments and algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated by: Prof.(Dr) Shyam Nandan Prasad The algae were broadly divided by F.F.Fritsch (1935) into eleven classes according to their colour - 1. Chlorophyceae or green algae 2. Xanthophyceae or yellow-green algae 3. Chrysophyceae 4. Bacillariophyceae or golden-brown algae 5. Cryptophyceae 6. Dinophyceae 7. Chloromonadineae 8. Eugleninae 9. Phaeophyceae or brown algae 10. Rhodophyceae or red algae, and 11. Myxophyceae or blue-green algae Normally, classification of algae is based on - 1. Nuclear Organization 2. Nature of Cell Wall Components 3. Pigmentation and Photosynthetic Apparatus The pigment is one of the most important criteria used in differentiation of classes in algae. The pigments in algae can be chlorophylls, carotenoids and biloproteins. These pigments are present in sac like structures called thylakoids. The thylakoids are arranged in stacks in the granum of the chloroplasts. Different groups of algae have different types of pigments and organization of thylakoids in chloroplast. The chlorophylls in algae are chlorophyll a, b, c, d and e types. Chlorophyll a is present in all classes of algae. Chlorophyll b is primary pigment of Chlorophyceae and Euglenineae. Chlorophyll c is found in Phaeophyceae and Cryptophyceae. Chlorophyll d is found in Rhodophyceae. Chlorophyll e is confined to Tribonema of Xanthophyceae. Pigments are chemical compounds which reflect only certain wavelengths of visible light. This makes them appear colourful. More important than their reflection of light is the ability of pigments to absorb certain wavelengths. Since each pigment reacts with only a narrow range of the spectrum, it is important for algae to produce pigments of different colours to capture more of the sun's energy. -
Characterizing the Absorption Properties for Remote Sensing of Three Small Optically-Diverse South African Reservoirs
Remote Sens. 2013, 5, 4370-4404; doi:10.3390/rs5094370 OPEN ACCESS Remote Sensing ISSN 2072-4292 www.mdpi.com/journal/remotesensing Article Characterizing the Absorption Properties for Remote Sensing of Three Small Optically-Diverse South African Reservoirs Mark William Matthews 1;* and Stewart Bernard 1;2 1 Marine Remote Sensing Unit, Department of Oceanography, University of Cape Town, Rondebosch, 7701 Cape Town, South Africa 2 Earth Systems Earth Observation, Council for Scientific and Industrial Research, 15 Lower Hope Street, Rosebank, 7700 Cape Town, South Africa; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +27-216-505-775. Received: 16 July 2013; in revised form: 30 August 2013 / Accepted: 3 September 2013 / Published: 9 September 2013 Abstract: Characterizing the specific inherent optical properties (SIOPs) of water constituents is fundamental to remote sensing applications. Therefore, this paper presents the absorption properties of phytoplankton, gelbstoff and tripton for three small, optically-diverse South African inland waters. The three reservoirs, Hartbeespoort, Loskop and Theewaterskloof, are challenging for remote sensing, due to differences in phytoplankton assemblage and the considerable range of constituent concentrations. Relationships between the absorption properties and biogeophysical parameters, chlorophyll-a (chl-a), TChl (chl-a plus phaeopigments), seston, minerals and tripton, are established. The value determined for the mass-specific tripton absorption coefficient ∗ 2 −1 at 442 nm, atr(442), ranges from 0.024 to 0.263 m ·g . The value of the TChl-specific ∗ phytoplankton absorption coefficient (aφ) was strongly influenced by phytoplankton species, ∗ 2 −1 size, accessory pigmentation and biomass. -
Pigment Signatures of Phytoplankton Communities in the Beaufort Sea
Biogeosciences, 12, 991–1006, 2015 www.biogeosciences.net/12/991/2015/ doi:10.5194/bg-12-991-2015 © Author(s) 2015. CC Attribution 3.0 License. Pigment signatures of phytoplankton communities in the Beaufort Sea P. Coupel1, A. Matsuoka1, D. Ruiz-Pino2, M. Gosselin3, D. Marie4, J.