Phytohormone Priming: Regulator for Heavy Metal Stress in Plants
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Polyamines Protect Escherichia Coli Cells from the Toxic Effect of Oxygen
Polyamines protect Escherichia coli cells from the toxic effect of oxygen Manas K. Chattopadhyay, Celia White Tabor, and Herbert Tabor* Laboratory of Biochemistry and Genetics, Building 8, Room 223, National Institute of Diabetes, Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892 Contributed by Herbert Tabor, December 31, 2002 Wild-type Escherichia coli cells grow normally in 95% O2͞5% CO2. aliquots were diluted into VB medium and spread on LB plates In contrast, cells that cannot make polyamines because of muta- for viable cell counts. tions in the biosynthetic pathway are rapidly killed by incubation For the experiments studying the toxicity of hydrogen perox- in 95% O2͞5% CO2. Addition of polyamines prevents the toxic ide, the deprived cells were incubated overnight in limiting Ϫ effect of oxygen, permitting cell survival and optimal growth. glucose with and without the addition of putrescine (10 4 M) and Ϫ5 Oxygen toxicity can also be prevented if the growth medium spermidine (10 M) to an OD600 of 0.15–0.2. Additional glucose contains an amino acid mixture or if the polyamine-deficient cells (0.4%) was then added to each culture, and after a further contain a manganese-superoxide dismutase (Mn-SOD) plasmid. incubation for 2 h, the cells were harvested by centrifugation and Partial protection is afforded by the addition of 0.4 M sucrose or 0.4 washed twice with 100 mM potassium phosphate (pH 7) to M sorbitol to the growth medium. We also report that concentra- remove extracellular amines that might react directly with the tions of H2O2 that are nontoxic to wild-type cells or to mutant cells hydrogen peroxide. -
The Role of Polyamine Uptake Transporters on Growth and Development of Arabidopsis Thaliana
THE ROLE OF POLYAMINE UPTAKE TRANSPORTERS ON GROWTH AND DEVELOPMENT OF ARABIDOPSIS THALIANA Jigarkumar Patel A Dissertation Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2015 Committee: Paul Morris, Advisor Wendy D Manning Graduate Faculty Representative Vipaporn Phuntumart Scott Rogers Ray Larsen © 2015 Jigarkumar Patel All Rights Reserved iii ABSTRACT Paul Morris, Advisor Transgenic manipulation of polyamine levels has provided compelling evidence that polyamines enable plants to respond to environmental cues by activation of stress and developmental pathways. Here we show that the chloroplasts of A. thaliana and soybeans contain both an arginine decarboxylase, and an arginase/agmatinase. These two enzymes combine to synthesize putrescine from arginine. Since the sequences of plant arginases show conservation of key residues and the predicted 3D structures of plant agmatinases overlap the crystal structure of the enzyme from Deinococcus radiodurans, we suggest that these enzymes can synthesize putrescine, whenever they have access to the substrate agmatine. Finally, we show that synthesis of putrescine by ornithine decarboxylase takes place in the ER. Thus A. thaliana has two, and soybeans have three separate pathways for the synthesis of putrescine. This study also describes key changes in plant phenotypes in response to altered transport of polyamines. iv Dedicated to my father, Jayantilal Haribhai Patel v ACKNOWLEDGMENTS I would like to thank my advisor, Dr. Paul F. Morris, for helping me learn and grow during my Ph.D. Dr. Morris has an open door policy, and he was always available to answer my questions and provide helpful suggestions. -
Florigen Family Chromatin Recruitment, Competition and Target Genes
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.04.934026; this version posted February 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Florigen family chromatin recruitment, competition and target genes 2 Yang Zhu1, Samantha Klasfeld1, Cheol Woong Jeong1,3†, Run Jin1, Koji Goto4, 3 Nobutoshi Yamaguchi1,2† and Doris Wagner1* 4 1 Department of Biology, University of Pennsylvania, 415 S. University Ave, 5 Philadelphia, PA 19104, USA 6 2 Current address: Science and Technology, Nara Institute of Science and Technology, 7 8916-5 Takayama-cho, Ikoma-shi, Nara 630-0192, Japan 8 3 Current address: LG Economic Research Institute, LG Twin tower, Seoul 07336, 9 Korea 10 4 Research Institute for Biological Sciences, Okayama Prefecture, 7549-1, Kibichuoh- 11 cho, Kaga-gun, Okayama, 716-1241, Japan 12 *Correspondence: [email protected] 13 † equal contribution 14 15 16 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.04.934026; this version posted February 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 17 Abstract 18 Plants monitor seasonal cues, such as day-length, to optimize life history traits including 19 onset of reproduction and inflorescence architecture 1-3. -
Polyamine and Ethylene Biosynthesis in Relation to Somatic Embryogenesis in Carrot (Daucus Carota L.) Cell Cultures
