Hyperbaric Oxygen in the Treatment of Invasive Fungal Infections: a Single-Center Experience
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Estimated Burden of Fungal Infections in Oman
Journal of Fungi Article Estimated Burden of Fungal Infections in Oman Abdullah M. S. Al-Hatmi 1,2,3,* , Mohammed A. Al-Shuhoumi 4 and David W. Denning 5 1 Department of microbiology, Natural & Medical Sciences Research Center, University of Nizwa, Nizwa 616, Oman 2 Department of microbiology, Centre of Expertise in Mycology Radboudumc/CWZ, 6500 Nijmegen, The Netherlands 3 Foundation of Atlas of Clinical Fungi, 1214GP Hilversum, The Netherlands 4 Ibri Hospital, Ministry of Health, Ibri 115, Oman; [email protected] 5 Manchester Fungal Infection Group, Manchester Academic Health Science Centre, The University of Manchester, Manchester M13 9PL, UK; [email protected] * Correspondence: [email protected]; Tel.: +968-25446328; Fax: +968-25446612 Abstract: For many years, fungi have emerged as significant and frequent opportunistic pathogens and nosocomial infections in many different populations at risk. Fungal infections include disease that varies from superficial to disseminated infections which are often fatal. No fungal disease is reportable in Oman. Many cases are admitted with underlying pathology, and fungal infection is often not documented. The burden of fungal infections in Oman is still unknown. Using disease frequencies from heterogeneous and robust data sources, we provide an estimation of the incidence and prevalence of Oman’s fungal diseases. An estimated 79,520 people in Oman are affected by a serious fungal infection each year, 1.7% of the population, not including fungal skin infections, chronic fungal rhinosinusitis or otitis externa. These figures are dominated by vaginal candidiasis, followed by allergic respiratory disease (fungal asthma). An estimated 244 patients develop invasive aspergillosis and at least 230 candidemia annually (5.4 and 5.0 per 100,000). -
Candida Auris
microorganisms Review Candida auris: Epidemiology, Diagnosis, Pathogenesis, Antifungal Susceptibility, and Infection Control Measures to Combat the Spread of Infections in Healthcare Facilities Suhail Ahmad * and Wadha Alfouzan Department of Microbiology, Faculty of Medicine, Kuwait University, P.O. Box 24923, Safat 13110, Kuwait; [email protected] * Correspondence: [email protected]; Tel.: +965-2463-6503 Abstract: Candida auris, a recently recognized, often multidrug-resistant yeast, has become a sig- nificant fungal pathogen due to its ability to cause invasive infections and outbreaks in healthcare facilities which have been difficult to control and treat. The extraordinary abilities of C. auris to easily contaminate the environment around colonized patients and persist for long periods have recently re- sulted in major outbreaks in many countries. C. auris resists elimination by robust cleaning and other decontamination procedures, likely due to the formation of ‘dry’ biofilms. Susceptible hospitalized patients, particularly those with multiple comorbidities in intensive care settings, acquire C. auris rather easily from close contact with C. auris-infected patients, their environment, or the equipment used on colonized patients, often with fatal consequences. This review highlights the lessons learned from recent studies on the epidemiology, diagnosis, pathogenesis, susceptibility, and molecular basis of resistance to antifungal drugs and infection control measures to combat the spread of C. auris Citation: Ahmad, S.; Alfouzan, W. Candida auris: Epidemiology, infections in healthcare facilities. Particular emphasis is given to interventions aiming to prevent new Diagnosis, Pathogenesis, Antifungal infections in healthcare facilities, including the screening of susceptible patients for colonization; the Susceptibility, and Infection Control cleaning and decontamination of the environment, equipment, and colonized patients; and successful Measures to Combat the Spread of approaches to identify and treat infected patients, particularly during outbreaks. -
Candida Species Identification by NAA
