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Developments in Fungal Taxonomy
CLINICAL MICROBIOLOGY REVIEWS, July 1999, p. 454–500 Vol. 12, No. 3 0893-8512/99/$04.00ϩ0 Copyright © 1999, American Society for Microbiology. All Rights Reserved. Developments in Fungal Taxonomy JOSEP GUARRO,* JOSEPA GENE´, AND ALBERTO M. STCHIGEL Unitat de Microbiologia, Departament de Cie`ncies Me`diques Ba`siques, Facultat de Medicina i Cie`ncies de la Salut, Universitat Rovira i Virgili, 43201 Reus, Spain INTRODUCTION .......................................................................................................................................................454 THE CONCEPT OF SPECIES IN FUNGI .............................................................................................................455 PHYLOGENY AND EVOLUTION...........................................................................................................................455 NOMENCLATURE.....................................................................................................................................................456 CURRENT MYCOLOGICAL TYPING METHODS..............................................................................................457 Morphology..............................................................................................................................................................457 Downloaded from Molecular Techniques ............................................................................................................................................459 Other Techniques....................................................................................................................................................460 -
Epidemiological, Clinical and Diagnostic Aspects of Sheep Conidiobolomycosis in Brazil
Ciência Rural, Santa Maria,Epidemiological, v.46, n.5, p.839-846, clinical mai, and 2016 diagnostic aspects of sheep conidiobolomycosis http://dx.doi.org/10.1590/0103-8478cr20150935 in Brazil. 839 ISSN 1678-4596 MICROBIOLOGY Epidemiological, clinical and diagnostic aspects of sheep conidiobolomycosis in Brazil Aspectos epidemiológicos, clínicos e de diagnóstico da conidiobolomicose ovina no Brasil Carla WeiblenI Daniela Isabel Brayer PereiraII Valéria DutraIII Isabela de GodoyIII Luciano NakazatoIII Luís Antonio SangioniI Janio Morais SanturioIV Sônia de Avila BottonI* — REVIEW — ABSTRACT As lesões da conidiobolomicose normalmente são de caráter granulomatoso e necrótico, apresentando-se sob duas formas Conidiobolomycosis is an emerging disease caused clínicas: rinofacial e nasofaríngea. O presente artigo tem como by fungi of the cosmopolitan genus Conidiobolus. Particular objetivo revisar as principais características da doença em ovinos, strains of Conidiobolus coronatus, Conidiobolus incongruus and particularizando a epidemiologia, assim como os aspectos clínicos Conidiobolus lamprauges, mainly from tropical or sub-tropical e o diagnóstico das infecções causadas por Conidiobolus spp. no origin, cause the mycosis in humans and animals, domestic or Brasil. Neste País, a enfermidade é endêmica nas regiões nordeste wild. Lesions are usually granulomatous and necrotic in character, e centro-oeste, afetando ovinos predominantemente de raças presenting two clinical forms: rhinofacial and nasopharyngeal. deslanadas, ocasionando a morte na grande maioria dos casos This review includes the main features of the disease in sheep, with estudados. As espécies do fungo responsáveis pelas infecções an emphasis on the epidemiology, clinical aspects, and diagnosis em ovinos são C. coronatus e C. lamprauges e a forma clínica of infections caused by Conidiobolus spp. -
Sporothrix Schenckii: ➢ Thermal Dimorphic
