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Mosquito Species Identification Using Convolutional Neural Networks With
www.nature.com/scientificreports OPEN Mosquito species identifcation using convolutional neural networks with a multitiered ensemble model for novel species detection Adam Goodwin1,2*, Sanket Padmanabhan1,2, Sanchit Hira2,3, Margaret Glancey1,2, Monet Slinowsky2, Rakhil Immidisetti2,3, Laura Scavo2, Jewell Brey2, Bala Murali Manoghar Sai Sudhakar1, Tristan Ford1,2, Collyn Heier2, Yvonne‑Marie Linton4,5,6, David B. Pecor4,5,6, Laura Caicedo‑Quiroga4,5,6 & Soumyadipta Acharya2* With over 3500 mosquito species described, accurate species identifcation of the few implicated in disease transmission is critical to mosquito borne disease mitigation. Yet this task is hindered by limited global taxonomic expertise and specimen damage consistent across common capture methods. Convolutional neural networks (CNNs) are promising with limited sets of species, but image database requirements restrict practical implementation. Using an image database of 2696 specimens from 67 mosquito species, we address the practical open‑set problem with a detection algorithm for novel species. Closed‑set classifcation of 16 known species achieved 97.04 ± 0.87% accuracy independently, and 89.07 ± 5.58% when cascaded with novelty detection. Closed‑set classifcation of 39 species produces a macro F1‑score of 86.07 ± 1.81%. This demonstrates an accurate, scalable, and practical computer vision solution to identify wild‑caught mosquitoes for implementation in biosurveillance and targeted vector control programs, without the need for extensive image database development for each new target region. Mosquitoes are one of the deadliest animals in the world, infecting between 250–500 million people every year with a wide range of fatal or debilitating diseases, including malaria, dengue, chikungunya, Zika and West Nile Virus1. -
Operations and Disease Surveillance
VECTOR CONTROL DISTRICT COUNTY OF SANTA CLARA MONTHLY REPORT MAY 2020 SAVE WATER. NOT MOSQUITOES. DON’T CREATE MOSQUITO HABITAT BY ACCIDENT. Over watering lawns and plants is a large contributor to mosquito breeding. Help fight the bite by: • Fixing leaky faucets and broken sprinklers. • Only apply as much waster as your plants and soil need. Visit SCCVector.org for more information. IN THIS ISSUE MANAGER'S MESSAGE 2 SERVICES AVAILABLE 3 OPERATIONS DATA 4 - 6 WEST NILE 7 - 8 SURVEILLANCE PUBLIC SURVICE 9 REQUESTS VECTOR CONTROL DISTRICT COUNTY OF SANTA CLARA CONSUMER & ENVIRONMENTAL PROTECTION AGENCY PAGE 2 | OPERATIONS AND SURVEILLANCE REPORT MESSAGE FROM THE MANAGER Warm weather is here and that means vectors such as ticks are more active. May was Lyme Disease Awareness Month, and the County of Santa Clara Vector Control District celebrated by participating and advertising the Centers for Disease Control and Prevention’s Lyme Disease Awareness Month Lunch and Learn Series. The weekly series offered interactive presentations on tick surveillance, tick collection, tick bite prevention, and other activities. The District reminds the public to practice preventative measures to avoid coming into contact with ticks. Use insect repellent approved by the Environmental Protection Agency, avoid areas with high grass, and check gear, pets, and children for ticks during and after being in tick habitat. Warm months also mean other vectors such as mosquitoes are more active as well. The District is hard at work monitoring for diseases, such as West Nile virus and Nayer Zahiri eliminating mosquito breeding in areas like marshes, neglected pools, curbs, catch basins, and ponds. -
Data-Driven Identification of Potential Zika Virus Vectors Michelle V Evans1,2*, Tad a Dallas1,3, Barbara a Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8