Candida Species Identification by NAA Background Vulvovaginal candidiasis (VVC) occurs as a result of displacement of the normal vaginal flora by species of the fungal genus Candida, predominantly Candida albicans. The usual presentation is irritation, itching, burning with urination, and thick, whitish discharge.1 VVC accounts for about 17% to 39% of vaginitis1, and most women will be diagnosed with VVC at least once during their childbearing years.2 In simplistic terms, VVC can be classified into uncomplicated or complicated presentations. Uncomplicated VVC is characterized by infrequent symptomatic episodes, mild to moderate symptoms, or C albicans infection occurring in nonpregnant and immunocompetent women.1 Complicated VVC, in contrast, is typified by severe symptoms, frequent recurrence, infection with Candida species other than C albicans, and/or occurrence during pregnancy or in women with immunosuppression or other medical conditions.1 Diagnosis and Treatment of VVC Traditional diagnosis of VVC is accomplished by either: (i) direct microscopic visualization of yeast-like cells with or without pseudohyphae; or (ii) isolation of Candida species by culture from a vaginal sample.1 Direct microscopy sensitivity is about 50%1 and does not provide a species identification, while cultures can have long turnaround times. Today, nucleic acid amplification-based (NAA) tests (eg, PCR) for Candida species can provide high-quality diagnostic information with quicker turnaround times and can also enable investigation of common potential etiologies -
Fungi in Bronchiectasis: a Concise Review
International Journal of Molecular Sciences Review Fungi in Bronchiectasis: A Concise Review Luis Máiz 1, Rosa Nieto 1 ID , Rafael Cantón 2 ID , Elia Gómez G. de la Pedrosa 2 and Miguel Ángel Martinez-García 3,* ID 1 Servicio de Neumología, Unidad de Bronquiectasias y Fibrosis Quística, Hospital Universitario Ramón y Cajal, 28034 Madrid, Spain; [email protected] (L.M.); [email protected] (R.N.) 2 Servicio de Microbiología, Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS), 28034 Madrid, Spain; [email protected] (R.C.); [email protected] (E.G.G.d.l.P.) 3 Servicio de Neumología, Hospital Universitario y Politécnico la Fe, 46016 Valencia, Spain * Correspondence: [email protected]; Tel.: +34-60-986-5934 Received: 3 December 2017; Accepted: 31 December 2017; Published: 4 January 2018 Abstract: Although the spectrum of fungal pathology has been studied extensively in immunosuppressed patients, little is known about the epidemiology, risk factors, and management of fungal infections in chronic pulmonary diseases like bronchiectasis. In bronchiectasis patients, deteriorated mucociliary clearance—generally due to prior colonization by bacterial pathogens—and thick mucosity propitiate, the persistence of fungal spores in the respiratory tract. The most prevalent fungi in these patients are Candida albicans and Aspergillus fumigatus; these are almost always isolated with bacterial pathogens like Haemophillus influenzae and Pseudomonas aeruginosa, making very difficult to define their clinical significance. Analysis of the mycobiome enables us to detect a greater diversity of microorganisms than with conventional cultures. The results have shown a reduced fungal diversity in most chronic respiratory diseases, and that this finding correlates with poorer lung function. -
Mucormycosis of the Central Nervous System
Journal of Fungi Review Mucormycosis of the Central Nervous System 1 1,2, , 3, , Amanda Chikley , Ronen Ben-Ami * y and Dimitrios P Kontoyiannis * y 1 Infectious Diseases Unit, Tel Aviv Sourasky Medical Center, Tel Aviv 64239, Israel 2 Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 64239, Israel 3 Department of Infectious Diseases, The University of Texas, M.D. Anderson Cancer Center, Houston, TX 77030, USA * Correspondence: [email protected] (R.B.-A.); [email protected] (D.P.K.) These authors contribute equally to this paper. y Received: 6 June 2019; Accepted: 7 July 2019; Published: 8 July 2019 Abstract: Mucormycosis involves the central nervous system by direct extension from infected paranasal sinuses or hematogenous dissemination from the lungs. Incidence rates of this rare disease seem to be rising, with a shift from the rhino-orbital-cerebral syndrome typical of patients with diabetes mellitus and ketoacidosis, to disseminated disease in patients with hematological malignancies. We present our current understanding of the pathobiology, clinical features, and diagnostic and treatment strategies of cerebral mucormycosis. Despite advances in imaging and the availability of novel drugs, cerebral mucormycosis continues to be associated with high rates of death and disability. Emerging molecular diagnostics, advances in experimental systems and the establishment of large patient registries are key components of ongoing efforts to provide a timely diagnosis and effective treatment to patients with cerebral mucormycosis. Keywords: central nervous system; mucormycosis; Mucorales; zygomycosis 1. Introduction Mucormycosis is the second most frequent invasive mold disease after aspergillosis [1–3], with rising incidence reported in some countries [4–7]. -