Subcutaneous mycoses ➢1-Mycetoma ➢2-Sporotrichosis ➢3-Chromoblastomycosis ➢4-Rhinosporidiosis ➢5- Lobomycosis ➢6- Entomophthoramycosis Sporotrichosis Rose gardener’s disease Chronic desease Agent Sporothrix schenckii: ➢ Thermal dimorphic ➢ In soil ➢ On decaying vegetation,plants,plant products (hay, straw, sphagnum moss), and a variety of animals (cats) ➢ less than 37° C (hyphal) ➢ 37° C (yeast) ➢ Sporothrix brasiliensis ➢ Sporothrix globosa Epidemiology ➢Worldwide ➢Tropical regions ➢Mexico ➢Brazile ➢France ➢USA Occupational disease: ➢Farmers ➢ ➢Workers ➢Gardeners ➢Florists Predisposing factors: ➢Trauma ➢Inhalation (very rarely) ➢HIV Clinical Syndromes 1-lymphocutaneous 2-Fixed cutaneous 3- Osteoarticular involvement 4-Pulmonary 5-Systemic Primary infection 1-Lymphocutaneous sporotrichosis 2-Fixed cutaneous sporotrichosis: Fixed cutaneous sporotrichosis verrucous-type sporotrichosis localized cutaneous type Paronychia sporotrichosis Osteoarticular involvement Pulmonary sporotrichosis: ➢Alcoholic ➢Pulmonary tuberculosis, diabetes mellitus and steroid ➢A productive cough ➢Low-grade fever ➢Weight loss Systemic sporotrichosis Transmission: ➢Dog bite ➢parrot bite ➢Insects bite ➢Cases of animal-to-human transmission Laboratory Diagnosis: 1-Collection of samples: ➢Drainage from skin lesions ➢Exudates ➢Pus ➢Blood ➢Pulmonary secretions ➢Tissue biopsy specimens 2-Direct examination ➢Gram ➢PAS ➢GMS ➢H & E ❖Yeast Cells ❖Asteroid body: Elongated Buds (“Cigar Body”) Wet Mount BHI Blood 37˚C Yeast with Elongated Daughter Cell Biopsy of subcutaneous tissue -
Pathogenicity Classification of Fungi Status December 2014 (CGM/141218-03)
Classification of Organisms: Pathogenicity classification of fungi Status December 2014 (CGM/141218-03) COGEM advice CGM/141218-03 Pathogenicity classification of fungi COGEM advice CGM/141218-03 Dutch Regulations Genetically Modified Organisms In the Decree on Genetically Modified Organisms (GMO Decree) and its accompanying more detailed Regulations (GMO Regulations) genetically modified micro-organisms are grouped in four pathogenicity classes, ranging from the lowest pathogenicity Class 1 to the highest Class 4.1 The pathogenicity classifications are used to determine the containment level for working in laboratories with GMOs. A micro-organism of Class 1 should at least comply with one of the following conditions: a) the micro-organism does not belong to a species of which representatives are known to be pathogenic for humans, animals or plants, b) the micro-organism has a long history of safe use under conditions without specific containment measures, c) the micro-organism belongs to a species that includes representatives of class 2, 3 or 4, but the particular strain does not contain genetic material that is responsible for the virulence, d) the micro-organism has been shown to be non-virulent through adequate tests. A micro-organism is grouped in Class 2 when it can cause a disease in humans or animals whereby it is unlikely to spread within the population while an effective prophylaxis, treatment or control strategy exists, as well as an organism that can cause a disease in plants. A micro-organism is grouped in Class 3 when it can cause a serious disease in humans or animals whereby it is likely to spread within the population while an effective prophylaxis, treatment or control strategy exists. -
Histopathology of Important Fungal Infections
Journal of Pathology of Nepal (2019) Vol. 9, 1490 - 1496 al Patholo Journal of linic gist C of of N n e o p ti a a l- u i 2 c 0 d o n s 1 s 0 a PATHOLOGY A m h t N a e K , p d of Nepal a l a M o R e d n i io ca it l A ib ss xh www.acpnepal.com oc g E iation Buildin Review Article Histopathology of important fungal infections – a summary Arnab Ghosh1, Dilasma Gharti Magar1, Sushma Thapa1, Niranjan Nayak2, OP Talwar1 1Department of Pathology, Manipal College of Medical Sciences, Pokhara, Nepal. 2Department of Microbiology, Manipal College of Medical Sciences , Pokhara, Nepal. ABSTRACT Keywords: Fungus; Fungal infections due to pathogenic or opportunistic fungi may be superficial, cutaneous, subcutaneous Mycosis; and systemic. With the upsurge of at risk population systemic fungal infections are increasingly common. Opportunistic; Diagnosis of fungal infections may include several modalities including histopathology of affected tissue Systemic which reveal the morphology of fungi and tissue reaction. Fungi can be in yeast and / or hyphae forms and tissue reactions may range from minimal to acute or chronic granulomatous inflammation. Different fungi should be differentiated from each other as well as bacteria on the basis of morphology and also clinical correlation. Special stains like GMS and PAS are helpful to identify fungi in tissue sections. INTRODUCTION Correspondence: Dr Arnab Ghosh, MD Fungal infections or mycoses may be caused by Department of Pathology, pathogenic fungi which infect healthy individuals or by Manipal College of Medical Sciences, Pokhara, Nepal. -
