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Florigen Family Chromatin Recruitment, Competition and Target Genes
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.04.934026; this version posted February 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Florigen family chromatin recruitment, competition and target genes 2 Yang Zhu1, Samantha Klasfeld1, Cheol Woong Jeong1,3†, Run Jin1, Koji Goto4, 3 Nobutoshi Yamaguchi1,2† and Doris Wagner1* 4 1 Department of Biology, University of Pennsylvania, 415 S. University Ave, 5 Philadelphia, PA 19104, USA 6 2 Current address: Science and Technology, Nara Institute of Science and Technology, 7 8916-5 Takayama-cho, Ikoma-shi, Nara 630-0192, Japan 8 3 Current address: LG Economic Research Institute, LG Twin tower, Seoul 07336, 9 Korea 10 4 Research Institute for Biological Sciences, Okayama Prefecture, 7549-1, Kibichuoh- 11 cho, Kaga-gun, Okayama, 716-1241, Japan 12 *Correspondence: [email protected] 13 † equal contribution 14 15 16 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.04.934026; this version posted February 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 17 Abstract 18 Plants monitor seasonal cues, such as day-length, to optimize life history traits including 19 onset of reproduction and inflorescence architecture 1-3. -
A Genetic Framework for Regulation and Seasonal Adaptation of Shoot Architecture in Hybrid Aspen
A genetic framework for regulation and seasonal adaptation of shoot architecture in hybrid aspen Jay P. Mauryaa,b, Pal C. Miskolczia, Sanatkumar Mishraa, Rajesh Kumar Singha, and Rishikesh P. Bhaleraoa,1 aUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 87 Umeå, Sweden; and bDepartment of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India Edited by Ronald R. Sederoff, North Carolina State University, Raleigh, NC, and approved April 14, 2020 (received for review March 14, 2020) Shoot architecture is critical for optimizing plant adaptation and time–related transcription factor RAV1 has been validated in productivity. In contrast with annuals, branching in perennials branching in trees (17–19). However, information on branching native to temperate and boreal regions must be coordinated with control in perennials is fragmented, and there is a significant gap seasonal growth cycles. How branching is coordinated with in our knowledge of how branching is controlled and integrated seasonal growth is poorly understood. We identified key compo- with seasonal growth cycles in perennial trees (20). Therefore, nents of the genetic network that controls branching and its using functional genetic approaches, we elucidated the genetic regulation by seasonal cues in the model tree hybrid aspen. network that mediates control of branching and its regulation by Our results demonstrate that branching and its control by sea- seasonal cues in the model tree hybrid aspen. These studies re- sonal cues is mediated by mutually antagonistic action of aspen veal the key role played by the mutually antagonistic action of orthologs of the flowering regulators TERMINAL FLOWER 1 LAP1 and TFL1 in mediating control of branching and its re- (TFL1)andAPETALA1 (LIKE APETALA 1/LAP1). -
Florigen Revisited: Proteins of the FT/CETS/PEBP/PKIP/Ybhb Family
bioRxiv preprint doi: https://doi.org/10.1101/2021.04.16.440192; this version posted April 16, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. 1 Breakthrough Report 2 3 Florigen revisited: proteins of the FT/CETS/PEBP/PKIP/YbhB family may be the enzymes 4 of small molecule metabolism 5 6 Short title: Florigen-family proteins may be enzymes 7 8 Olga Tsoy1,4 and Arcady Mushegian2,3* 9 10 11 1 Chair of Experimental Bioinformatics, TUM School of Life Sciences Weihenstephan, Technical 12 University of Munich (TUM), 3, Maximus-von-Imhof-Forum, Freising, 85354, Germany 13 14 2 Molecular and Cellular Biology Division, National Science Foundation, 2415 Eisenhower 15 Avenue, Alexandria, Virginia 22314, USA 16 17 3 Clare Hall College, University of Cambridge, Cambridge CB3 9AL, United Kingdom 18 19 4 current address: Chair of Computational Systems Biology, University of Hamburg, 20 Notkestrasse, 9, 22607, Hamburg, Germany 21 22 * corresponding author: [email protected] 23 24 25 26 27 The author responsible for distribution of materials integral to the findings presented in this 28 article in accordance with the policy described in the Instructions for Authors 29 (www.plantcell.org) is Arcady Mushegian ([email protected]). 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.04.16.440192; this version posted April 16, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. -
The Complex Origins of Strigolactone Signalling in Land Plants
