Lahontan Redside Shiner (Richardsonius Egregius)
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Roundtail Chub (Gila Robusta Robusta): a Technical Conservation Assessment
Roundtail Chub (Gila robusta robusta): A Technical Conservation Assessment Prepared for the USDA Forest Service, Rocky Mountain Region, Species Conservation Project May 3, 2005 David E. Rees, Jonathan A. Ptacek, and William J. Miller Miller Ecological Consultants, Inc. 1113 Stoney Hill Drive, Suite A Fort Collins, Colorado 80525-1275 Peer Review Administered by American Fisheries Society Rees, D.E., J.A. Ptacek, and W.J. Miller. (2005, May 3). Roundtail Chub (Gila robusta robusta): a technical conservation assessment. [Online]. USDA Forest Service, Rocky Mountain Region. Available: http:// www.fs.fed.us/r2/projects/scp/assessments/roundtailchub.pdf [date of access]. ACKNOWLEDGMENTS We would like to thank those people who promoted, assisted, and supported this species assessment for the Region 2 USDA Forest Service. Ryan Carr and Kellie Richardson conducted preliminary literature reviews and were valuable in the determination of important or usable literature. Laura Hillger provided assistance with report preparation and dissemination. Numerous individuals from Region 2 national forests were willing to discuss the status and management of this species. Thanks go to Greg Eaglin (Medicine Bow National Forest), Dave Gerhardt (San Juan National Forest), Kathy Foster (Routt National Forest), Clay Spease and Chris James (Grand Mesa, Uncompahgre, and Gunnison National Forest), Christine Hirsch (White River National Forest), as well as Gary Patton and Joy Bartlett from the Regional Office. Dan Brauh, Lory Martin, Tom Nesler, Kevin Rogers, and Allen Zincush, all of the Colorado Division of Wildlife, provided information on species distribution, management, and current regulations. AUTHORS’ BIOGRAPHIES David E. Rees studied fishery biology, aquatic ecology, and ecotoxicology at Colorado State University where he received his B.S. -
Molecular Systematics of Western North American Cyprinids (Cypriniformes: Cyprinidae)
Zootaxa 3586: 281–303 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) urn:lsid:zoobank.org:pub:0EFA9728-D4BB-467E-A0E0-0DA89E7E30AD Molecular systematics of western North American cyprinids (Cypriniformes: Cyprinidae) SUSANA SCHÖNHUTH 1, DENNIS K. SHIOZAWA 2, THOMAS E. DOWLING 3 & RICHARD L. MAYDEN 1 1 Department of Biology, Saint Louis University, 3507 Laclede Avenue, St. Louis, MO 63103, USA. E-mail S.S: [email protected] ; E-mail RLM: [email protected] 2 Department of Biology and Curator of Fishes, Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602, USA. E-mail: [email protected] 3 School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA. E-mail: [email protected] Abstract The phylogenetic or evolutionary relationships of species of Cypriniformes, as well as their classification, is in a era of flux. For the first time ever, the Order, and constituent Families are being examined for relationships within a phylogenetic context. Relevant findings as to sister-group relationships are largely being inferred from analyses of both mitochondrial and nuclear DNA sequences. Like the vast majority of Cypriniformes, due to an overall lack of any phylogenetic investigation of these fishes since Hennig’s transformation of the discipline, changes in hypotheses of relationships and a natural classification of the species should not be of surprise to anyone. Basically, for most taxa no properly supported phylogenetic hypothesis has ever been done; and this includes relationships with reasonable taxon and character sampling of even families and subfamilies. -
Phylogenetic Relationships of Eurasian and American Cyprinids Using Cytochrome B Sequences
