Cytotoxic Epipolythiodioxopiperazine Alkaloids from Filamentous Fungi Of
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Taxonomy and Phylogeny of Gliocladium Analysed from Nuclear Large Subunit Ribosomal DNA Sequences
Mycol. Res. 98 (6):625-634 (1994) Printed in Great Britain 625 Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences STEPHEN A. REHNER AND GARY J. SAMUELS USDA, ARS, Systematic Botany and Mycology Laboratory Room 304, Building OIIA, Beltsville, BARC-W, Maryland 20705, U.SA. The phylogenetic distribution of Gliocladium within the Hypocreales was investigated by parsimony analysis of partial sequences from the nuclear large subunit ribosomal DNA (28s rDNA). Two principal monophyletic groups were resolved that included species with anarnorphs classified in Gliocladium. The first clade includes elements of the genera Hypocrea (H. gelatinosa, H. lutea) plus Trichodema, Hypocrea pallida, Hypomyces and Sphaerostilbella, which are each shown to be monophyletic but whose sister group relationships are unresolved with the present data set. Gliocladium anamorphs in this clade include Gliocladium penicillioides, the type species of Gliocladium and anamorph of Sphaerostilbella aureonitens, and Trichodema virens (= G. virens) which is a member of the clade containing Hypocrea and Trichodema. A second clade, consisting of species with pallid perithecia, is grouped around Nectria ochroleuca, whose anamorph is Gliocladium roseum. Other species in this clade having Gliocladium-like anamorphs are Nectriopsis sporangiicola and Roumeguericlla rufula. The species of Nectria represented in this study are polyphyletic and resolved as four separate groups: (1)N. cinnabarina the type species, (2) three species with Fusarium anamorphs including N. albosuccinea, N. haematococca and Gibberella fujikoroi, (3) N. purtonii a species whose anamorph is classified in Fwarium sect. Eupionnofes, and (4) N. ochroleuca, which is representative of species with pallid perithecia. The results indicate that Gliocladium is polyphyletic and that G. -
Biodiversity of Trichoderma in Neotropics
13 Biodiversity of Trichoderma in Neotropics Lilliana Hoyos-Carvajal1 and John Bissett2 1Universidad Nacional de Colombia, Sede Bogotá 2Agriculture and Agri-Food Canada, Eastern Cereal and Oilseed Research Centre, Ottawa 1Colombia 2Canada 1. Introduction Trichoderma species frequently are predominant over wide geographic regions in all climatic zones, where they are significant decomposers of woody and herbaceous materials. They are characterized by rapid growth, an ability to assimilate a diverse array of substrates, and by their production of an range of antimicrobials. Strains have been exploited for production of enzymes and antibiotics, bioremediation of xenobiotic substances, and as biological control agents against plant pathogenic fungi and nematodes. The main use of Trichoderma in global trade is derived from its high production of enzymes. Trichoderma reesei (teleomorph: Hypocrea jecorina) is the most widely employed cellulolytic organism in the world, although high levels of cellulase production are also seen in other species of this genus (Baig et al., 2003, Watanabe et al., 2006). Worldwide sales of enzymes had reached the figure of $ 1.6 billion by the year 2000 (Demain 2000, cited by Karmakar and Ray, 2011), with an annual growth of 6.5 to 10% not including pharmaceutical enzymes (Stagehands, 2008). Of these, cellulases comprise approximately 20% of the enzymes marketed worldwide (Tramoy et al., 2009). Cellulases of microbial origin are used to process food and animal feed, biofuel production, baking, textiles, detergents, paper pulp, agriculture and research areas at all levels (Karmakar and Ray, 2011). Most cellulases are derived from Trichoderma (section Longibrachiatum in particular) and Aspergillus (Begum et al., 2009). -
Two New Species and a New Chinese Record of Hypocreaceae As Evidenced by Morphological and Molecular Data