bioRxiv preprint doi: https://doi.org/10.1101/102715; this version posted January 25, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Article - Discoveries The complex origins of strigolactone signalling in land plants Rohan Bythell-Douglas1, Carl J. Rothfels2, Dennis W.D. Stevenson3, Sean W. Graham4, Gane Ka-Shu Wong5,6,7, David C. Nelson8, Tom Bennett9* 1Section of Structural Biology, Department of Medicine, Imperial College London, London, SW7 2Integrative Biology, 3040 Valley Life Sciences Building, Berkeley CA 94720-3140 3Molecular Systematics, The New York Botanical Garden, Bronx, NY. 4Department of Botany, 6270 University Boulevard, Vancouver, British Colombia, Canada 5Department of Medicine, University of Alberta, Edmonton, Alberta, Canada 6Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada 7BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, China. 8Department of Botany and Plant Sciences, University of California, Riverside, CA 92521 USA 9School of Biology, University of Leeds, Leeds, LS2 9JT, UK *corresponding author: Tom Bennett, [email protected] Running title: Evolution of strigolactone signalling 1 bioRxiv preprint doi: https://doi.org/10.1101/102715; this version posted January 25, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. ABSTRACT Strigolactones (SLs) are a class of plant hormones that control many aspects of plant growth. -
The Interaction of Cytokinin and Strigolactone in Controlling Shoot Branching in Arabidopsis Thaliana
The Interaction of Cytokinin and Strigolactone in controlling Shoot Branching in Arabidopsis thaliana By Neelam Chaudhary Imperial College London Department of Life Sciences November 2013 A thesis submitted for the degree of Doctor of Philosophy and the Diploma of Imperial College London 1 For my Father (Late) and Mother They struggled hard to strengthen my faith in Almighty Allah and supported me to fulfil my dreams and to achieve my goals through their constant unconditional love, encouragement and prayers. For Scientists especially Life Scientists They spare time learning new ways to understand and solve problems in hopes of paving a better future for newer generations. They are more dedicated to making solid achievements than in running after swift but synthetic happiness. 2 ABSTRACT Shoot branching is regulated by auxin, cytokinin (CK) and strigolactone (SL). Cytokinin, being the only promoter of shoot branching, is antagonistic in function to auxin and strigolactone, which inhibit shoot branching. There is a close relationship between auxin and strigolactone, mediating each other to suppress shoot branching. Strigolactone reduces auxin transport from the buds, thus arresting bud outgrowth. On the other hand, auxin increases strigolactone production to control apical dominance. Antagonistic interaction between auxin and cytokinin has been reported as auxin inhibits lateral bud outgrowth by limiting CK supply to axillary buds. Previously, it has been found that levels of tZ-type CKs are extremely low in xylem sap of strigolactone mutants of Arabidopsis and pea.The current research aimed to explore the interaction between cytokinin and strigolactone, especially the regulatory mechanisms behind these low cytokinin levels. -
The Effect of Crosstalk Between Abscisic Acid (ABA) And
Genetic Manipulation of the Cross-talk between Abscisic Acid and Strigolactones and Their Biosynthetic Link during Late Tillering in Barley Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) Der Naturwissenschaftlichen Fakultät I Biowissenschaften der Martin-Luther-Universität Halle-Wittenberg, vorgelegt von Herrn M.Sc. Hongwen Wang geb. am 10.02.1985 in Gaomi, China Gutachter: 1. Prof. Dr. Nicolaus von Wirén 2. Prof. Dr. Klaus Humbeck 3. Prof. Dr. Harro J. Bouwmeester Datum der Verteidigung: 27.04.2017, Halle (Saale) Contents 1. Introduction ............................................................................................................................ 1 1.1 Genetics of tillering in barley ........................................................................................... 1 1.2 Functional role of abscisic acid in branch or tiller development ...................................... 4 1.3 Abscisic acid biosynthesis and metabolism ...................................................................... 5 1.4 Functional role of strigolactones in branch or tiller development .................................... 7 1.5 Biosynthetic pathway of strigolactones ............................................................................ 8 1.6 The cross-talk between abscisic acid and strigolactones biosynthetic pathways ........... 10 1.7 Aim of the present study ..................................................................................................11 2. Materials and methods ........................................................................................................ -
Counteractive Effects of Sugar and Strigolactone on Leaf Senescence of Rice in Darkness