Journal of Fish Biology (2002) 61, 929–944 doi:10.1006/jfbi.2002.2105, available online at http://www.idealibrary.com on Phylogenetic relationships of Eurasian and American cyprinids using cytochrome b sequences C. C*, N. M*, T. E. D†, A. G‡ M. M. C*§ *Centro de Biologia Ambiental, Departamento de Zoologia e Antropologia, Faculdade de Cieˆncia de Lisboa, Campo Grande, Bloco C2, 3 Piso. 1749-016 Lisboa, Portugal, †Department of Biology, Arizona State University, Tempe, Arizona 85287-1501, U.S.A. and ‡Laboratoire d’Hydrobiology, Universite´ de Provence, 1 Place Victor Hugo, 1331 Marseille, France (Received 30 January 2002, Accepted 6 August 2002) Neighbour-joining and parsimony analyses identified five lineages of cyprinids: (1) European leuciscins (including Notemigonus)+North American phoxinins (including Phoxinus phoxinus); (2) European gobionins+Pseudorasbora; (3) primarily Asian groups [cultrins+acheilognathins+ gobionins (excluding Abbotina)+xenocyprinins]; (4) Abbottina+Sinocyclocheilus+Acrossocheilus; (5) cyprinins [excluding Sinocyclocheilus and Acrossocheilus]+barbins+labeonins. Relationships among these lineages and the enigmatic taxa Rhodeus were not well-resolved. Tests of mono- phyly of subfamilies and previously proposed relationships were examined by constraining cytochrome b sequences data to fit previous hypotheses. The analysis of constrained trees indicated that sequence data were not consistent with most previously proposed relationships. Inconsistency was largely attributable to Asian taxa, such as Xenocypris and Xenocyprioides. Improved understanding of historical and taxonomic relationships in Cyprinidae will require further morphological and molecular studies on Asian cyprinids and taxa representative of the diversity found in Africa. 2002 The Fisheries Society of the British Isles. Published by Elsevier Science Ltd. All rights reserved. Key words: Cyprinidae; molecular phylogeny; cytochrome b; monophyly of subfamilies. -
Lake Tahoe Region Aquatic Invasive Species Management Plan CALIFORNIA ‐ NEVADA
Lake Tahoe Region Aquatic Invasive Species Management Plan CALIFORNIA ‐ NEVADA DRAFT September 2009 Pending approval by the Aquatic Nuisance Species Task Force This Aquatic Invasive Species Management Plan is part of a multi-stakeholder collaborative effort to minimize the deleterious effects of nuisance and invasive aquatic species in the Lake Tahoe Region. This specific product is authorized pursuant to Section 108 of Division C of the Consolidated Appropriations Act of 2005, Public Law 108-447 and an interagency agreement between the U.S. Army Corps of Engineers and the California Tahoe Conservancy. This product was prepared by: Suggested citation: USACE. 2009. Lake Tahoe Region Aquatic Invasive Species Management Plan, California - Nevada. 84 pp + Appendices. Cover photo credits: Lake Tahoe shoreline, Toni Pennington (Tetra Tech, Inc.); curlyleaf pondweed, Steve Wells (PSU); Asian clams, Brant Allen (UCD); bullfrog (USGS), zebra mussels (USGS); bluegill and largemouth bass (USACE) ii i Table of Contents Acknowledgements................................................................................................................ iii Acronyms ............................................................................................................................... iv Glossary.................................................................................................................................. vi Executive Summary ........................................................................................................... -
A New Chub (Actinopterygii, Cypriniformes, Cyprinidae) from the Middle Miocene (Early Clarendonian) Aldrich Station Formation, Lyon County, Nevada
Paludicola 7(4):137-157 May 2010 © by the Rochester Institute of Vertebrate Paleontology A NEW CHUB (ACTINOPTERYGII, CYPRINIFORMES, CYPRINIDAE) FROM THE MIDDLE MIOCENE (EARLY CLARENDONIAN) ALDRICH STATION FORMATION, LYON COUNTY, NEVADA Thomas S. Kelly Research Associate, Vertebrate Paleontology Section, Natural History Museum of Los Angeles County 900 Exposition Boulevard, Los Angeles, California 90007 ABSTRACT A new chub, Lavinia lugaskii, is described from the middle Miocene (early Clarendonian) Aldrich Station Formation of Lyon County, Nevada. Lavinia lugaskii represents a basal member of the Lavinia-Hesperoleucus lineage, indicating that this lineage diverged from a common ancestor with Mylopharodon before 12.5 – 12.0 million years before present. This is the oldest recognized species of Lavinia and the first new chub species to be documented from the Miocene of Nevada in over 30 years. INTRODUCTION METHODS A sample of fish fossils is now known from Measurements of the skeletons and individual localities that occur in an outlier of the Aldrich Station bones were made to the nearest 0.1 mm with a vernier Formation, exposed just west of Mickey Canyon on the caliper. Measurements of the pharyngeal teeth were northwest flank of the Pine Groove Hills, Lyon made with an optical micrometer to the nearest 0.01 County, Nevada. All of the fish remains were mm. Estimated standard lengths for partial skeletons recovered from a single stratigraphic level represented were extrapolated using the mean ratios of the standard by a thin (~0.06 m) shale bed. This level can be traced length to landmark measurements (e.g., ratios of the SL laterally for about 0.5 km and yielded fossil fish to head length, pectoral fin origin to pelvic fin origin remains at several points along its exposure. -