MYCOBIOLOGY 2019, VOL. 47, NO. 3, 280–291 https://doi.org/10.1080/12298093.2019.1641062 RESEARCH ARTICLE Two New Species and a New Chinese Record of Hypocreaceae as Evidenced by Morphological and Molecular Data Zhao Qing Zeng and Wen Ying Zhuang State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, P.R. China ABSTRACT ARTICLE HISTORY To explore species diversity of Hypocreaceae, collections from Guangdong, Hubei, and Tibet Received 13 February 2019 of China were examined and two new species and a new Chinese record were discovered. Revised 27 June 2019 Morphological characteristics and DNA sequence analyses of the ITS, LSU, EF-1a, and RPB2 Accepted 4 July 2019 regions support their placements in Hypocreaceae and the establishments of the new spe- Hypomyces hubeiensis Agaricus KEYWORDS cies. sp. nov. is characterized by occurrence on fruitbody of Hypomyces hubeiensis; sp., concentric rings formed on MEA medium, verticillium-like conidiophores, subulate phia- morphology; phylogeny; lides, rod-shaped to narrowly ellipsoidal conidia, and absence of chlamydospores. Trichoderma subiculoides Trichoderma subiculoides sp. nov. is distinguished by effuse to confluent rudimentary stro- mata lacking of a well-developed flank and not changing color in KOH, subcylindrical asci containing eight ascospores that disarticulate into 16 dimorphic part-ascospores, verticillium- like conidiophores, subcylindrical phialides, and subellipsoidal to rod-shaped conidia. Morphological distinctions between the new species and their close relatives are discussed. Hypomyces orthosporus is found for the first time from China. 1. Introduction Members of the genus are mainly distributed in temperate and tropical regions and economically The family Hypocreaceae typified by Hypocrea Fr. -
(Hypocreales) Proposed for Acceptance Or Rejection
IMA FUNGUS · VOLUME 4 · no 1: 41–51 doi:10.5598/imafungus.2013.04.01.05 Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) ARTICLE proposed for acceptance or rejection Amy Y. Rossman1, Keith A. Seifert2, Gary J. Samuels3, Andrew M. Minnis4, Hans-Josef Schroers5, Lorenzo Lombard6, Pedro W. Crous6, Kadri Põldmaa7, Paul F. Cannon8, Richard C. Summerbell9, David M. Geiser10, Wen-ying Zhuang11, Yuuri Hirooka12, Cesar Herrera13, Catalina Salgado-Salazar13, and Priscila Chaverri13 1Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA; corresponding author e-mail: Amy.Rossman@ ars.usda.gov 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada 3321 Hedgehog Mt. Rd., Deering, NH 03244, USA 4Center for Forest Mycology Research, Northern Research Station, USDA-U.S. Forest Service, One Gifford Pincheot Dr., Madison, WI 53726, USA 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia 6CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 7Institute of Ecology and Earth Sciences and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia 8Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 9Sporometrics, Inc., 219 Dufferin Street, Suite 20C, Toronto, Ontario, Canada M6K 1Y9 10Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, The Pennsylvania State University, University Park, PA 16802 USA 11State -
AR TICLE Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae
IMA FUNGUS · VOLUME 4 · NO 1: 41–51 doi:10.5598/imafungus.2013.04.01.05 Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) ARTICLE proposed for acceptance or rejection Amy Y. Rossman1, Keith A. Seifert2, Gary J. Samuels3, Andrew M. Minnis4, Hans-Josef Schroers5, Lorenzo Lombard6, Pedro W. Crous6, Kadri Põldmaa7, Paul F. Cannon8, Richard C. Summerbell9, David M. Geiser10, Wen-ying Zhuang11, Yuuri Hirooka12, Cesar Herrera13, Catalina Salgado-Salazar13, and Priscila Chaverri13 1Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA; corresponding author e-mail: Amy.Rossman@ ars.usda.gov 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada 3321 Hedgehog Mt. Rd., Deering, NH 03244, USA 4Center for Forest Mycology Research, Northern Research Station, USDA-U.S. Forest Service, One Gifford Pincheot Dr., Madison, WI 53726, USA 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia 6CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 7Institute of Ecology and Earth Sciences and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia 8Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 9Sporometrics, Inc., 219 Dufferin Street, Suite 20C, Toronto, Ontario, Canada M6K 1Y9 10Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, The Pennsylvania State University, University Park, PA 16802 USA 11State -
An Overview of the Taxonomy, Phylogeny, and Typification of Nectriaceous Fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella
available online at www.studiesinmycology.org StudieS in Mycology 68: 79–113. 2011. doi:10.3114/sim.2011.68.04 An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella T. Gräfenhan1, 4*, H.-J. Schroers2, H.I. Nirenberg3 and K.A. Seifert1 1Eastern Cereal and Oilseed Research Centre, Biodiversity (Mycology and Botany), 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada; 2Agricultural Institute of Slovenia, 1000 Ljubljana, Slovenia; 3Julius-Kühn-Institute, Institute for Epidemiology and Pathogen Diagnostics, Königin-Luise-Str. 19, D-14195 Berlin, Germany; 4Current address: Grain Research Laboratory, Canadian Grain Commission, 1404-303 Main Street, Winnipeg, Manitoba, R3C 3G8, Canada *Correspondence: [email protected] Abstract: A comprehensive phylogenetic reassessment of the ascomycete genus Cosmospora (Hypocreales, Nectriaceae) is undertaken using fresh isolates and historical strains, sequences of two protein encoding genes, the second largest subunit of RNA polymerase II (rpb2), and a new phylogenetic marker, the larger subunit of ATP citrate lyase (acl1). The result is an extensive revision of taxonomic concepts, typification, and nomenclatural details of many anamorph- and teleomorph-typified genera of theNectriaceae, most notably Cosmospora and Fusarium. The combined phylogenetic analysis shows that the present concept of Fusarium is not monophyletic and that the genus divides into two large groups, one basal in the family, the other terminal, separated by a large group of species classified in genera such as Calonectria, Neonectria, and Volutella. All accepted genera received high statistical support in the phylogenetic analyses. Preliminary polythetic morphological descriptions are presented for each genus, providing details of perithecia, micro- and/or macro-conidial synanamorphs, cultural characters, and ecological traits. -
Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): Species with Green Ascospores
CHAVERRI & SAMUELS Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): species with green ascospores Priscila Chaverri1* and Gary J. Samuels2 1The Pennsylvania State University, Department of Plant Pathology, Buckhout Laboratory, University Park, Pennsylvania 16802, U.S.A. and 2United States Department of Agriculture, Agricultural Research Service, Systematic Botany and My- cology Laboratory, Rm. 304, B-011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705, U.S.A. Abstract: The systematics of species of Hypocrea with green ascospores and their Trichoderma anamorphs is presented. Multiple phenotypic characters were analysed, including teleomorph and anamorph, as well as col- ony morphology and growth rates at various temperatures. In addition, phylogenetic analyses of two genes, the RNA polymerase II subunit (RPB2) and translation elongation factor 1-alpha (EF-1α), were performed. These analyses revealed that species of Hypocrea with green ascospores and Trichoderma anamorphs are derived from within Hypocrea but do not form a monophyletic group. Therefore, Creopus and Chromocrea, genera formerly segregated from Hypocrea only based on their coloured ascospores, are considered synonyms of Hy- pocrea. The present study showed that phenotypic characters alone are generally not helpful in understanding phylogenetic relationships in this group of organisms, because teleomorph characters are generally highly con- served and anamorph characters tend to be morphologically divergent within monophyletic lineages or clades. The species concept used here for Hypocrea/Trichoderma is based on a combination of phenotypic and geno- typic characteristics. In this study 40 species of Hypocrea/Trichoderma having green ascospores are described and illustrated. Dichotomous keys to the species are given. The following species are treated (names in bold are new species or new combinations): H. -
Figs. 464–483. Stromata of Hypocrea Species. 464. H. Albocornea (Isotype)
CHAVERRI &SAMUELS Figs. 464–483. Stromata of Hypocrea species. 464. H. albocornea (Isotype). 465. H. atrogelatinosa (Holotype). 466. H. aureoviridis (CBS 103.69). 467. H. candida (Holotype). 468. H. catoptron (G.J.S. 02-76). 469. H. centristerilis (Isotype). 470. H. ceracea (Holotype). 471. H. ceramica (G.J.S. 88-70). 472. H. chlorospora (G.J.S. 91-150). 473. H. chromosperma (Epitype). 474. H. cinnamomea (Holotype). 475. H. clusiae (Holotype). 476. H. cornea (Holotype). 477. H. costaricensis (Holotype). 478. H. crassa (G.J.S. 01-227). 479. H. cremea (Holotype). 480. H. cuneispora (Holotype). 481. H. estonica (Holotype). 482. H. gelatinosa (Epitype). 483. H. gyrosa (Holotype). Bars = ca. 1 mm. 471, 479–481. Adapted from Chaverri et al. (2003a) with permission from Mycologia. 