Polyamines and Ethylene: Biochemistry, Physiology, and Interactions, HE Flores, RN Arteca, JC Shannon, eds, Copyright 1990, American Society of Plant Physiologists Polyamine and Ethylene Biosynthesis in Relation to Somatic Embryogenesis in Carrot (Daucus carota L.) Cell Cultures Subhash C. Minocha, Cheryl A. Roble, Akhtar J. Khan, Nancy S. Papa, Andrew I. Samuelsen, and Rakesh Minocha Department of Plant Biology, University of New Hampshire, Durham, New Hampshire 03824 (S.C.M., C.A.R., A.J.K., N.S.P., A.I.S.); and USDA Forest Service, Northeast Forest Experiment Station, Durham, New Hampshire 03824 (R.M.) INTRODUCTION Carrot cell cultures provide a model experimental system for the analysis of biochemical and molecular events associated with morphogenesis in plants (3, 4, 5, 14). Among the biochemical changes accompanying somatic embryogenesis in this tissue is an increased biosynthesis ofpolyamines (1, 2, 7, 10, 11, 13). A variety of inhibitors of polyamine biosynthetic enzymes have been used to analyze the role of polyamines in somatic embryogenesis. A summary of our work on the effects of DFMO, DFMA, MGBG and CHAP on somatic embryogenesis, cellular polyamine levels, and activities of ADC, ODC, AdoMet decarboxylase, and AdoMet-synthetase in carrot cell cultures is reported here. Details of materials and methods and results are published elsewhere (6, 8, 9, 12, 13). The results obtained so far support our working hypothesis (7,13) that (a) ethylene is a major suppressor of embryogenesis, and its production is promoted by auxin; and (b) promotion of polyamine biosynthesis through increased utilization of S-adenosylmethionine may adversely affect ACC and ethylene syntheses, which could, in turn, promote somatic embryogenesis. -
A Genetic Framework for Regulation and Seasonal Adaptation of Shoot Architecture in Hybrid Aspen
A genetic framework for regulation and seasonal adaptation of shoot architecture in hybrid aspen Jay P. Mauryaa,b, Pal C. Miskolczia, Sanatkumar Mishraa, Rajesh Kumar Singha, and Rishikesh P. Bhaleraoa,1 aUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 87 Umeå, Sweden; and bDepartment of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India Edited by Ronald R. Sederoff, North Carolina State University, Raleigh, NC, and approved April 14, 2020 (received for review March 14, 2020) Shoot architecture is critical for optimizing plant adaptation and time–related transcription factor RAV1 has been validated in productivity. In contrast with annuals, branching in perennials branching in trees (17–19). However, information on branching native to temperate and boreal regions must be coordinated with control in perennials is fragmented, and there is a significant gap seasonal growth cycles. How branching is coordinated with in our knowledge of how branching is controlled and integrated seasonal growth is poorly understood. We identified key compo- with seasonal growth cycles in perennial trees (20). Therefore, nents of the genetic network that controls branching and its using functional genetic approaches, we elucidated the genetic regulation by seasonal cues in the model tree hybrid aspen. network that mediates control of branching and its regulation by Our results demonstrate that branching and its control by sea- seasonal cues in the model tree hybrid aspen. These studies re- sonal cues is mediated by mutually antagonistic action of aspen veal the key role played by the mutually antagonistic action of orthologs of the flowering regulators TERMINAL FLOWER 1 LAP1 and TFL1 in mediating control of branching and its re- (TFL1)andAPETALA1 (LIKE APETALA 1/LAP1). -
The Complex Origins of Strigolactone Signalling in Land Plants
bioRxiv preprint doi: https://doi.org/10.1101/102715; this version posted January 25, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Article - Discoveries The complex origins of strigolactone signalling in land plants Rohan Bythell-Douglas1, Carl J. Rothfels2, Dennis W.D. Stevenson3, Sean W. Graham4, Gane Ka-Shu Wong5,6,7, David C. Nelson8, Tom Bennett9* 1Section of Structural Biology, Department of Medicine, Imperial College London, London, SW7 2Integrative Biology, 3040 Valley Life Sciences Building, Berkeley CA 94720-3140 3Molecular Systematics, The New York Botanical Garden, Bronx, NY. 4Department of Botany, 6270 University Boulevard, Vancouver, British Colombia, Canada 5Department of Medicine, University of Alberta, Edmonton, Alberta, Canada 6Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada 7BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, China. 8Department of Botany and Plant Sciences, University of California, Riverside, CA 92521 USA 9School of Biology, University of Leeds, Leeds, LS2 9JT, UK *corresponding author: Tom Bennett, [email protected] Running title: Evolution of strigolactone signalling 1 bioRxiv preprint doi: https://doi.org/10.1101/102715; this version posted January 25, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. ABSTRACT Strigolactones (SLs) are a class of plant hormones that control many aspects of plant growth. -
The Interaction of Cytokinin and Strigolactone in Controlling Shoot Branching in Arabidopsis Thaliana
