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DNA-Based Methods for Freshwater Biodiversity Conservation
DNA-based methods for freshwater biodiversity conservation - Phylogeographic analysis of noble crayfish (Astacus astacus) and new insights into the distribution of crayfish plague DISSERTATION zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften Fachbereich 7: Natur- und Umweltwissenschaften der Universität Koblenz-Landau Campus Landau vorgelegt am 16. Januar 2013 von Anne Schrimpf geboren am 21. September 1984 in Frankfurt am Main Referent: Prof. Dr. Ralf Schulz Koreferent: Prof. Dr. Klaus Schwenk - This thesis is dedicated to my grandparents - Content CONTENT CONTENT ............................................................................................................... 5 ABSTRACT ............................................................................................................ 8 ZUSAMMENFASSUNG ........................................................................................ 10 ABBEREVIATIONS .............................................................................................. 13 GENERAL INTRODUCTION ................................................................................ 15 Conservation of biological diversity ........................................................................ 15 The freshwater crayfish ............................................................................................ 17 General ............................................................................................................... 17 The noble crayfish (Astacus astacus) ................................................................ -
Crustacea-Arthropoda) Fauna of Sinop and Samsun and Their Ecology
J. Black Sea/Mediterranean Environment Vol. 15: 47- 60 (2009) Freshwater and brackish water Malacostraca (Crustacea-Arthropoda) fauna of Sinop and Samsun and their ecology Sinop ve Samsun illeri tatlısu ve acısu Malacostraca (Crustacea-Arthropoda) faunası ve ekolojileri Mehmet Akbulut1*, M. Ruşen Ustaoğlu2, Ekrem Şanver Çelik1 1 Çanakkale Onsekiz Mart University, Fisheries Faculty, Çanakkale-Turkey 2 Ege University, Fisheries Faculty, Izmir-Turkey Abstract Malacostraca fauna collected from freshwater and brackishwater in Sinop and Samsun were studied from 181 stations between February 1999 and September 2000. 19 species and 4 subspecies belonging to 15 genuses were found in 134 stations. In total, 23 taxon were found: 11 Amphipoda, 6 Decapoda, 4 Isopoda, and 2 Mysidacea. Limnomysis benedeni is the first time in Turkish Mysidacea fauna. In this work at the first time recorded group are Gammarus pulex pulex, Gammarus aequicauda, Gammarus uludagi, Gammarus komareki, Gammarus longipedis, Gammarus balcanicus, Echinogammarus ischnus, Orchestia stephenseni Paramysis kosswigi, Idotea baltica basteri, Idotea hectica, Sphaeroma serratum, Palaemon adspersus, Crangon crangon, Potamon ibericum tauricum and Carcinus aestuarii in the studied area. Potamon ibericum tauricum is the most encountered and widespread species. Key words: Freshwater, brackish water, Malacostraca, Sinop, Samsun, Turkey Introduction The Malacostraca is the largest subgroup of crustaceans and includes the decapods such as crabs, mole crabs, lobsters, true shrimps and the stomatopods or mantis shrimps. There are more than 22,000 taxa in this group representing two third of all crustacean species and contains all the larger forms. *Corresponding author: [email protected] 47 Malacostracans play an important role in aquatic ecosystems and therefore their conservation is important. -
Circadian Clocks in Crustaceans: Identified Neuronal and Cellular Systems