agronomy Article Counteractive Effects of Sugar and Strigolactone on Leaf Senescence of Rice in Darkness Ikuo Takahashi 1, Kai Jiang 2 and Tadao Asami 1,* 1 Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan; [email protected] 2 SUSTech Academy for Advanced and Interdisciplinary Studies, Southern University of Science and Technology, Shenzhen 518055, China; [email protected] * Correspondence: [email protected]; Tel.: +81-3-5841-5157 Abstract: Plant hormones strigolactones (SLs) were recently reported to induce leaf senescence. It was reported that sugar suppresses SL-induced leaf senescence in the dark; however, the mechanism of the crosstalk between SLs and the sugar signal in leaf senescence remains elusive. To understand this mechanism, we studied the effects of glucose (Glc) on various senescence-related parameters in leaves of the rice. We found that sugars alleviated SL-induced leaf senescence under dark conditions, and the co-treatment with Glc suppressed SL-induced hydrogen peroxide generation and membrane deterioration. It also suppressed the expression levels of antioxidant enzyme genes upregulated by SL, suggesting that Glc alleviates SL-induced senescence by inhibiting the oxidative processes. SLs can adapt to nutrient deficiency, a major factor of leaf senescence; therefore, we suggest the possibility that Glc and SL monitor the nutrient status in plants to regulate leaf senescence. Keywords: leaf senescence; plant hormone; rice; reactive oxygen species; strigolactone; sugar Citation: Takahashi, I.; Jiang, K.; Asami, T. Counteractive Effects of 1. Introduction Sugar and Strigolactone on Leaf Leaf senescence is a major developmental stage of the leaf and is accompanied by Senescence of Rice in Darkness. -
What Are Strigolactones and Why Are They Important to Plants and Soil Microbes? Steven M Smith
Smith BMC Biology 2014, 12:19 http://www.biomedcentral.com/1741-7007/12/19 QUESTION AND ANSWER Open Access Q&A: What are strigolactones and why are they important to plants and soil microbes? Steven M Smith Abstract crops. The scientific (Latin) name for these witchweeds derives from Striga, a mythical witch apparently with or- What are strigolactones? Strigolactones are signaling igins in ancient Rome but known in several parts of compounds made by plants. They have two main southern and central Europe. The witch Striga was functions: first, as endogenous hormones to control thought to be filled with hatred towards others, espe- plant development, and second as components of cially children, feeding on their life essence, or consum- root exudates to promote symbiotic interactions ing them without remorse. Striga species are members between plants and soil microbes. Some plants that of the broomrape family (Orobanchaceae), most mem- are parasitic on other plants have established a third bers of which are parasitic on other plants. function, which is to stimulate germination of their The lactone part of the strigolactone name refers to seeds when in close proximity to the roots of a the chemical structure. In chemistry, a lactone is a cyclic suitable host plant. It is this third function that led to ester-thecondensationproductofanalcoholgroupandacar- the original discovery and naming of strigolactones. boxylic acid group in the same molecule. In fact, strigolac- tones have two lactone rings (Figure 2). Members of the What are strigolactones? strigolactone family differ in the chemical modifications to the core structure and in their stereochemical (three- Strigolactones are signaling compounds made by plants. -
Discovery of Flowering Hormone (Florigen) Receptor and Its Crystal Structure
5 Life Science PF Activity Report 2011 #29 Discovery of Flowering Hormone (Florigen) Receptor and Its Crystal Structure lorigen, a mobile floral induction protein, initiates the flowering process of activating floral identity genes. Many details of the molecular function of florigen remain unclear. In the present study, we found that the rice florigen FHd3a directly interacts with 14-3-3 (GF14) proteins, but not with the transcription factor OsFD1. We further deter- mined the 2.4-Å crystal structure of a tripartite Hd3a-14-3-3-OsFD1 complex [1]. The determined crystal structure offers biological insights into 14-3-3 proteins and how they play a key role in mediating an indirect interaction between Hd3a and OsFD1. Our biochemical, biophysical, and physiological experiments using rice cultured cells and transgenic rice plants revealed that 14-3-3 proteins are intracellular receptors of florigen to activate floral identity genes. Florigen is produced in leaves and transmitted NMR experiments. One consensus sequence among through the phloem to the shoot apex, where it induces the bZIP transcription factors, including OsFD1, that flowering. A number of recent reports have provided reportedly bind FT and its homologs, was found to be evidence that Arabidopsis FT protein (Hd3a in rice) is a R-x-x-(S/T)-A-P-F, which resembles the 14-3-3 protein- key component of florigen [2]. In the shoot apical meri- binding motif R-S-x-(pS/pT)-x-P. The presence of this stem, FT activates floral identity genes such as AP1 sequence in OsFD1 raises the possibility that the inter- transcription and induces flowering by interacting with action between Hd3a and OsFD1 is indirect and is me- Figure 2 the bZIP transcription factor FD, although the details of diated by 14-3-3 proteins. -
Transcriptomic Analysis Reveals Hormonal Control of Shoot Branching in Salix Matsudana