The Interaction of Cytokinin and Strigolactone in controlling Shoot Branching in Arabidopsis thaliana By Neelam Chaudhary Imperial College London Department of Life Sciences November 2013 A thesis submitted for the degree of Doctor of Philosophy and the Diploma of Imperial College London 1 For my Father (Late) and Mother They struggled hard to strengthen my faith in Almighty Allah and supported me to fulfil my dreams and to achieve my goals through their constant unconditional love, encouragement and prayers. For Scientists especially Life Scientists They spare time learning new ways to understand and solve problems in hopes of paving a better future for newer generations. They are more dedicated to making solid achievements than in running after swift but synthetic happiness. 2 ABSTRACT Shoot branching is regulated by auxin, cytokinin (CK) and strigolactone (SL). Cytokinin, being the only promoter of shoot branching, is antagonistic in function to auxin and strigolactone, which inhibit shoot branching. There is a close relationship between auxin and strigolactone, mediating each other to suppress shoot branching. Strigolactone reduces auxin transport from the buds, thus arresting bud outgrowth. On the other hand, auxin increases strigolactone production to control apical dominance. Antagonistic interaction between auxin and cytokinin has been reported as auxin inhibits lateral bud outgrowth by limiting CK supply to axillary buds. Previously, it has been found that levels of tZ-type CKs are extremely low in xylem sap of strigolactone mutants of Arabidopsis and pea.The current research aimed to explore the interaction between cytokinin and strigolactone, especially the regulatory mechanisms behind these low cytokinin levels. -
The Effect of Crosstalk Between Abscisic Acid (ABA) And
Genetic Manipulation of the Cross-talk between Abscisic Acid and Strigolactones and Their Biosynthetic Link during Late Tillering in Barley Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) Der Naturwissenschaftlichen Fakultät I Biowissenschaften der Martin-Luther-Universität Halle-Wittenberg, vorgelegt von Herrn M.Sc. Hongwen Wang geb. am 10.02.1985 in Gaomi, China Gutachter: 1. Prof. Dr. Nicolaus von Wirén 2. Prof. Dr. Klaus Humbeck 3. Prof. Dr. Harro J. Bouwmeester Datum der Verteidigung: 27.04.2017, Halle (Saale) Contents 1. Introduction ............................................................................................................................ 1 1.1 Genetics of tillering in barley ........................................................................................... 1 1.2 Functional role of abscisic acid in branch or tiller development ...................................... 4 1.3 Abscisic acid biosynthesis and metabolism ...................................................................... 5 1.4 Functional role of strigolactones in branch or tiller development .................................... 7 1.5 Biosynthetic pathway of strigolactones ............................................................................ 8 1.6 The cross-talk between abscisic acid and strigolactones biosynthetic pathways ........... 10 1.7 Aim of the present study ..................................................................................................11 2. Materials and methods ........................................................................................................ -
Counteractive Effects of Sugar and Strigolactone on Leaf Senescence of Rice in Darkness
agronomy Article Counteractive Effects of Sugar and Strigolactone on Leaf Senescence of Rice in Darkness Ikuo Takahashi 1, Kai Jiang 2 and Tadao Asami 1,* 1 Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan; [email protected] 2 SUSTech Academy for Advanced and Interdisciplinary Studies, Southern University of Science and Technology, Shenzhen 518055, China; [email protected] * Correspondence: [email protected]; Tel.: +81-3-5841-5157 Abstract: Plant hormones strigolactones (SLs) were recently reported to induce leaf senescence. It was reported that sugar suppresses SL-induced leaf senescence in the dark; however, the mechanism of the crosstalk between SLs and the sugar signal in leaf senescence remains elusive. To understand this mechanism, we studied the effects of glucose (Glc) on various senescence-related parameters in leaves of the rice. We found that sugars alleviated SL-induced leaf senescence under dark conditions, and the co-treatment with Glc suppressed SL-induced hydrogen peroxide generation and membrane deterioration. It also suppressed the expression levels of antioxidant enzyme genes upregulated by SL, suggesting that Glc alleviates SL-induced senescence by inhibiting the oxidative processes. SLs can adapt to nutrient deficiency, a major factor of leaf senescence; therefore, we suggest the possibility that Glc and SL monitor the nutrient status in plants to regulate leaf senescence. Keywords: leaf senescence; plant hormone; rice; reactive oxygen species; strigolactone; sugar Citation: Takahashi, I.; Jiang, K.; Asami, T. Counteractive Effects of 1. Introduction Sugar and Strigolactone on Leaf Leaf senescence is a major developmental stage of the leaf and is accompanied by Senescence of Rice in Darkness. -
What Are Strigolactones and Why Are They Important to Plants and Soil Microbes? Steven M Smith