Circadian clocks in crustaceans: identified neuronal and cellular systems Johannes Strauss, Heinrich Dircksen Department of Zoology, Stockholm University, Svante Arrhenius vag 18A, S-10691 Stockholm, Sweden TABLE OF CONTENTS 1. Abstract 2. Introduction: crustacean circadian biology 2.1. Rhythms and circadian phenomena 2.2. Chronobiological systems in Crustacea 2.3. Pacemakers in crustacean circadian systems 3. The cellular basis of crustacean circadian rhythms 3.1. The retina of the eye 3.1.1. Eye pigment migration and its adaptive role 3.1.2. Receptor potential changes of retinular cells in the electroretinogram (ERG) 3.2. Eyestalk systems and mediators of circadian rhythmicity 3.2.1. Red pigment concentrating hormone (RPCH) 3.2.2. Crustacean hyperglycaemic hormone (CHH) 3.2.3. Pigment-dispersing hormone (PDH) 3.2.4. Serotonin 3.2.5. Melatonin 3.2.6. Further factors with possible effects on circadian rhythmicity 3.3. The caudal photoreceptor of the crayfish terminal abdominal ganglion (CPR) 3.4. Extraretinal brain photoreceptors 3.5. Integration of distributed circadian clock systems and rhythms 4. Comparative aspects of crustacean clocks 4.1. Evolution of circadian pacemakers in arthropods 4.2. Putative clock neurons conserved in crustaceans and insects 4.3. Clock genes in crustaceans 4.3.1. Current knowledge about insect clock genes 4.3.2. Crustacean clock-gene 4.3.3. Crustacean period-gene 4.3.4. Crustacean cryptochrome-gene 5. Perspective 6. Acknowledgements 7. References 1. ABSTRACT Circadian rhythms are known for locomotory and reproductive behaviours, and the functioning of sensory organs, nervous structures, metabolism and developmental processes. The mechanisms and cellular bases of control are mainly inferred from circadian phenomenologies, ablation experiments and pharmacological approaches. -
Crayfish News Volume 32 Issue 1-2: Page 1
June 2010 Volume 32, Issue 1-2 ISSN: 1023-8174 (print), 2150-9239 (online) The Official Newsletter of the International Association of Astacology Inside this issue: Cover Story 1 Searching for Crayfish in the President’s Corner 2 River Bug, Ukraine Info About IAA18 3 Future Directions 4 Symposium Info Short Articles 6 Male Form 6 Alternation in Spinycheek Crayfish, Orconectes limosus, at Cessy (East-central France): The Discovery of Anomalous Form Males IAA Related News 10 News Items From 11 Around the World Meeting 13 Announcements Literature of 16 Interest to Astacologists Figure 1. Astacus leptodactylus from the River Bug, Ukraine. comparison with other species, information n official opportunity for the author on A. pachypus is very limited (Souty-Grosset A to travel to the Ukraine was the 2nd et al., 2006). Since no specimens were meeting of the signatories to the available to be photographed for the “Memorandum of Understanding (MoU) on identification guide of crayfish species in the Conservation and Management of the Europe (Pöckl et al., 2006), only a sketch was middle European population of the Great presented. Bustard (Otis tarda)” under the “Convention Feodosia, located on the Crimean of Migratory Species of Wild Animals” (CMS th Peninsula, is not easily reached by airplane, or Bonn Convention) from November 8-12 with the nearest airport being in Simferopol. 2008. There are no direct flights to this region from The author has always dreamed of most European capitals, with connecting visiting the Ukraine in order to collect flights running through Kiev, Moscow or specimens of the thick-clawed crayfish, Istanbul. -
The Catalogue of the Freshwater Crayfish (Crustacea: Decapoda: Astacidae) from Romania Preserved in “Grigore Antipa” National Museum of Natural History of Bucharest