Redacted for Privacy Abstract Approved Profes Sor)
AN ABSTRACT OT' THE THESIS OT' Paul Edward Reimers for the M. S. in Fisheries (Narne) (5@ ( Major) Date thesis is presented Title DISTRIBUTION OF FISHES IN TRIBUTARIES OT' THE LOWER COLUMBIA RIVER Redacted for Privacy Abstract approved profes sor) During 1963 and 1964 collections were made in tributaries of the lower Colurnbia River and literature was reviewed to cornpile a list of fishes frorn that area. Based on available sources and collections in this study, a total of. 28 farnilies and 77 species are known from the lower Colurnbia River. Most of the fishes are rnarine or have rnarine affinities. Freshwater fishes include eight farnilies and ?9 species, but only three farnilies and eight species are prirnary. In the Colurnbia River the peripheral farnily Cottidae reaches great developrnent in the absence of a rrrore extensive prirnary fauna. Seven of the 12 species of Cottus known frorn the basin occur in the lower tributaries and were found to be the rnost widespread species there. LocaI distribution of 25 selected species is discussed, and used to gain an understanding of the relationship of the fauna of the Co1urn- bia River with the fauna of the Puget Sound drainage and coastal strearns of Oregon and Washington. These 25 selected species in- cluded I7 species which are recorded frorn the lower Columbia Riv- €r, and eight other species which are possibly present there. A nurnber of species occur throughout the Colurnbia River basin and rnay have interchanged with other drainages at several points. The absence of several species frorn the Rrget Sound drainage was associated with their absence frorn tributaries of the lower Colurnbia River. -
Basin-Wide Native Non-Game Fish Assessment
Basin‐wide Native Non‐game Fish Assessment 2011 Annual Report Revised on February 21, 2013 USDA Forest Service, Lake Tahoe Basin Management Unit Written by Christopher Lemmers (Biological Science Technician) and Maura Santora (Aquatic Biologist) Reviewed by Sarah Muskopf (Acting Forest Aquatic Biologist) and Shana Gross (Forest Ecologist) Approved by Holly Eddinger (Biological Program Leader) Original Version: April 19, 2012 Revised Version: February 21, 2013 1 TABLE OF CONTENTS Summary ....................................................................................................................................................... 2 Introduction .................................................................................................................................................. 3 Methods ........................................................................................................................................................ 5 Results ........................................................................................................................................................... 7 Discussion ................................................................................................................................................... 11 Recommendations ...................................................................................................................................... 13 Works Cited ................................................................................................................................................ -
Inferring the Tree of Life of the Order Cypriniformes, the Earth's Most