Group of Microorganisms at the Animal-Fungal Boundary
16 Aug 2002 13:56 AR AR168-MI56-14.tex AR168-MI56-14.SGM LaTeX2e(2002/01/18) P1: GJC 10.1146/annurev.micro.56.012302.160950 Annu. Rev. Microbiol. 2002. 56:315–44 doi: 10.1146/annurev.micro.56.012302.160950 First published online as a Review in Advance on May 7, 2002 THE CLASS MESOMYCETOZOEA: A Heterogeneous Group of Microorganisms at the Animal-Fungal Boundary Leonel Mendoza,1 John W. Taylor,2 and Libero Ajello3 1Medical Technology Program, Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing Michigan, 48824-1030; e-mail: [email protected] 2Department of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102; e-mail: [email protected] 3Centers for Disease Control and Prevention, Mycotic Diseases Branch, Atlanta Georgia 30333; e-mail: [email protected] Key Words Protista, Protozoa, Neomonada, DRIP, Ichthyosporea ■ Abstract When the enigmatic fish pathogen, the rosette agent, was first found to be closely related to the choanoflagellates, no one anticipated finding a new group of organisms. Subsequently, a new group of microorganisms at the boundary between an- imals and fungi was reported. Several microbes with similar phylogenetic backgrounds were soon added to the group. Interestingly, these microbes had been considered to be fungi or protists. This novel phylogenetic group has been referred to as the DRIP clade (an acronym of the original members: Dermocystidium, rosette agent, Ichthyophonus, and Psorospermium), as the class Ichthyosporea, and more recently as the class Mesomycetozoea. Two orders have been described in the mesomycetozoeans: the Der- mocystida and the Ichthyophonida. So far, all members in the order Dermocystida have been pathogens either of fish (Dermocystidium spp. -
Monograph on Dematiaceous Fungi
Monograph On Dematiaceous fungi A guide for description of dematiaceous fungi fungi of medical importance, diseases caused by them, diagnosis and treatment By Mohamed Refai and Heidy Abo El-Yazid Department of Microbiology, Faculty of Veterinary Medicine, Cairo University 2014 1 Preface The first time I saw cultures of dematiaceous fungi was in the laboratory of Prof. Seeliger in Bonn, 1962, when I attended a practical course on moulds for one week. Then I handled myself several cultures of black fungi, as contaminants in Mycology Laboratory of Prof. Rieth, 1963-1964, in Hamburg. When I visited Prof. DE Varies in Baarn, 1963. I was fascinated by the tremendous number of moulds in the Centraalbureau voor Schimmelcultures, Baarn, Netherlands. On the other hand, I was proud, that El-Sheikh Mahgoub, a Colleague from Sundan, wrote an internationally well-known book on mycetoma. I have never seen cases of dematiaceous fungal infections in Egypt, therefore, I was very happy, when I saw the collection of mycetoma cases reported in Egypt by the eminent Egyptian Mycologist, Prof. Dr Mohamed Taha, Zagazig University. To all these prominent mycologists I dedicate this monograph. Prof. Dr. Mohamed Refai, 1.5.2014 Heinz Seeliger Heinz Rieth Gerard de Vries, El-Sheikh Mahgoub Mohamed Taha 2 Contents 1. Introduction 4 2. 30. The genus Rhinocladiella 83 2. Description of dematiaceous 6 2. 31. The genus Scedosporium 86 fungi 2. 1. The genus Alternaria 6 2. 32. The genus Scytalidium 89 2.2. The genus Aurobasidium 11 2.33. The genus Stachybotrys 91 2.3. The genus Bipolaris 16 2. -
Rhinosporidium Seeberi: a Human Pathogen from a Novel Group of Aquatic Protistan Parasites