RESEARCH ARTICLE Data-driven identification of potential Zika virus vectors Michelle V Evans1,2*, Tad A Dallas1,3, Barbara A Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8 1Odum School of Ecology, University of Georgia, Athens, United States; 2Center for the Ecology of Infectious Diseases, University of Georgia, Athens, United States; 3Department of Environmental Science and Policy, University of California-Davis, Davis, United States; 4Cary Institute of Ecosystem Studies, Millbrook, United States; 5Department of Infectious Disease, University of Georgia, Athens, United States; 6Center for Tropical Emerging Global Diseases, University of Georgia, Athens, United States; 7Center for Vaccines and Immunology, University of Georgia, Athens, United States; 8River Basin Center, University of Georgia, Athens, United States Abstract Zika is an emerging virus whose rapid spread is of great public health concern. Knowledge about transmission remains incomplete, especially concerning potential transmission in geographic areas in which it has not yet been introduced. To identify unknown vectors of Zika, we developed a data-driven model linking vector species and the Zika virus via vector-virus trait combinations that confer a propensity toward associations in an ecological network connecting flaviviruses and their mosquito vectors. Our model predicts that thirty-five species may be able to transmit the virus, seven of which are found in the continental United States, including Culex quinquefasciatus and Cx. pipiens. We suggest that empirical studies prioritize these species to confirm predictions of vector competence, enabling the correct identification of populations at risk for transmission within the United States. *For correspondence: mvevans@ DOI: 10.7554/eLife.22053.001 uga.edu Competing interests: The authors declare that no competing interests exist. -
The Mosquitoes of Alaska
LIBRAR Y ■JRD FEBE- Î961 THE U. s. DtPÁ¡<,,>^iMl OF AGidCÜLl-yí MOSQUITOES OF ALASKA Agriculture Handbook No. 182 Agricultural Research Service UNITED STATES DEPARTMENT OF AGRICULTURE U < The purpose of this handbook is to present information on the biology, distribu- tion, identification, and control of the species of mosquitoes known to occur in Alaska. Much of this information has been published in short papers in various journals and is not readily available to those who need a comprehensive treatise on this subject ; some of the material has not been published before. The information l)r()UKlit together here will serve as a guide for individuals and communities that have an interest and responsibility in mosquito problems in Alaska. In addition, the military services will have considerable use for this publication at their various installations in Alaska. CuUseta alaskaensis, one of the large "snow mosquitoes" that overwinter as adults and emerge from hiber- nation while much of the winter snow is on the ground. In some localities this species is suJBBciently abundant to cause serious annoy- ance. THE MOSQUITOES OF ALASKA By C. M. GJULLIN, R. I. SAILER, ALAN STONE, and B. V. TRAVIS Agriculture Handbook No. 182 Agricultural Research Service UNITED STATES DEPARTMENT OF AGRICULTURE Washington, D.C. Issued January 1961 For «ale by the Superintendent of Document«. U.S. Government Printing Office Washington 25, D.C. - Price 45 cent» Contents Page Page History of mosquito abundance Biology—Continued and control 1 Oviposition 25 Mosquito literature 3 Hibernation 25 Economic losses 4 Surveys of the mosquito problem. 25 Mosquito-control organizations 5 Mosquito surveys 25 Life history 5 Engineering surveys 29 Eggs_". -
Western Mosquitofish Gambusia Affinis ILLINOIS RANGE
western mosquitofish Gambusia affinis Kingdom: Animalia FEATURES Phylum: Chordata The western mosquitofish male grows to about one Class: Osteichthyes inch in length, while the female attains a length of Order: Cyprinodontiformes about two inches. A dark, teardrop-shaped mark is present under each eye. Black spots can be seen on Family: Poeciliidae the dorsal and tail fins. The back is gray-green to ILLINOIS STATUS brown-yellow with a dark stripe from the head to the dorsal fin. The sides are silver or gray with a common, native yellow or blue sheen. Scales are present on the head, and scales on the body have dark edges, giving a cross-hatched effect. These fish tend to die in the summer that they become mature. BEHAVIORS The western mosquitofish may be found in the southern one-half of Illinois. This fish lives in areas of little current and plentiful vegetation in