-É. Tremblay1, and M. Babin1 1Joint International ULaval-CNRS Laboratory Takuvik, Québec-Océan, Département de Biologie, Université Laval, Québec, Québec G1V 0A6, Canada 2Laboratoire d’Océanographie et du Climat: Expérimentation et Approches Numériques (LOCEAN), UPMC, CNRS, UMR 7159, Paris, France 3Institut des sciences de la mer de Rimouski (ISMER), Université du Québec à Rimouski, 310 allée des Ursulines, Rimouski, Québec G5L 3A1, Canada 4Station Biologique, CNRS, UMR 7144, INSU et Université Pierre et Marie Curie, Place George Teissier, 29680 Roscoff, France Correspondence to: P. Coupel ([email protected]) Received: 11 August 2014 – Published in Biogeosciences Discuss.: 13 October 2014 Revised: 15 December 2014 – Accepted: 30 December 2014 – Published: 17 February 2015 Abstract. Phytoplankton are expected to respond to recent potentially leads to incorrect group assignments and some environmental changes of the Arctic Ocean. In terms of misinterpretation of CHEMTAX. Thanks to the high repro- bottom-up control, modifying the phytoplankton distribution ducibility of pigment analysis, our results can serve as a base- will ultimately affect the entire food web and carbon export. line to assess change and spatial or temporal variability in However, detecting and quantifying changes in phytoplank- several phytoplankton populations that are not affected by ton communities in the Arctic Ocean remains difficult be- these misinterpretations. cause of the lack of data and the inconsistent identification methods used. -
EBS 566/555 Lecture 14: Phytoplankton Functional
EBS 566/555 3/3/2010 Lecture 15 Blooms, primary production and types of phytoplankton (Ch 2, 3) Topics – Finish blooms – Major taxa of phytoplankton – How to measure phytoplankton – Primary production http://cmore.soest.hawaii.edu EBS566/666-Lecture 13 1 Alternatives to the Spring Bloom • Polar and tropical seas • Shallow water case: stratification not important for bloom initiation, only light is important • Estuaries (Cloern and Jassby 2008, 2009) • Extremely oligotrophic regions • Iron limitation (e.g. subarctic North Pacific) – But also applies to spring bloom! • Grazing regime • Upwelling systems (coastal, equatorial) EBS566/666-Lecture 13 2 Global comparison of phytoplankton biomass In South Pacific Gyre, chl a is highest in winter compared to summer Green = chl a Red = mixed layer depth (determined from Argo float) Claustre, unpubl. EBS566/666-Lecture 13 4 Annually averaged chl a HNLC HNLC HNLC EBS566/666-Lecture 13 5 Fate of bloom phytoplankton • Shallow decomposition ( microbial loop, regeneration) • Export – To deep ocean – Burial in sediments ( sedimentary record) • Grazing – Mesozooplankton – Microzooplankton – Excretion regenerated nutrients EBS566/666-Lecture 13 6 We can estimate algal biomass using the photosynthetic pigment, chlorophyll a micro.magnet.fsu.edu http://www.agen.ufl.edu hypnea.botany.uwc.ac.za left: Chloroplast of Chlamydomonas, a unicellular green alga. Note the chloroplast (Chl) with stacked thylakoids, and starch (s). TEM image by Richard Pienaar stroma grana lamellae/stroma thylakoids The ‘Z’ scheme Non-cyclic -
Photosynthetic Light-Harvesting (Antenna) Complexes—Structures and Functions
molecules Review Photosynthetic Light-Harvesting (Antenna) Complexes—Structures and Functions Heiko Lokstein 1,* , Gernot Renger 2,† and Jan P. Götze 3 1 Department of Chemical Physics and Optics, Charles University, Ke Karlovu 3, 12116 Prague, Czech Republic 2 Max-Volmer-Laboratorium, Technische Universität Berlin, Straße des 17. Juni 135, D-10623 Berlin, Germany 3 Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 22, D-14195 Berlin, Germany; [email protected] * Correspondence: [email protected] † Sadly, Professor Dr. Gernot Renger passed away on 12 January 2013. This article is dedicated to commemorate the outstanding contributions of Gernot Renger to oxygenic photosynthesis research. Abstract: Chlorophylls and bacteriochlorophylls, together with carotenoids, serve, noncovalently bound to specific apoproteins, as principal light-harvesting and energy-transforming pigments in photosynthetic organisms. In recent years, enormous progress has been achieved in the elucidation of structures and functions of light-harvesting (antenna) complexes, photosynthetic reaction centers and even entire photosystems. It is becoming increasingly clear that light-harvesting complexes not only serve to enlarge the absorption cross sections of the respective reaction centers but are vitally important in short- and long-term adaptation of the photosynthetic apparatus and regulation of the energy-transforming processes in response to external and internal conditions. Thus, the wide variety of structural diversity in photosynthetic antenna “designs” becomes conceivable. It is, however, common for LHCs to form trimeric (or multiples thereof) structures. We propose a simple, tentative explanation of the trimer issue, based on the 2D world created by photosynthetic membrane systems. Citation: Lokstein, H.; Renger, G.; Götze, J.P. -