Research Rhinosporidium seeberi: A Human Pathogen from a Novel Group of Aquatic Protistan Parasites David N. Fredricks,*† Jennifer A. Jolley,* Paul W. Lepp,* Jon C. Kosek,† and David A. Relman*† *Stanford University, Stanford, California, USA; and †Veterans Affairs, Palo Alto Health Care System, Palo Alto, California, USA Rhinosporidium seeberi, a microorganism that can infect the mucosal surfaces of humans and animals, has been classified as a fungus on the basis of morphologic and histochemical characteristics. Using consensus polymerase chain reaction (PCR), we amplified a portion of the R. seeberi 18S rRNA gene directly from infected tissue. Analysis of the aligned sequence and inference of phylogenetic relationships showed that R. seeberi is a protist from a novel clade of parasites that infect fish and amphibians. Fluorescence in situ hybridization and R. seeberi-specific PCR showed that this unique 18S rRNA sequence is also present in other tissues infected with R. seeberi. Our data support the R. seeberi phylogeny recently suggested by another group. R. seeberi is not a classic fungus, but rather the first known human pathogen from the DRIPs clade, a novel clade of aquatic protistan parasites (Ichthyosporea). Rhinosporidiosis manifests as slow-growing, that has been difficult to classify. Recently, tumorlike masses, usually of the nasal mucosa or R. seeberi has been considered a fungus, but it was ocular conjunctivae of humans and animals. originally thought to be a protozoan parasite (2). Patients with nasal involvement often have Its morphologic characteristics resemble those of unilateral nasal obstruction or bleeding due to Coccidioides immitis: both organisms have polyp formation. The diagnosis is established by mature stages that consist of large, thick-walled, observing the characteristic appearance of the organism in tissue biopsies (Figure 1). -
1 §4-71A-24 LIST of NONRESTRICTED MICROORGANISMS October 25, 2001 SCIENTIFIC NAME FUNGI Absidia Coerulea Absidia Corymbifera Ab
§4-71A-24 LIST OF NONRESTRICTED MICROORGANISMS October 25, 2001 SCIENTIFIC NAME FUNGI Absidia coerulea Absidia corymbifera Absidia ramosa Absidia spinosa Acremonium falciforme Acremonium kiliense Acremonium recifei Acremonium vitis Agaricus bitorquis Agaricus bisporus Agaricus campestris Agaricus sp. (Portabello mushroom) Alternaria alternata Alternaria geophilia Apiotrichum humicola Arthrobotrys - all species in genus Aspergillus candidus Aspergillus clavatus Aspergillus cremeus Aspergillus flavipipes Aspergillus flavus Aspergillus fumigatus Aspergillus glaucus Aspergillus nidulans Aspergillus niger Aspergillus ochraceus Aspergillus restrictus Aspergillus terreus Aspergillus ustus Aspergillus versicolor Aspergillus wentii Asteromyces cruciatus Aureobasidium pullulans Auricularia polytricha Bipolaris hawaiiensis Blastomyces dermatitidis Blastoschizomyces capitatus Boletus californicus Boletus granulatus Boletus luteus 1 Nonrestricted Microorganisms §4-71A-24 SCIENTIFIC NAME Boletus variegatus Byssochlamys fulva Candida albicans Candida famata Candida geochares Candida glabrata Candida humicola Candida kefyr Candida krusei Candida lipolytica Candida lusitaniae Candida parapsilosis Candida pseudotropicalis Candida quilliermondii Candida rugosa Candida stellatoidea Candida tropicalis Candida zeylanoides Candelabrella - all species in genus Chaetomium globosum Chrysosporium keratinophilum Chrysosporium liquorum Chrysosporium pruinosum Cladosporium bantianum Cladosporium carrionii Cladosporium trichoides Collybia velutipes Cryptococcus albidus -
Chromoblastomycosis Patricia Chang1, Elba Arana2, Roberto Arenas3
2XU'HUPDWRORJ\2QOLQH Case Report Chromoblastomycosis Patricia Chang1, Elba Arana2, Roberto Arenas3 1Department of Dermatology, Hospital General de Enfermedades IGSS and Hospital Ángeles, Guatemala, 2Elective student, Hospital General de Enfermedades IGSS and Hospital Ángeles, Guatemala, 3Mycology section, “Dr. Manuel Gea González” Hospital, Mexico City, Mexico Corresponding author: Dr. Patricia Chang, E-mail: [email protected] ABSTRACT Chromoblastomycosis is a subcutaneous, chronic, granulomatous mycosis that occurs more frequently in tropical and subtropical countries. We report a case of chromoblastomycosis of the earlobe due to Fonsecaea sp in a male patient of 34 years old, due to its uncommon localization. Key words: Chromoblastomycosis; Fonsecaea pedrosoi; Fonsecaea compacta; Cladosporium carrionii; Fumagoid cells INTRODUCTION plate, hematic crusts and one retroauricular nodule with slightly warty appearance (Figs. 1 and 2). The rest of the The chromoblastomycosis is a sub cutaneous mycosis physical exam was within normal limits. in tropical and subtropical areas considered as an American disease, the main agents are Fonsecaea The patient says that his disease started 3 years ago pedrosoi, in