swamps, sloughs, backwaters, ponds, lakes and streams. The western mosquitofish reproduces three or four times during the summer. Fertilization is internal. After mating, sperm is stored in a pouch within the female and may be used to fertilize several broods. The eggs develop inside the female and hatch in three to four weeks. Young are born alive. A brood may contain very few or several hundred fish. Young develop rapidly and may reproduce in their first summer. The western mosquitofish swims near the ILLINOIS RANGE surface, alone or in small groups, eating plant and animal materials that includes insects, spiders, small crustaceans, snails and duckweeds. © Illinois Department of Natural Resources. 2020. -
Molecular and Morphometric Evidence for the Widespread Introduction Of
BioInvasions Records (2017) Volume 6, Issue 3: 281–289 Open Access DOI: https://doi.org/10.3391/bir.2017.6.3.14 © 2017 The Author(s). Journal compilation © 2017 REABIC Research Article Molecular and morphometric evidence for the widespread introduction of Western mosquitofish Gambusia affinis (Baird and Girard, 1853) into freshwaters of mainland China Jiancao Gao1, Xu Ouyang1, Bojian Chen1, Jonas Jourdan2 and Martin Plath1,* 1College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China 2Department of River Ecology and Conservation, Senckenberg Research Institute and Natural History Museum Frankfurt, Gelnhausen, Germany *Corresponding author E-mail: [email protected] Received: 6 March 2017 / Accepted: 9 July 2017 / Published online: 31 July 2017 Handling editor: Marion Y.L. Wong Abstract Two North American species of mosquitofish, the Western (Gambusia affinis Baird and Girard, 1853) and Eastern mosquitofish (G. holbrooki Girard, 1859), rank amongst the most invasive freshwater fishes worldwide. While the existing literature suggests that G. affinis was introduced to mainland China, empirical evidence supporting this assumption was limited, and the possibility remained that both species were introduced during campaigns attempting to reduce vectors of malaria and dengue fever. We used combined molecular information (based on phylogenetic analyses of sequence variation of the mitochondrial cytochrome b gene) and morphometric data (dorsal and anal fin ray counts) to confirm the presence -
Herpetofauna and Aquatic Macro-Invertebrate Use of the Kino Environmental Restoration Project (KERP)
Herpetofauna and Aquatic Macro-invertebrate Use of the Kino Environmental Restoration Project (KERP) Tucson, Pima County, Arizona Prepared for Pima County Regional Flood Control District Prepared by EPG, Inc. JANUARY 2007 - Plma County Regional FLOOD CONTROL DISTRICT MEMORANDUM Water Resources Regional Flood Control District DATE: January 5,2007 TO: Distribution FROM: Julia Fonseca SUBJECT: Kino Ecosystem Restoration Project Report The Ed Pastor Environmental Restoration ProjectiKino Ecosystem Restoration Project (KERP) is becoming an extraordinary urban wildlife resource. As such, the Pima County Regional Flood Control District (PCRFCD) contracted with the Environmental Planning Group (EPG) to gather observations of reptiles, amphibians, and aquatic insects at KERP. Water quality was also examined. The purpose of the work was to provide baseline data on current wildlife use of the KERP site, and to assess water quality for post-project aquatic wildlife conditions. I additionally requested sampling of macroinvertebrates at Agua Caliente Park and Sweetwater Wetlands in hopes that the differences in aquatic wildlife among the three sites might provide insights into the different habitats offered by KERF'. The results One of the most important wildlife benefits that KERP provides is aquatic habitat without predatory bullfrogs and non- native fish. Most other constructed ponds and wetlands in Tucson, such as the Sweetwater Wetlands and Agua Caliente pond, are fuIl of non-native predators which devastate native fish, amphibians and aquatic reptiles. The KERP Wetlands may provide an opportunity for reestablishing declining native herpetofauna. Provided that non- native fish, bullfrogs or crayfish are not introduced, KERP appears to provide adequate habitat for Sonoran Mud Turtles (Kinosternon sonoriense), Lowland Leopard Frogs (Rana yavapaiensis), and Mexican Gartersnakes (Tharnnophis eques) and Southwestern Woodhouse Toad (Bufo woodhousii australis). -