Environmental Chemistry I Lab. 5. the Impact of Acid Precipitation On
Environmental Chemistry I Lab. 5. The impact of acid precipitation on vegetation EPM sem. PHOTOSYNTHETIC PIGMENTS Pigments are chemical compounds which reflect only certain wavelengths of visible light. This makes them appear colorful. Flowers, corals, and even animal skin contain pigments which give them their colors. More important than their reflection of light is the ability of pigments to absorb certain wavelengths. Because they interact with light to absorb only certain wavelengths, pigments are useful to plants and other autotrophs – organisms which make their own food using photosynthesis. In plants, algae, and cyanobacteria, pigments are the means by which the energy of sunlight is captured for photosynthesis. However, since each pigment reacts with only a narrow range of the spectrum, there is usually a need to produce several kinds of pigments, each of a different color, to capture more of the sun's energy. There are three basic classes of pigments: Chlorophylls are greenish pigments which contain a porphyrin ring. This is a stable ring- shaped molecule around which electrons are free to migrate. Because the electrons move freely, the ring has the potential to gain or lose electrons easily, and thus the potential to provide energized electrons to other molecules. This is the fundamental process by which chlorophyll "captures" the energy of sunlight. Carotenoids are usually red, orange, or yellow pigments, and include the familiar compound carotene, which gives carrots their color. These compounds are composed of two small six-carbon rings connected by a "chain" of carbon atoms. As a result, they do not dissolve in water, and must be attached to membranes within the cell. -
Dyes and Colorants from Algae
Dyes and Colorants from Algae List of Contents • Introduction • Common Algal Pigments o Phycoerythrin o Phycocyanin o Beta-carotene o Chlorophyll o Fucoxanthin • Role of Diatoms as Algal Pigments • Extraction of Algal Pigments • Application • Conclusion Introduction Dyes and Colorants from natural sources are gaining importance mainly due to health and environmental issues. Algae contain a wide range of photosynthetic pigments. Three major classes of photosynthetic pigments are chlorophylls, carotenoids (carotenes and xanthophylls) and phycobilins. Phycocyanin and phycoerythrin belong to the major class of phycobilins photosynthetic pigment while fucoxanthin and peridinin belong to carotenoid group of photosynthetic pigment. The table below elucidates the different types of algae and the major pigment they contain. Division Common Name Major Accessory Pigment Chlorophyta Green algae chlorophyll b Euglenophyta Euglenoids chlorophyll b Phaeophyta Brown algae Chlorophyll c1 + c2, fucoxanthin Chrysophyta Yellow-brown or golden- chlorophyll c1 + c2, brown algae fucoxanthin Pyrrhophyta Dinoflagellates chlorophyll c2, peridinin Cryptophyta Cryptomonads chlorophyll c2, phycobilins Rhodophyta Red algae phycoerythrin, phycocyanin Cyanophyta Blue-green algae phycocyanin, phycoerythrin Source : http://www.clarku.edu/faculty/robertson/Laboratory%20Methods/Pigments.html The advantages of using algae as the source of dyes and food colorants are 1. Nutritional Value : Most of the pigments have high nutritional value unlike their synthetic counterparts. 2. Eco-friendliness : The process of production of natural dyes from algae does not involve the usage of harmful and/or polluting chemicals. The majority of these effluents are biodegradable and can also be reused as fodder, bioplastics etc. 3. Non-Toxicity and Non-Carcinogenicity : Pigments derived from algae have been certified as safe for usage as food colorants. -
Chlorophyll Is Not Accurate Measurement for Algal Biomass Rameshprabu Ramaraj **[A], David D-W
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by National Chung Hsing University Institutional Repository Chiang Mai J. Sci. 2013; 40(X) 1 Chiang Mai J. Sci. 2013; 40(X) : 1-9 http://it.science.cmu.ac.th/ejournal/ Contributed Paper Chlorophyll is not accurate measurement for algal biomass Rameshprabu Ramaraj **[a], David D-W. Tsai [a] and Paris Honglay Chen *[a] [a] Department of Soil and Water Conservation, National Chung-Hsing University, 402 Taichung, Taiwan. *Author for correspondence; e-mail: [email protected], [email protected] Received: 1 August 2012 Accepted: 19 March 2013 ABSTRACT Microalgae are key primary producers and their biomass is widely applied for the production of pharmaceutics, bioactive compounds and energy. Conventionally, the