Travaux du Muséum National d’Histoire Naturelle © Décembre Vol. LIII pp. 115–123 «Grigore Antipa» 2010 DOI: 10.2478/v10191-010-0008-5 THE CATALOGUE OF THE FRESHWATER CRAYFISH (CRUSTACEA: DECAPODA: ASTACIDAE) FROM ROMANIA PRESERVED IN “GRIGORE ANTIPA” NATIONAL MUSEUM OF NATURAL HISTORY OF BUCHAREST IORGU PETRESCU, ANA-MARIA PETRESCU Abstract. The largest collection of freshwater crayfish of Romania is preserved in “Grigore Antipa” National Museum of Natural History of Bucharest. The collection consists of 426 specimens of Astacus astacus, A. leptodactylus and Austropotamobius torrentium. Résumé. La plus grande collection d’écrevisses de Roumanie se trouve au Muséum National d’Histoire Naturelle «Grigore Antipa» de Bucarest. Elle comprend 426 exemplaires appartenant à deux genres et trois espèces, Astacus astacus, A. leptodactylus et Austropotamobius torrentium. Key words: Astacidae, Romania, museum collection, catalogue. INTRODUCTION The first paper dealing with the freshwater crayfish of Romania is that of Cosmovici, published in 1901 (Bãcescu, 1967) in which it is about the freshwater crayfish from the surroundings of Iaºi. The second one, much complex, is that of Scriban (1908), who reports Austropotamobius torrentium for the first time, from Racovãþ, Bahna basin (Mehedinþi county). Also Scriban made the first comment on the morphology and distribution of the species Astacus astacus, A. leptodactylus and Austropotamobius torrentium, mentioning their distinctive features. Also, he published the first drawings of these species (cephalothorax). Entz (1912) dedicated a large study to the crayfish of Hungary, where data on the crayfish of Transylvania are included. Probably it is the amplest paper dedicated to the crayfish of the Romanian fauna from the beginning of the last century, with numerous data on the outer morphology, distinctive features between species, with more detailed figures and with the very first morphometric measures, and also with much detailed data on the distribution in Transylvania. -
Estimating the Population Size of Astacus Leptodactylus (Decapoda: Astacidae) by Mark-Recapture Technique in E₣Irdir Lake, Turkey
African Journal of Biotechnology Vol. 10(55), pp. 11778-11783, 21 September, 2011 Available online at http://www.academicjournals.org/AJB DOI: 10.5897/AJB11.758 ISSN 1684–5315 © 2011 Academic Journals Full Length Research Paper Estimating the population size of Astacus leptodactylus (Decapoda: Astacidae) by mark-recapture technique in Eirdir lake, Turkey Yildiz Bolat1*, Yavuz Mazlum2, Aydin Demirci2 and Habil Uur Koca1 1Departmant of Fishing and Fish Processing Technology, Faculty of Fisheries, University of Süleyman Demirel, 32500 Eirdir, Isparta, Turkey. 2Faculty of Fisheries, Mustafa Kemal University, TR-31200 Iskenderun-Hatay, Turkey. Accepted 13 June, 2011 The mark-recapture technique for closed populations was employed to estimate the population size and density of Astacus leptodactylus during August and September, 2005 by using minnow traps of 34 mm mesh size in Eirdir Lake. A total of 600 minnow traps were set randomly along the shoreline at approximately 3, 5 and 7 m depth. The nets were set in the late afternoon to each study depths, and were hauled the next day or after two days. The research was performed two times each month. In August, 1956 adult crayfish and in September, 2756 adult crayfish were marked by cauterization of the carapace. The recapture rates were found to be 3.5% in August and 2.3% in September, respectively. A total of 200 crayfish were randomly selected, 74 females and 126 males. The sex ratio was 1:1.7. Moreover, length and weight data gotten from 200 untagged crayfish showed that females and males differed significantly in their weight, but no significant difference was evident in the carapace length. -
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Distribution and Diversity of Freshwater Crabs (Decapoda: Brachyura: Potamidae, Gecarcinucidae) in Iranian Inland Waters Ardavan Farhadi , Muzaffer Mustafa Harlıoğlu