The Alameda County Mosquito Abatement District Control Program
THTHEE ALAMEDA CCOUNTYOUNTY MOSQMOSQUITO ABATEMENT DISTRICT CONTROL PROGRAM September 2011 Alameda County Mosquito Abatement District 23187 Connecticut Street Hayward, California 94545-1605 THE ALAMEDA COUNTY MOSQUITO ABATEMENT DISTRICT CONTROL PROGRAM Key Staff John Rusmisel - District Manager Bruce Kirkpatrick - Entomologist Erika Castillo - Environmental Specialist Patrick Turney - Field Supervisor Phone: 510-783-7744 Fax: 510-783-3903 email: [email protected] TABLE OF CONTENTS Mission and Vision Statement ......................................................................................................................................... 5 General Information about the District........................................................................................................................... 6 Location of the District ....................................................................................................................... 7 District Powers.................................................................................................................................... 7 The Value of an Organized Mosquito Control District ....................................................................... 8 District Goals and Services ................................................................................................................. 9 Service Calls ....................................................................................................................................... 10 District Finances ................................................................................................................................ -
The Declining Spadefoot Toad Pelobates Fuscus: Calling Site Choice and Conservation
The declining spadefoot toad Pelobates fuscus: calling site choice and conservation Nyström, Per; Birkedal, L; Dahlberg, C; Brönmark, Christer Published in: Ecography DOI: 10.1034/j.1600-0587.2002.250411.x 2002 Link to publication Citation for published version (APA): Nyström, P., Birkedal, L., Dahlberg, C., & Brönmark, C. (2002). The declining spadefoot toad Pelobates fuscus: calling site choice and conservation. Ecography, 25(4), 488-498. https://doi.org/10.1034/j.1600- 0587.2002.250411.x Total number of authors: 4 General rights Unless other specific re-use rights are stated the following general rights apply: Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal Read more about Creative commons licenses: https://creativecommons.org/licenses/ Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. LUND UNIVERSITY PO Box 117 221 00 Lund +46 46-222 00 00 Download date: 28. Sep. 2021 ECOGRAPHY 25: 488–498, 2002 The declining spadefoot toad Pelobates fuscus: calling site choice and conservation Per Nystro¨m, Linda Birkedal, Christina Dahlberg and Christer Bro¨nmark Nystro¨m, P., Birkedal, L., Dahlberg, C. -
THE MOSQUITOFISH Gambusia Affinis
THE MOSQUITOFISH Gambusia affinis Adult male (above) and adu lt female (below) Cambusill affinis affinis. Courtesy of Or. L ouis .4. Krumholz . UNITED STATES DEPARTMENT OF THE INTERIOR FISH AND WILDLIFE SERVICE BUREA U OF COMMERCIAL FISHERIES Fishery Leaflet 525 ( THE MOSQUITOFISH, Gambusia affinis By Lola T. Dees Branch of Reports Divi ion of Resource Development CONTENTS Page Int roduction. • . • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • 1 Range. • • • • • . • . • • . • • • • • • • • • • • • • • . • • • • • • • • • • • • • • • • • 1 Fo reign introductions. • • • • . • • . • . • • • • • • • • • • • • • • • • • • • • • • • 2 Habitat . • . • . • • • • • • . • . • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • 2 Li fe history. • • • • • • • • . • • • • • • • • • • • • • • • • • • • . • • • • • • • • • • • • 2 Description •••••••••••••••• •••.•••••••••••.••. 1 • • • 2 Food . • . • • • • • • • • • • • • • • • • • • . • • • • • • • • • • • • • • • • • • • 3 Reproduction . • • • • • • • • • • • • • • • • . • • • • • • • • • • • • • • • • • • • • 3 TIle young . • • • • • . • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • 3 Enemies . • • • • • • . • • • . • • • • • • • • • • • • • • • • • . • • • • • • • • • • • • • • 3 Cu lture. • • • • • • • • • • • • • • . • • • • • • • • • • • • • • • • • • • • • • • • • • • • • 3 Dealers . • . • • • • • • • • • • • • • • • • • • • • • • • . • • • • • • • • • • • • • • • • • 4 References . • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • -
Gambusia Affinis)
Pacific Northwest Aquatic Invasive Species Profile: Western mosquitofish (Gambusia affinis) Laura Johnson FISH 423 December 3, 2008 Figure 1. Western mosquitofish G. affinis (photo source: www.usgs.gov). Diagnostic information eleven short spines on ray 3 (Page and Burr 1991). Order: Cyprinodontiformes Until 1988, both the western mosquitofish (G. Family: Poeciliidae affinis) and eastern mosquitofish (G. holbrooki) Genus: Gambusia were classified as subspecies of G. affinis. The Species: affinis classification of each fish as a separate species is important since they are native to different Common names: Western mosquitofish, portions of the eastern United States (Wooten et mosquitofish al. 1988). G. affinis can be distinguished from G. holbrooki by having six dorsal rays instead of The western mosquitofish, Gambusia seven, and a lack of prominent teeth on affinis, is a small (maximum 6.5 cm) gray or gonopodial ray three (Page and Burr 1991). brown fish with a rounded tail and upturned mouth (Figures 1 and 2). It may have a large Life-history and basic ecology dusky to black teardrop marking beneath its eye (as in Figure 1), but this marking is sometimes Life cycle reduced (as in Figure 2). G. affinis has a dark G. affinis are ovoviviparous, meaning stripe along its back to the dorsal fin, yellow and that the young develop within eggs inside the blue iridescence on transparent silver-gray body mother’s body and are then born live and do not sides, and six dorsal rays. G. affinis can be receive additional nourishment from the mother further distinguished from other members of its (Wydoski and Whitney 2003). -
Habitat Restoration As a Means of Controlling Non-Native Fish in a Mojave Desert Oasis G
Habitat Restoration as a Means of Controlling Non-Native Fish in a Mojave Desert Oasis G. Gary Scoppettone,1,2 Peter H. Rissler,1 Chad Gourley,3 and Cynthia Martinez4 Abstract depth (TD) than non-native Sailfin molly (Poecilia lati- Non-native fish generally cause native fish decline, and pinna) and Mosquitofish (Gambusia affinis) in warm once non-natives are established, control or elimination is water stream habitat, and Ash Meadows speckled dace in- usually problematic. Because non-native fish colonization habited significantly faster water than non-natives in cool has been greatest in anthropogenically altered habitats, water stream habitat. Modification of the outflow of Kings restoring habitat similar to predisturbance conditions may Pool Spring from marsh to warm water stream, with offer a viable means of non-native fish control. In this MWCV, TD, and temperature favoring native fish, investigation we identified habitats favoring native over changed the fish composition from predominantly non- non-native fish in a Mojave Desert oasis (Ash Meadows) native Sailfin molly and Mosquitofish to predominantly and used this information to restore one of its major warm Ash Meadows pupfish. This result supports the hypoth- water spring systems (Kings Pool Spring). Prior to restora- esis that restoring spring systems to a semblance of pre- tion, native fishes predominated in warm water (25–32°C) disturbance conditions would promote recolonization stream and spring-pool habitat, whereas non-natives pre- of native fishes and deter non-native fish invasion and dominated in cool water (•23°C) spring-pool and marsh/ proliferation. slack water habitat. Native Amargosa pupfish (Cyprino- don nevadensis) and Ash Meadows speckled dace (Rhi- Key words: Ash Meadows, Cyprinodon nevadensis, habi- nichthys osculus nevadensis) inhabited significantly faster tat manipulation, Mojave Desert, non-native fish control, mean water column velocities (MWCV) and greater total Rhinichthys osculus nevadensis, thermo springs.