Epidemiological Alert: COVID-19 Associated Mucormycosis
Epidemiological Alert: COVID-19 associated Mucormycosis 11 June 2021 Given the potential increase in cases of COVID-19 associated mucormycosis (CAM) in the Region of the Americas, the Pan American Health Organization / World Health Organization (PAHO/WHO) recommends that Member States prepare health services in order to minimize morbidity and mortality due to CAM. Introduction In recent months, an increase in reports of cases of Mucormycosis (previously called zygomycosis) is the term used to name invasive fungal infections (IFI) COVID-19 associated Mucormycosis (CAM) has caused by saprophytic environmental fungi, been observed mainly in people with underlying belonging to the subphylum Mucoromycotina, order diseases, such as diabetes mellitus (DM), diabetic Mucorales. Among the most frequent genera are ketoacidosis, or on steroids. In these patients, the Rhizopus and Mucor; and less frequently Lichtheimia, most frequent clinical manifestation is rhino-orbital Saksenaea, Rhizomucor, Apophysomyces, and Cunninghamela (Nucci M, Engelhardt M, Hamed K. mucormycosis, followed by rhino-orbital-cerebral Mucormycosis in South America: A review of 143 mucormycosis, which present as secondary reported cases. Mycoses. 2019 Sep;62(9):730-738. doi: infections and occur after SARS CoV-2 infection. 1,2 10.1111/myc.12958. Epub 2019 Jul 11. PMID: 31192488; PMCID: PMC6852100). Globally, the highest number of cases has been The infection is acquired by the implantation of the reported in India, where it is estimated that there spores of the fungus in the oral, nasal, and are more than 4,000 people with CAM.3 conjunctival mucosa, by inhalation, or by ingestion of contaminated food, since they quickly colonize foods rich in simple carbohydrates. -
Isolation of Mucorales from Biological Environment and Identification of Rhizopus Among the Isolates Using PCR- RFLP
Journal of Shahrekord University of Medical Sciences doi:10.34172/jsums.2019.17 2019;21(2):98-103 http://j.skums.ac.ir Original Article Isolation of Mucorales from biological environment and identification of Rhizopus among the isolates using PCR- RFLP Mahboobeh Madani1* ID , Mohammadali Zia2 ID 1Department of Microbiology, Falavarjan Branch, Islamic Azad University, Isfahan, Iran 2Department of Basic Science, (Khorasgan) Isfahan Branch, Islamic Azad University, Isfahan, Iran *Corresponding Author: Mahboobeh Madani, Tel: + 989134097629, Email: [email protected] Abstract Background and aims: Mucorales are fungi belonging to the category of Zygomycetes, found much in nature. Culture-based methods for clinical samples are often negative, difficult and time-consuming and mainly identify isolates to the genus level, and sometimes only as Mucorales. Therefore, applying fast and accurate diagnosis methods such as molecular approaches seems necessary. This study aims at isolating Mucorales for determination of Rhizopus genus between the isolates using molecular methods. Methods: In this descriptive observational study, a total of 500 samples were collected from air and different surfaces and inoculated on Sabouraud Dextrose Agar supplemented with chloramphenicol. Then, the fungi belonging to Mucorales were identified and their pure culture was provided. DNA extraction was done using extraction kit and the chloroform method. After amplification, the samples belonging to Mucorales were identified by observing 830 bp bands. For enzymatic digestion, enzyme BmgB1 was applied for identification of Rhizopus species by formation of 593 and 235 bp segments. Results: One hundred pure colonies belonging to Mucorales were identified using molecular methods and after enzymatic digestion, 21 isolates were determined as Rhizopus species. -
An Aggressive Case of Mucormycosis