EISSN 2602-473X AQUATIC SCIENCES AND ENGINEERING Aquat Sci Eng 2018; 33(4): 110-116 • DOI: 10.26650/ASE2018422064 Review Distribution and Diversity of Freshwater Crabs (Decapoda: Brachyura: Potamidae, Gecarcinucidae) in Iranian Inland Waters Ardavan Farhadi , Muzaffer Mustafa Harlıoğlu Cite this article as: Farhadi, A., Harlıoğlu, M.M. (2018). Distribution and Diversity of Freshwater Crabs (Decapoda: Brachyura: Potamidae, Gec- arcinucidae) in Iranian Inland Waters. Aquatic Sciences and Engineering, 33(4): 110-116. ABSTRACT This article reviews the current knowledge of primary freshwater crabs (Decapoda, Brachyura) in Iranian inland waters, with the purpose of classifying the exact number of species, the threat sta- tus, and their distribution and diversity. Previous studies have reported that Iranian inland waters have eight freshwater crab species and there was no accurate information on the distribution of freshwater crab species in Iran. This review article describes that an additional six freshwater crab species, Potamon gedrosianum, P. magnum, P. mesopotamicum, P. ilam, Sodhiana blanfordi, and S. iranica, are also present in Iran. Therefore, there are 14 freshwater crab species currently known in Iran, which belong to two families (Gecarcinucidae and Potamidae). The genus Potamon is rep- resented by 11 species, and the genus Sodhiana is represented by 3 species (found in south and south east of Iran). In addition, this review presents a distribution map and the possible threats for each species. Keywords: Brachyura, decapoda, freshwater crabs, distribution, Iran INTRODUCTION ter swamps, stagnant ponds and rice fields, and even in tree hollows and leaf axils (Yeo et al., Primary freshwater crabs (Yeo et al., 2008, 2012) 2008; Cumberlidge et al., 2009). -
Decapoda, Brachyura
APLICACIÓN DE TÉCNICAS MORFOLÓGICAS Y MOLECULARES EN LA IDENTIFICACIÓN DE LA MEGALOPA de Decápodos Braquiuros de la Península Ibérica bérica I enínsula P raquiuros de la raquiuros B ecápodos D de APLICACIÓN DE TÉCNICAS MORFOLÓGICAS Y MOLECULARES EN LA IDENTIFICACIÓN DE LA MEGALOPA LA DE IDENTIFICACIÓN EN LA Y MOLECULARES MORFOLÓGICAS TÉCNICAS DE APLICACIÓN Herrero - MEGALOPA “big eyes” Leach 1793 Elena Marco Elena Marco-Herrero Programa de Doctorado en Biodiversidad y Biología Evolutiva Rd. 99/2011 Tesis Doctoral, Valencia 2015 Programa de Doctorado en Biodiversidad y Biología Evolutiva Rd. 99/2011 APLICACIÓN DE TÉCNICAS MORFOLÓGICAS Y MOLECULARES EN LA IDENTIFICACIÓN DE LA MEGALOPA DE DECÁPODOS BRAQUIUROS DE LA PENÍNSULA IBÉRICA TESIS DOCTORAL Elena Marco-Herrero Valencia, septiembre 2015 Directores José Antonio Cuesta Mariscal / Ferran Palero Pastor Tutor Álvaro Peña Cantero Als naninets AGRADECIMIENTOS-AGRAÏMENTS Colaboración y ayuda prestada por diferentes instituciones: - Ministerio de Ciencia e Innovación (actual Ministerio de Economía y Competitividad) por la concesión de una Beca de Formación de Personal Investigador FPI (BES-2010- 033297) en el marco del proyecto: Aplicación de técnicas morfológicas y moleculares en la identificación de estados larvarios planctónicos de decápodos braquiuros ibéricos (CGL2009-11225) - Departamento de Ecología y Gestión Costera del Instituto de Ciencias Marinas de Andalucía (ICMAN-CSIC) - Club Náutico del Puerto de Santa María - Centro Andaluz de Ciencias y Tecnologías Marinas (CACYTMAR) - Instituto Español de Oceanografía (IEO), Centros de Mallorca y Cádiz - Institut de Ciències del Mar (ICM-CSIC) de Barcelona - Institut de Recerca i Tecnología Agroalimentàries (IRTA) de Tarragona - Centre d’Estudis Avançats de Blanes (CEAB) de Girona - Universidad de Málaga - Natural History Museum of London - Stazione Zoologica Anton Dohrn di Napoli (SZN) - Universitat de Barcelona AGRAÏSC – AGRADEZCO En primer lugar quisiera agradecer a mis directores, el Dr. -
The Phylogenetic Relationships and Species Richness of Host-Specific Dactylogyrus Parasites Shaped by the Biogeography of Balkan