Article Transcriptomic Analysis Reveals Hormonal Control of Shoot Branching in Salix matsudana Juanjuan Liu 1 , Bingbing Ni 1, Yanfei Zeng 1, Caiyun He 1 and Jianguo Zhang 1,2,* 1 State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China; [email protected] (J.L.); [email protected] (B.N.); [email protected] (Y.Z.); [email protected] (C.H.) 2 Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China * Correspondence: [email protected] Received: 26 January 2020; Accepted: 29 February 2020; Published: 2 March 2020 Abstract: Shoot branching is regulated by axillary bud activities, which subsequently grow into branches. Phytohormones play a central role in shoot branching control, particularly with regard to auxin, cytokinins (CKs), strigolactones (SLs), and gibberellins (GAs). To further study the molecular basis for the shoot branching in Salix matsudana, how shoot branching responds to hormones and regulatory pathways was investigated, and potential genes involved in the regulation of shoot branching were identified. However, how these positive and inhibitory processes work on the molecular level remains unknown. RNA-Seq transcriptome expression analysis was used to elucidate the mechanisms underlying shoot branching. In total, 102 genes related to auxin, CKs, SLs, and GAs were differentially expressed in willow development. A majority of the potential genes associated with branching were differentially expressed at the time of shoot branching in S. matsudana, which have more number of branching. -
Florigen Governs Shoot Regeneration
Florigen Governs Shoot Regeneration Yaarit Kutsher Agricultural Research Organization Michal Fisler Agricultural Research Organization Adi DORON-FAIGENBOIM Agricultural Research Organization Moshe Reuveni ( [email protected] ) Agricultural Research Organization Research Article Keywords: reproductive stage (owering), protocols of shoot regeneration in plants, tobacco origen mRNA Posted Date: April 30th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-450479/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/16 Abstract It is widely known that during the reproductive stage (owering), plants do not root well. Most protocols of shoot regeneration in plants utilize juvenile tissue. Adding these two realities together encouraged us to study the role of origen in shoot regeneration. Mature tobacco tissue that expresses the endogenous tobacco origen mRNA regenerates poorly, while juvenile tissue that does not express the origen regenerates shoots well. Inhibition of Nitric Oxide (NO) synthesis reduced shoot regeneration as well as promoted owering and increased tobacco origen level. In contrast, the addition of NO (by way of NO donor) to the tissue increased regeneration, delayed owering, reduced tobacco origen mRNA. Ectopic expression of origen genes in tobacco or tomato decreased regeneration capacity signicantly. Overexpression pear PcFT2 gene increased regeneration capacity. During regeneration, origen mRNA was not changed. We conclude that origen presence in mature tobacco leaves reduces roots and shoots regeneration and is the possible reason for the age-related decrease in regeneration capacity. Introduction Plant regeneration by rebuilding new organs (organogenesis) results from new organ formation through dedifferentiation of differentiated plant cells and reorganization of cell division to create new organ meristems and new vascular connection between the explant and the newly regenerating organ 1,2. -
Florigen Coming of Age After 70 Years
The Plant Cell, Vol. 18, 1783–1789, August 2006, www.plantcell.org ª 2006 American Society of Plant Biologists CURRENT PERSPECTIVE ESSAY Florigen Coming of Age after 70 Years The report that FT mRNA is the long-sought florigen, or at least is universal in plants (at least in closely related species and part of it (Huang et al., 2005), has attracted much attention and different photoperiodic response types). However, despite Downloaded from https://academic.oup.com/plcell/article/18/8/1783/6115260 by guest on 03 October 2021 was ranked the number three breakthrough of 2005 by the numerous attempts to extract florigen and several reports of journal Science (Anonymous, 2005). This exciting discovery has extracts with flower-inducing activity, which all turned out to be brought to center stage one of the major outstanding questions nonreproducible, florigen remained a physiological concept in plant biology: What is the nature of florigen? In this essay, I rather than a chemical entity. As a result, the florigen hypoth- summarize the classical experiments that led to the florigen esis fell into disrepute, and a rival hypothesis, proposing that hypothesis and how molecular-genetic approaches combined flowering would be induced by a specific ratio of known with physiological methods have advanced our understanding hormones and metabolites, gained favor (Bernier, 1988; of florigen. I also discuss the possible universality of florigen and Bernier et al., 1993). some of the remaining questions regarding flowering and other photoperiod-controlled phenomena involving long-distance sig- naling in plants. MOLECULAR-GENETIC STUDIES OF FLOWERING As the physiological-biochemical approaches to flowering had FLORIGEN AS A PHYSIOLOGICAL CONCEPT begun to stagnate, along came molecular genetics with a new approach to the study of flowering.