103 HYPOCREA/TRICHODERMA WITH GREEN ASCOSPORES Excluded or doubtful species reported to have 5. Hypocrea pseudogelatinosa Komatsu & Yoshim. green ascospores Doi, Rept. Tottori Mycol. Inst. (Japan) 10: 425 (1973). 1. Hypocrea andinogelatinosa Yoshim. Doi, Bull. Natl. Sci. Mus., Ser. B (Bot.) 1: 20 (1975). Hypocrea pseudogelatinosa was reported as having yellow or yellow-brown stromata and green Holotype and paratype specimens of this species ascospores; distal part-ascospores subglobose or deposited in TNS were not available for examination. obovate, 3.8–4.7 × 3.7–4.0 μm; proximal part- Doi (1975) distinguished H. andinogelatinosa as ascospore 3.9–4.8 × 2.8–3.6 μm. Conidiophores having a small brownish stroma with prominent verticillium- to gliocladium-like; phialides 8–18 × 2– perithecial protuberances. The distal part-ascospores 3 μm; conidia green, ellipsoidal 2.5–5.0 × 2.1–3.2 were described as subglobose-obovate, 4.5–6.7 × μm; abundant production of chlamydospores (Doi 4.2–5.7 μm; and the proximal part-ascospores as 1973a). -
Some Aspects of the Chemistry and Biology of the Genus Hypocrea and Its Anamorphs, Trichoderma and Gliocladium
PROC. N.S. INST. SCI (1986) Volume 36, pp. 27-S8 SOME ASPECTS OF THE CHEMISTRY AND BIOLOGY OF THE GENUS HYPOCREA AND ITS ANAMORPHS, TRICHODERMA AND GLIOCLADIUM A. TAYLOR National Research Council of Canada Atlantic Research Laboratory Halifax, N.S. BJH 3Z1 The literature describing the occurrence, some aspects of the physiology and toxicology of the metabolic products of Hypocrea, Glioc/adium and Trichoderma spp. is reviewed. A list of known metabolites of this group of fungi has been assembled and the common physical propenies of these compounds are given when they have been reported. Such data as have been published on the toxicity of these metabolites is summarised, with particular emphasis on suitable review articles. An attempt is made to provide a comprehensive list of agents, known as potential inhibitors of the growth of these fungi. La litu!rature decriva nt quelques aspects de Ia physiologie et de Ia toxicologie des metabolites d'Hypocrea, Gliocladium et Trichoderma spp. est passee en revue. Une liste des metabolites conn us de ce groupe de moisissures est dressee et les proprietes physiques courantes sont donnees si connues. les informations publiees concernant Ia toxicite de ces metabolites sont resumees avec reference aux articles de revue appropriees. l 'auteur tente de donner une liste comprehensive des agents potentiellement inhibiteurs de Ia croissance de ces moisissures. Introd uctl on The taxonomy of the three genera, Hypocrea, Clioc/adium, and Trichoderma is in some respects confused. Authoritative studies of these taxonomic problems may be found in Cams (1971), Webster and lomas (1964) and Rifai (1969), but there are many examples in the literature that report difficult classification problems (e.g. -
Biological Control by Nematophagous Fungi for Plant-Parasitic Nematodes in Soils
ISSN 0367-6315 Korean J. Soil Sci. Fert. 45(1), 74-78 (2012) Article Biological Control by Nematophagous Fungi for Plant-parasitic Nematodes in Soils Jun-hyeong Park, Sun-jung Kim, Jin-ho Choi, Min-ho Yoon, Doug-young Chung, and Hye-Jin Kim* Departmnet of Bio-environmental Chemistry, College of Agriculture and Life Science, Chungnam National University Daejeon Korea 305-764 Envioronmental concerns by use of chemical pesticides have increased the need for alternative method in the control of plant-parasitic nematodes. Biological control is considered eco-friendly and a promising alternative in pest and disease management. A wide range of organisms are known to be effective in control of plant-parasitic nematodes. Fungal biological control is a hopeful research area and there is constant attention in the use of fungi for the control of nematodes. In this review, plant-parasitic nematodes with reference to soils and biological control and nematophagous fungi are dicussed. Key words: Biological control, Nematophagous fungi, Plant-parasitic nematodes, Soil Introduction but most interest has been focused on nematophagous fungi, especially those that restrain their hosts with specialized traps (Kerry, 1990). Since the discovery Nematodes, water-filled pore spaces in the soil where of nematode-trapping fungi (Linford and Yap, 1939), organic matter, plant roots, and resources are most a lot of study about nematophagous fungi had been plentiful, are microscopic, worm-like organisms that conducted and still has been carrying out for nematocidal inhabit water films. nematode, most abundant in the agents. In this paper, recent advances in the field of upper soil layers, generally ranges from one to ten -2 biological control of plant-parasitic nematodes with million individuals m (Peterson and Luxton, 1982; nematophagous fungi will be evaluated. -