endemic areas of tropical and subtropical with a small asymptomatic “pimple” in his right ear environments; Fonsecaea compacta, Cladosporium that slowly increased its size until he decided to consult. carrionii. The diagnosis of the disease is through the In the last 6 months he had an occasional itch and presence of fumagoids cells. was prescribed different antibiotics and non-specific creams. He does not remember bruising the area. In our environment, chromoblastomycosis is the third most common subcutaneous mycosis. It predominates Three clinical diagnosis were made based on the in the lower limbs in warty form and F pedrosoi is the clinical data: chromoblastomycosis; leishmaniasis; most frequent etiological agent. -
Nasal Rhinosporidiosis in South Africa: Review of Literature and Report of a Case
http://dx.doi.org/10.17159/2519-0105/2017/v72no9a4 420 > CLINICAL REVIEW Nasal Rhinosporidiosis in South Africa: Review of Literature and Report of a Case. SADJ October 2017, Vol 72 no 9 p420 - p423 MMJ Masilela1, MS Selepe2, L Masilo.3 Abstract Background Background: Rhinosporidiosis is a rare chronic Rhinosporodiosis is a rare chronic granulomatous infection granulomatous infection presenting primarily on the that presents as sessile or pedunculated polypoid lesion, mucous membrane of nasal cavities, nasopharynx and primarily affecting the mucous membrane of nasal oral cavity. Rhinosporidium seeberi has been identified cavities, nasopharynx and oral cavity.1,2 Whilst extranasal as the causative agent; however recent studies have involvement is rare, skin, eyes and bone, amongst other implicated a waterborne organism, the cyanobacterium sites, may also be affected and it can occasionally present Microcystis aeruginosa, as the cause. It is endemic in as disseminated disease.3-5 The condition is believed India and Sri Lanka where 90% of all infections occur. The to be caused by Rhinosporidium seeberi but recent aim of this paper is to review literature on rhinosporidiosis studies have implicated a waterborne organism, the and to report on one of the sporadic cases encountered cyanobacterium Microcystis aeruginosa.1,6,7 A molecular in South Africa, Gauteng province. study on the polyps of rhinosporidiosis detected 16S rRNA gene in round bodies.6 This confirmed Microcystis Case presentation: A 17 year old black male patient aeruginosa as a causative agent. The presumed mode presented with a pedunculated nasal mass causing of infection is through traumatised epithelium, most nasal obstruction. -
Mediastinal Mass in a Healthy Adolescent at the Children's
Chest clinic CASE BASED DISCUSSIONS Thorax: first published as 10.1136/thoraxjnl-2014-205764 on 10 October 2014. Downloaded from Mediastinal mass in a healthy adolescent at The Children’s Hospital at Westmead, Australia Ameneh Khatami,1 Alex C Outhred,1 Philip N Britton,1,2 Emilie Huguon,3 David J E Lord,4 Melanie Wong,5 Amanda Charlton,6 Alison M Kesson,1,2 David Isaacs1 For numbered affiliations see Ameneh Khatami and Emilie Huguon gamma release assay (IGRA) on whole blood was end of article. A previously well adolescent from the tropical positive. Percutaneous core biopsies of the medias- fi fi Correspondence to South Paci c island of Futuna was transferred due tinal mass demonstrated fungal hyphae in a broin- Dr Ameneh Khatami, to a 3-month to 4-month history of intermittent flammatory background and Splendore–Hoeppli Department of Infectious fevers, anorexia, weight loss, lethargy and haemop- phenomena (SHP) (figure 2A). Diseases and Microbiology, tysis. A Mantoux test was negative. CT scan ’ The Children s Hospital at demonstrated a large mediastinal mass and lymph- Westmead, Locked Bag 4001, Alison M Kesson and David Isaacs Westmead 2145, Australia; adenopathy with broncho-vascular compression, A positive IGRA in an adolescent from a [email protected]. and bilateral pleural and pericardial effusions, TB-endemic region is not unexpected. The histo- gov.au, ameneh.khatami@ (figure 1A). At admission, he was persistently gmail.com pathology suggests an invasive fungal infection, and febrile with non-tender cervical lymphadenopathy the patient’s raised eosinophil count would be con- Received 19 May 2014 and hepatomegaly, and had moderate respiratory sistent with this.