Open Access Case Report DOI: 10.7759/cureus.9610 An Aggressive Case of Mucormycosis Donovan Tran 1 , Berndt Schmit 2 1. Diagnostic Radiology, University of Arizona College of Medicine - Tucson, Tucson, USA 2. Radiology, University of Arizona College of Medicine - Tucson, Tucson, USA Corresponding author: Donovan Tran, [email protected] Abstract Mucormycosis is an aggressive fungal disease that can occur in individuals with certain predisposing factors, such as diabetes mellitus and pharmacologic immunosuppression. An astounding aspect of this disease is the speed at which it can spread to surrounding structures once it begins to germinate inside the human body. This case involves a 24-year-old male patient who presented to the emergency room complaining of a headache after a dental procedure who developed fulminant rhinocerebral mucormycosis within days. The objective of this report is to shed light on how fast this disease spreads, discuss current management of rhinocerebral mucormycosis, and illustrate the subtle, but critical radiographic findings to raise clinical awareness for this life-threatening disease. Categories: Emergency Medicine, Radiology, Infectious Disease Keywords: rhinocerebral mucormycosis, mucormycosis, rhizopus, invasive fungal sinusitis, retroantral fat, isavuconazole Introduction We share our world with fungi. They are ubiquitous in nature; current estimates put the number of fungal species to be as high as 5.1 million [1]. As plentiful as they are, only hundreds of these species are pathogenic to humans, collectively killing more than 1.6 million people annually [2]. Common fungi that cause illness are Aspergillus species, Candida albicans, Cryptococcus neoformans, Blastomyces dermatitidis, and Rhizopus species. The term mucormycosis refers to any fungal infection caused by fungi belonging to the Mucorales order [3]. -
MM 0839 REV0 0918 Idweek 2018 Mucor Abstract Poster FINAL
Invasive Mucormycosis Management: Mucorales PCR Provides Important, Novel Diagnostic Information Kyle Wilgers,1 Joel Waddell,2 Aaron Tyler,1 J. Allyson Hays,2,3 Mark C. Wissel,1 Michelle L. Altrich,1 Steve Kleiboeker,1 Dwight E. Yin2,3 1 Viracor Eurofins Clinical Diagnostics, Lee’s Summit, MO 2 Children’s Mercy, Kansas City, MO 3 University of Missouri-Kansas City School of Medicine, Kansas City, MO INTRODUCTION RESULTS Early diagnosis and treatment of invasive mucormycosis (IM) affects patient MUC PCR results of BAL submitted for Aspergillus testing. The proportions of Case study of IM confirmed by MUC PCR. A 12 year-old boy with multiply relapsed pre- outcomes. In immunocompromised patients, timely diagnosis and initiation of appropriate samples positive for Mucorales and Aspergillus in BAL specimens submitted for IA testing B cell acute lymphoblastic leukemia, despite extensive chemotherapy, two allogeneic antifungal therapy are critical to improving survival and reducing morbidity (Chamilos et al., are compared in Table 2. Out of 869 cases, 12 (1.4%) had POS MUC PCR, of which only hematopoietic stem cell transplants, and CAR T-cell therapy, presented with febrile 2008; Kontoyiannis et al., 2014; Walsh et al., 2012). two had been ordered for MUC PCR. Aspergillus was positive in 56/869 (6.4%) of neutropenia (0 cells/mm3), cough, and right shoulder pain while on fluconazole patients, with 5/869 (0.6%) positive for Aspergillus fumigatus and 50/869 (5.8%) positive prophylaxis. Chest CT revealed a right lung cavity, which ultimately became 5.6 x 6.2 x 5.9 Differentiating diagnosis between IM and invasive aspergillosis (IA) affects patient for Aspergillus terreus. -
Mucormycosis: a Review on Environmental Fungal Spores and Seasonal Variation of Human Disease
Advances in Infectious Diseases, 2012, 2, 76-81 http://dx.doi.org/10.4236/aid.2012.23012 Published Online September 2012 (http://www.SciRP.org/journal/aid) Mucormycosis: A Review on Environmental Fungal Spores and Seasonal Variation of Human Disease Rima I. El-Herte, Tania A. Baban, Souha S. Kanj* Division of Infectious Diseases, Department of Internal Medicine, American University of Beirut Medical Center, Beirut, Lebanon. Email: *[email protected] Received May 1st, 2012; revised June 3rd, 2012; accepted July 5th, 2012 ABSTRACT Mucormycosis is on the rise especially among patients with immunosuppressive conditions. There seems to be more cases seen at the end of summer and towards early autumn. Several studies have attempted to look at the seasonal varia- tions of fungal pathogens in variou indoor and outdoor settings. Only two reports, both from the Middle East, have ad- dressed the relationship of mucormycosis in human disease with climate conditions. In this paper we review, the rela- tionship of indoor and outdoor fungal particulates to