Journal of Systematics and Evolution 46 (3): 424–438 (2008) doi: 10.3724/SP.J.1002.2008.08062 (formerly Acta Phytotaxonomica Sinica) http://www.plantsystematics.com Inferring the Tree of Life of the order Cypriniformes, the earth’s most diverse clade of freshwater fishes: Implications of varied taxon and character sampling 1Richard L. MAYDEN* 1Kevin L. TANG 1Robert M. WOOD 1Wei-Jen CHEN 1Mary K. AGNEW 1Kevin W. CONWAY 1Lei YANG 2Andrew M. SIMONS 3Henry L. BART 4Phillip M. HARRIS 5Junbing LI 5Xuzhen WANG 6Kenji SAITOH 5Shunping HE 5Huanzhang LIU 5Yiyu CHEN 7Mutsumi NISHIDA 8Masaki MIYA 1(Department of Biology, Saint Louis University, St. Louis, MO 63103, USA) 2(Department of Fisheries, Wildlife, and Conservation Biology, Bell Museum of Natural History, University of Minnesota, St. Paul, MN 55108, USA) 3(Department of Ecology and Evolutionary Biology, Tulane University, New Orleans, LA 70118, USA) 4(Department of Biological Sciences, The University of Alabama, Tuscaloosa, AL 35487, USA) 5(Laboratory of Fish Phylogenetics and Biogeography, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China) 6(Tohoku National Fisheries Research Institute, Fisheries Research Agency, Miyagi 985-0001, Japan) 7(Ocean Research Institute, University of Tokyo, Tokyo 164-8639, Japan) 8(Department of Zoology, Natural History Museum & Institute, Chiba 260-8682, Japan) Abstract The phylogenetic relationships of species are fundamental to any biological investigation, including all evolutionary studies. Accurate inferences of sister group relationships provide the researcher with an historical framework within which the attributes or geographic origin of species (or supraspecific groups) evolved. Taken out of this phylogenetic context, interpretations of evolutionary processes or origins, geographic distributions, or speciation rates and mechanisms, are subject to nothing less than a biological experiment without controls. -
Seasonal Distribution and Habitat Selection by the Redside Shiner, Richardsonius Balteatus, in a Small Oregon Stream
AN ABSTRACT OF THE THESIS OF Kenneth J. Rodnick for the degree of Master of Science in Department of Fisheries presented on March 11, 1983 Title: Seasonal distribution and habitat selection by the redside shiner, Richardsonius balteatus, in a small Oregon stream Redacted for Privacy Abstract approved: Hiram W. Li Seasonal habitat availability, utilization, and selection byyoung of the year (<25 mm) and adult (>25 mm) redside shiner, Richardsonius balteatus, were studied for 1 year in sections of Greasy Creek, Benton County, Oregon. Intensive stream mapping procedures and snorkling observations provided most of the quantitative measures for habitat availability and utilization respectively. A multivariate discriminant analysis and classification suggested spatial segregation of young of the year and adult redside shiners along gradients of water velocity and depth of the water column. Throughout the year, young redside shiners occupied shallower water than adults and utilized areas with lower mean water velocities. Associated with increased winter stream flows and lowered water temperatures (< 100 C), redside shiners were inactive and found in habitats offering the most cover and refuge from current. Overwintering areas populated by redside shiners included undercut banks, root wads, bank failures, fallen trees, and backwaters. During the transitional period between winter andsummer, adult redside shiners shifted from overwintering habitats to the fasterwater of the main channel. Activities related to spawning and aggressive defense of space accompanied this shift. Young redside shiners continued to utilize protected margins. A multivariate discriminant analysis and classification comparing available and utilized stream habitats provided indices ofhabitat selection. Both young of the year and adult redside shinerswere relatively selective in the stream habitats they utilized. -
Selected Publications Jezkova, T., J.R. Jaeger, V. Olah-Hemmings, K.B. Jones, R.A. Lara-Resendiz, D.G. Mulcahy, and B.R. Riddle
Selected Publications Jezkova, T., J.R. Jaeger, V. Olah-Hemmings, K.B. Jones, R.A. Lara-Resendiz, D.G. Mulcahy, and B.R. Riddle, in press. Range and niche shifts in response to past climate change in the desert horned lizard (Phrynosoma platyrhinos). Ecography. Jezkova, T., B.R. Riddle, D.C. Card, D.R. Schield, M.E. Eckstut, and T. Castoe. 2014. Genetic consequences of a post-glacial range expansion in two congeneric rodents (genus Dipodomys) depend on ecology and genetic marker choice. Molecular Ecology: online 14 Dec 2014 (DOI:10:1111/mec.13012). Blois, J.L., N.J. Gotelli, A.K. Behrensmeyer, T.J. Faith, K.S. Lyons, J.W. Williams, K.L. Amatangelo, A. Bercovici, A. Du, J.T. Eronen, G.R. Graves, N. Jud, C. Labandeira, C. Looy, B. McGill, D. Patterson, R. Potts, B. R. Riddle, R. Terry, A. Tóth, A. Villaseñor, S. Wing. 2014. A framework for evaluating the influence of climate, dispersal limitation, and biotic interactions using fossil pollen species associations across the late Quaternary. Ecography 37:1095-1108. Bryson, R.W., Jr., B.T. Smith, A.N. deOca, and B.R. Riddle. 2014. Conflicting gene histories confound phylogeographical inference in a widespread group of Nearctic treefrogs. Zoological Journal of the Linnean Society 172:103-116. Riddle, B.R., T. Jezkova, A. Hornsby, and M. Matocq. 2014. Assembly of the modern Great Basin mammal biota: emerging insights from the integration of molecular biogeography with the fossil record. Journal of Mammalogy 95:1107- 1127 [Invited: Special Feature]. Houston, D., D.K. Shiozawa, B.T. Smith, and B.R. -