Network Hubs in Root-Associated Fungal Metacommunities Hirokazu Toju1,2* , Akifumi S
Toju et al. Microbiome (2018) 6:116 https://doi.org/10.1186/s40168-018-0497-1 RESEARCH Open Access Network hubs in root-associated fungal metacommunities Hirokazu Toju1,2* , Akifumi S. Tanabe3 and Hirotoshi Sato4 Abstract Background: Although a number of recent studies have uncovered remarkable diversity of microbes associated with plants, understanding and managing dynamics of plant microbiomes remain major scientific challenges. In this respect, network analytical methods have provided a basis for exploring “hub” microbial species, which potentially organize community-scale processes of plant–microbe interactions. Methods: By compiling Illumina sequencing data of root-associated fungi in eight forest ecosystems across the Japanese Archipelago, we explored hubs within “metacommunity-scale” networks of plant–fungus associations. In total, the metadata included 8080 fungal operational taxonomic units (OTUs) detected from 227 local populations of 150 plant species/taxa. Results: Few fungal OTUs were common across all the eight forests. However, in each of the metacommunity-scale networks representing northern four localities or southern four localities, diverse mycorrhizal, endophytic, and pathogenic fungi were classified as “metacommunity hubs,” which were detected from diverse host plant taxa throughout a climatic region. Specifically, Mortierella (Mortierellales), Cladophialophora (Chaetothyriales), Ilyonectria (Hypocreales), Pezicula (Helotiales), and Cadophora (incertae sedis) had broad geographic and host ranges across the northern (cool-temperate) region, while Saitozyma/Cryptococcus (Tremellales/Trichosporonales) and Mortierella as well as some arbuscular mycorrhizal fungi were placed at the central positions of the metacommunity-scale network representing warm-temperate and subtropical forests in southern Japan. Conclusions: The network theoretical framework presented in this study will help us explore prospective fungi and bacteria, which have high potentials for agricultural application to diverse plant species within each climatic region. -
Fungal Biodiversity to Biotechnology
Appl Microbiol Biotechnol (2016) 100:2567–2577 DOI 10.1007/s00253-016-7305-2 MINI-REVIEW Fungal biodiversity to biotechnology Felipe S. Chambergo1 & Estela Y. Valencia2 Received: 30 October 2015 /Revised: 31 December 2015 /Accepted: 5 January 2016 /Published online: 25 January 2016 # Springer-Verlag Berlin Heidelberg 2016 Abstract Fungal habitats include soil, water, and extreme Introduction environments. With around 100,000 fungus species already described, it is estimated that 5.1 million fungus species exist BThe international community is increasingly aware of the on our planet, making fungi one of the largest and most di- link between biodiversity and sustainable development. verse kingdoms of eukaryotes. Fungi show remarkable meta- More and more people realize that the variety of life on this bolic features due to a sophisticated genomic network and are planet, its ecosystems and their impacts form the basis for our important for the production of biotechnological compounds shared wealth, health and well-being^ (Ban Ki-moon, that greatly impact our society in many ways. In this review, Secretary-General, United Nations; in SCBD 2014). These we present the current state of knowledge on fungal biodiver- words show that Earth’s biological resources are vital to sity, with special emphasis on filamentous fungi and the most humanity’s economic and social development. The recent discoveries in the field of identification and production Convention on Biological Diversity (CBD) established the of biotechnological compounds. More than 250 fungus spe- following objectives: (i) conservation of biological diversity, cies have been studied to produce these biotechnological com- (ii) sustainable use of its components, and (iii) the fair and pounds.