Smith BMC Biology 2014, 12:19 http://www.biomedcentral.com/1741-7007/12/19 QUESTION AND ANSWER Open Access Q&A: What are strigolactones and why are they important to plants and soil microbes? Steven M Smith Abstract crops. The scientific (Latin) name for these witchweeds derives from Striga, a mythical witch apparently with or- What are strigolactones? Strigolactones are signaling igins in ancient Rome but known in several parts of compounds made by plants. They have two main southern and central Europe. The witch Striga was functions: first, as endogenous hormones to control thought to be filled with hatred towards others, espe- plant development, and second as components of cially children, feeding on their life essence, or consum- root exudates to promote symbiotic interactions ing them without remorse. Striga species are members between plants and soil microbes. Some plants that of the broomrape family (Orobanchaceae), most mem- are parasitic on other plants have established a third bers of which are parasitic on other plants. function, which is to stimulate germination of their The lactone part of the strigolactone name refers to seeds when in close proximity to the roots of a the chemical structure. In chemistry, a lactone is a cyclic suitable host plant. It is this third function that led to ester-thecondensationproductofanalcoholgroupandacar- the original discovery and naming of strigolactones. boxylic acid group in the same molecule. In fact, strigolac- tones have two lactone rings (Figure 2). Members of the What are strigolactones? strigolactone family differ in the chemical modifications to the core structure and in their stereochemical (three- Strigolactones are signaling compounds made by plants. -
Transcriptomic Analysis Reveals Hormonal Control of Shoot Branching in Salix Matsudana
Article Transcriptomic Analysis Reveals Hormonal Control of Shoot Branching in Salix matsudana Juanjuan Liu 1 , Bingbing Ni 1, Yanfei Zeng 1, Caiyun He 1 and Jianguo Zhang 1,2,* 1 State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China; [email protected] (J.L.); [email protected] (B.N.); [email protected] (Y.Z.); [email protected] (C.H.) 2 Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China * Correspondence: [email protected] Received: 26 January 2020; Accepted: 29 February 2020; Published: 2 March 2020 Abstract: Shoot branching is regulated by axillary bud activities, which subsequently grow into branches. Phytohormones play a central role in shoot branching control, particularly with regard to auxin, cytokinins (CKs), strigolactones (SLs), and gibberellins (GAs). To further study the molecular basis for the shoot branching in Salix matsudana, how shoot branching responds to hormones and regulatory pathways was investigated, and potential genes involved in the regulation of shoot branching were identified. However, how these positive and inhibitory processes work on the molecular level remains unknown. RNA-Seq transcriptome expression analysis was used to elucidate the mechanisms underlying shoot branching. In total, 102 genes related to auxin, CKs, SLs, and GAs were differentially expressed in willow development. A majority of the potential genes associated with branching were differentially expressed at the time of shoot branching in S. matsudana, which have more number of branching. -
Lecture Outline
The transition from vegetative to reproductive growth Vegetative phase change is required to allow a shoot to be able to produce flowers English Ivy (Hedera helix) A shoot is only competent to flower once it has passed from the juvenile to Adult the adult phase, a transition sometimes marked by gross morphological Juvenile leaf Adult leaf changes Juvenile The vegetative (juvenile to adult) phase transition is controlled by the relative abundance of microRNAs 156 and 172 Acacia koa Reprinted with permission friom Huijscer, P., and Schmid, M. (2011) The control of developmental phase transitions in plants. Development 138: 4117-4129. The nature of the flowering signal was elusive for decades Conversion of meristem vegetative to floral Environmental cues “Florigen” Julius von Sachs Mikhail Chailakhyan (1832-1897) (1901-1991) a.k.a. The “Father of Plant Physiology”. He was the first Proved the existence of a florigenic compound and to propose the existence of a chemical compound demonstrated that it is a small molecule, produced in capable of inducing flowering leaves and translocated to the shoot apex via the produced in leaves of illuminated plants phloem; he named it “florigen” Credits: Romanov, 2012 Russian J Plant Phys 4:443-450; Redrawn from Ayre and Turgeon, 2004 Several physiological pathways regulate flowering These are called ‘enabling pathways’ as they regulate floral competence of the meristem Vernalization Photoperiodic Autonomous GA-dependent pathway pathway pathway Where is florigen? FLOWERING Molecular repressors LOCUS C (FLC) of flowering, also Note: This model called ‘anti-florigenic’ corresponds to signals, maintain the Arabidopsis but many of its modules have vegetative state of counterparts in other the meristem species Vegetative Florigen Flowering Adapted from Reeves, P.H., and Coupland, G.