the weather conditions and the reported seasonal variation of hu- man cases. Keywords: Mucormycosis; Seasonal Variation; Fungal Air Particulate Concentration; Mucor; Rhizopus; Rhinocerebral 1. Introduction bread, decaying fruits, vegetable matters, crop debris, soil, compost piles, animal excreta, and on excavation and con- Mucormycosis refers to infections caused by molds be- struction sites. Sporangiospores are easily aerosolized, and longing to the order of Mucorales. Members of the fam- are readily dispersed throughout the environment making ily Mucoraceae are the most common cause of mucor- inhalation the major mode of transmission. Published data mycosis in humans. -
Investigating the Impact of Polymicrobial Interactions on Mucorales Pathogenicity,” Submitted to the University of Birmingham in July 2019
INVESTIGATING THE IMPACT OF POLYMICROBIAL INTERACTIONS ON MUCORALES PATHOGENICITY by Courtney Alice Kousser A thesis submitted to the University of Birmingham for the degree of DOCTOR OF PHILOSOPHY Institute of Microbiology and Infection School of Biosciences College of Life and Environmental Sciences University of Birmingham July 2019 University of Birmingham Research Archive e-theses repository This unpublished thesis/dissertation is copyright of the author and/or third parties. The intellectual property rights of the author or third parties in respect of this work are as defined by The Copyright Designs and Patents Act 1988 or as modified by any successor legislation. Any use made of information contained in this thesis/dissertation must be in accordance with that legislation and must be properly acknowledged. Further distribution or reproduction in any format is prohibited without the permission of the copyright holder. Abstract Within the human body, microorganisms reside as part of a complex and varied ecosystem, where they rarely exist in isolation. Bacteria and fungi have co- evolved to develop elaborate and intricate relationships, utilising both physical and chemical communication mechanisms. Mucorales are filamentous fungi that are the causative agents of mucormycosis in immunocompromised individuals. Key to the pathogenesis is the ability to germinate and penetrate the surrounding tissues, leading to angioinvasion, vessel thrombosis, and tissue necrosis. It is currently unknown whether Mucorales participate in polymicrobial relationships, and if so, how this affects the pathogenesis. This project analyses the relationship between Mucorales and the microorganisms they may encounter. Here we show that Pseudomonas aeruginosa culture supernatants and live bacteria inhibit Rhizopus microsporus germination through the sequestration of iron. -
Clinical Features of Pulmonary Mucormycosis in Patients with Different Immune Status
5052 Original Article Clinical features of pulmonary mucormycosis in patients with different immune status Min Peng1#, Hua Meng2#, Yinghao Sun3, Yu Xiao4, Hong Zhang1, Ke Lv2, Baiqiang Cai1 1Division of Pulmonary and Critical Care Medicine, 2Department of Ultrasound, 3Department of Internal Medicine, 4Department of Pathology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100730, China Contributions: (I) Conception and design: M Peng, H Zhang, K Lv; (II) Administrative support: None; (III) Provision of study materials or patients: M Peng, Y Xiao, H Zhang; (IV) Collection and assembly of data: H Meng; Y Sun; (V) Data analysis and interpretation: M Peng, H Zhang; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors. #These authors contributed equally to this work. Correspondence to: Dr. Hong Zhang; Dr. Ke lv. No.1 Shuaifuyuan, Dongcheng District, Beijing 100730, China. Email: [email protected]; [email protected]. Background: Pulmonary mucormycosis (PM) is a relatively rare but often fatal and rapidly progressive disease. Most studies of PM are case reports or case series with limited numbers of patients, and focus on immunocompromised patients. We investigated the clinical manifestations, imaging features, treatment, and outcomes of patients with PM with a focus on the difference in clinical manifestations between patients with different immune status. Methods: Clinical records, laboratory results, and computed tomography scans of 24 patients with proven or probable PM from January 2005 to December 2018 in Peking Union Medical College Hospital were retrospectively analyzed. Results: Ten female and 14 male patients were included (median age, 43.5 years; range, 13–64 years).