content of algal chlorophyll is considered an index for algal biomass. However, this study, we estimated algal biomass by direct measurement of total suspended solids (TSS) and correlated it with chlorophyll content. The results showed mean chlorophyll-a equal to 1.05 mg/L; chlorophyll- b 0.51 mg/L and chlorophyll-a+b 1.56 mg/L. Algal biomass as 161 mg/L was measured by dry weight (TSS). In statistical t-tests, F-tests and all the tested growth models, such as linear, quadratic, cubic, power, compound, inverse, logarithmic, exponential, s-curve and logistic models, we did not find any discernible relationship between all chlorophyll indices and TSS biomass. Hence, the conventional method of chlorophyll measurement might not be a good index for biomass estimation. Keywords: Microalgae; Biomass; Chlorophyll; Total suspended solids; Eco-tech 1. -
Expanding the Solar Spectrum Used by Photosynthesis
Review Expanding the solar spectrum used by photosynthesis Min Chen1 and Robert E. Blankenship2 1 School of Biological Sciences, University of Sydney, Sydney, NSW 2006, Australia 2 Departments of Biology and Chemistry, Washington University in St. Louis, St. Louis, MO 63130, USA A limiting factor for photosynthetic organisms is their imately 700 nm, whereas the peak of the energy curve is at light-harvesting efficiency, that is the efficiency of their approximately 500 nm. The importance of the spectral conversion of light energy to chemical energy. Small region at longer wavelengths than 700 nm is made more modifications or variations of chlorophylls allow photo- apparent when the solar spectrum is represented as pho- synthetic organisms to harvest sunlight at different ton flux. Even small increases in the ability to utilize these wavelengths. Oxygenic photosynthetic organisms usu- photons can be significant because they occur at the place ally utilize only the visible portion of the solar spectrum. where the solar spectrum is at its maximum. The cyanobacterium Acaryochloris marina carries out Most oxygenic photosynthetic organisms are able to oxygenic photosynthesis but contains mostly chloro- utilize essentially the same region of the solar spectrum phyll d and only traces of chlorophyll a. Chlorophyll d that our eyes are sensitive to, namely the visible range provides a potential selective advantage because it extending from 400 nm to 700 nm [2]. This region is called enables Acaryochloris to use infrared light (700– photosynthetically active radiation (PAR). Using the 750 nm) that is not absorbed by chlorophyll a. Recently, ASTM 1.5 reference solar spectrum [1], the integrated an even more red-shifted chlorophyll termed chlorophyll 400–700 nm PAR photon flux is 1.05 Â 1021 photons mÀ2 f has been reported. -
Figures 1.1Bi, 1.1Bl, 1.1Bm, 1.1Bn, and 1.56)
1 Euglenozoa—Euglenophyceae Euglenophyceae include mostly unicellular flagellates, although colonial species are common (Figures 1.1bi, 1.1bl, 1.1bm, 1.1bn, and 1.56). They are widely distributed, occurring in freshwater, but also brackish and marine waters, most soils and mud. They are especially abundant in highly heterotrophic environments. The flagella arise from the bottom of a cavity called reservoir, located in the anterior end of the cell. Cells can also ooze their way through mud or sand by a process known as metaboly, a series of flowing movements made possible by the presence of the pellicle, a proteinaceous wall that lies inside the cytoplasm. The pellicle can have a spiral construction and can be ornamented. The members of this division share their pigmentation with prochlorophytes, green algae, and land plants, since they have chlorophylls a and b, β- and γ-carotenes, and xanthins. However, plastids could be colorless or absent in some species. As in the Dinophyceae, the chloroplast envelope consists of three membranes. Within the chloroplasts, the thylakoids are usually in groups of 3, without a girdle lamella; pyrenoids may be present. The chloroplast DNA occurs 1 2 as a fine skein of tiny granules. The photoreceptive system consisting of an orange eyespot located free in the cytoplasm and the true photoreceptor located at the base of the flagellum can be considered unique among unicellular algae. The reserve polysaccharide is paramylon, β-1,3-glucan stored in granules scattered inside the cytoplasm, and not in the chloroplasts such as the starch of the Chlorophyta. Though possessing chlorophylls, these algae are not photoautotrophic but rather obligate mixotrophic, because they require one or more vitamins of the B group.