Minnows and Molecules: Resolving the Broad and Fine-Scale Evolutionary Patterns of Cypriniformes
Minnows and molecules: resolving the broad and fine-scale evolutionary patterns of Cypriniformes by Carla Cristina Stout A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 7, 2017 Keywords: fish, phylogenomics, population genetics, Leuciscidae, sequence capture Approved by Jonathan W. Armbruster, Chair, Professor of Biological Sciences and Curator of Fishes Jason E. Bond, Professor and Department Chair of Biological Sciences Scott R. Santos, Professor of Biological Sciences Eric Peatman, Associate Professor of Fisheries, Aquaculture, and Aquatic Sciences Abstract Cypriniformes (minnows, carps, loaches, and suckers) is the largest group of freshwater fishes in the world. Despite much attention, previous attempts to elucidate relationships using molecular and morphological characters have been incongruent. The goal of this dissertation is to provide robust support for relationships at various taxonomic levels within Cypriniformes. For the entire order, an anchored hybrid enrichment approach was used to resolve relationships. This resulted in a phylogeny that is largely congruent with previous multilocus phylogenies, but has much stronger support. For members of Leuciscidae, the relationships established using anchored hybrid enrichment were used to estimate divergence times in an attempt to make inferences about their biogeographic history. The predominant lineage of the leuciscids in North America were determined to have entered North America through Beringia ~37 million years ago while the ancestor of the Golden Shiner (Notemigonus crysoleucas) entered ~20–6 million years ago, likely from Europe. Within Leuciscidae, the shiner clade represents genera with much historical taxonomic turbidity. Targeted sequence capture was used to establish relationships in order to inform taxonomic revisions for the clade. -
The Aquatic Conservation Strategy of the Northwest Forest Plan—A Review of the Relevant Science After 23 Years
Synthesis of Science to Inform Land Management Within the Northwest Forest Plan Area Volume 2 Thomas A. Spies, Peter A. Stine, Rebecca Gravenmier, Jonathan W. Long, and Matthew J. Reilly, Technical Coordinators U.S. Department of Agriculture Forest Service Pacific Northwest Research Station Portland, Oregon General Technical Report PNW-GTR-966 Vol. 2 June 2018 Synthesis of Science to Inform Land Management Within the Northwest Forest Plan Area Chapter 7: The Aquatic Conservation Strategy of the Northwest Forest Plan—A Review of the Relevant Science After 23 Years Gordon H. Reeves, Deanna H. Olson, Steven M. Wondzell, to develop a network of functioning watersheds that supports Peter A. Bisson, Sean Gordon, Stephanie A. Miller, populations of fish and other aquatic and riparian-dependent Jonathan W. Long, and Michael J. Furniss1 organisms across the NWFP area (USDA and USDI 1994a). The ACS is based on preserving and restoring key ecological Introduction processes, including the natural disturbance regimes (USDA The Aquatic Conservation Strategy (ACS) is a regional and USDI 1994a) that create and maintain habitat for native strategy applied to aquatic and riparian ecosystems across aquatic and riparian-dependent organisms, and it recognizes the area covered by the Northwest Forest Plan (NWFP, that periodic natural disturbances may be required to sustain or Plan), encompassing broad landscapes of public lands ecological productivity. As a result, the ACS does not expect administered by the U.S. Department of Agriculture Forest that all watersheds will be in favorable condition (highly Service and the U.S. Department of the Interior Bureau of productive for the same aquatic organisms) at any point in Land Management (BLM) (USDA and USDI 1994a).