www.nature.com/scientificreports OPEN The phylogenetic relationships and species richness of host-specifc Dactylogyrus parasites shaped Received: 23 February 2018 Accepted: 17 August 2018 by the biogeography of Balkan Published: xx xx xxxx cyprinids Michal Benovics1, Yves Desdevises2, Jasna Vukić3, Radek Šanda4 & Andrea Šimková1 Parasites exhibiting a high degree of host specifcity are expected to be intimately associated with their hosts. Therefore, the evolution of host-specifc parasites is at least partially shaped by the evolutionary history and distribution of such hosts. Gill ectoparasites of Dactylogyrus (Monogenea) are specifc to cyprinid fsh. In the present study, we investigated the evolutionary history of 47 Dactylogyrus species from the Balkan Peninsula, the Mediteranean region exhibiting the highest cyprinid diversity in Europe, and from central European cyprinids. Phylogenetic analyses revealed four well-supported clades of endemic and non-endemic Dactylogyrus spp. with four basal taxa. Endemic cyprinids with a limited distribution range were parasitized by endemic Dactylogyrus species, but some of them shared several Dactylogyrus species with central European cyprinids. Species delimitation analyses based on molecular data suggest that Dactylogyrus diversity is higher than that defned from morphology. Some endemic cyprinid species harboured Dactylogyrus species of diferent origins, this probably resulting from multiple host switching. Our results support the view that the evolution of Dactylogyrus in the Balkans has been infuenced not only by the historical dispersion and distribution of their cyprinid hosts, but also by recent contacts of non-native cyprinid species with endemic cyprinid fauna in this region. Te species richness of parasitic taxa and their distribution in host species is usually closely related to the history, dispersion and diversity of their hosts1–3. -
General Keywords
General keywords A Ballast, 6, 9–11, 29, 37, 38, 44, 46, 52 Ballast sediments, 339, 645, 653 Abiotic resistance, 647, 648, 654 Ballast water, 29, 37, 38, 44, 52–54, 56, Accidental introductions, 113, 131, 145, 59, 60 234, 645, 646, 700 Ballast water: treatment, 657–661, 664, Activity patterns, 166, 248, 354, 407, 445 665 Age, 240, 244, 246, 263, 264, 281, Basking, 148, 162, 163, 167, 170 291–295 Bern Convention, 516, 630, 633, 634 Age structure, 264 Bioaccumulation, 614 Aggression, 53, 167, 396, 447, 528, 585 Biocontrol, biological control, 95–97, 99, Aggressive behaviour, 279, 283, 495, 146, 153, 205, 383, 523 497, 585, 587 Biodiversity, 86, 96, 114, 123, 152, 186, Alarm odours, 514 187, 200, 202, 204 Alien invasive species, 194, 199, 204 Biofouling, 238 Allelopathy, 224 Biogeography, 123 Allometric growth, 264 Bioindicators, 112, 114 Altricial life history, 283 Biological flexibility, 307, 309, 311, 313, Amphibious plants, 218 315, 317, 319, 321, 323, 325, Anthropogenicdisturbances,426,427,454 327 Antioxidant response, 613, 617, 621 Biological invasions, 396, 430, 437, 627, Aquaculture, 37, 38, 60, 145, 146, 628, 633–635 340–343, 382 Biological plasticity, 11 Aquarium trade, 39, 49, 220, 234, 292, Biomonitoring, 613, 614 357, 383, 628 Biomonotony, 369–376 Artificial canals, 382, 463 Biotic homogenization, 147, 148, 369, 371, 376, 415 B Biotic resistance, 11, 18, 647, 648 Bioturbation, 527, 528, 531 Bait-bucket, 37 Booms and busts, 452 Bait-bucket introductions, 37 Bottlenecks, 10, 396, 517, 640 703 704 General keywords Botulism, 279 -
Astacus Leptodactylus) Populations Carry Aphanomyces Astaci H
Knowledge and Management of Aquatic Ecosystems (2012) 404, 12 © ONEMA, 2012 http://www.kmae-journal.org DOI: 10.1051/kmae/2012006 Recovering Turkish narrow clawed crayfish (Astacus leptodactylus) populations carry Aphanomyces astaci H. Kokko(1), L. Koistinen(1), M.M. Harlioğlu(2), J. Makkonen(1), H. Aydın(3), J. Jussila(1)* Received December 15, 2011 Revised January 25, 2012 Accepted March 6, 2012 Abstract Key-words: Crayfish stocks collapsed in Turkey in mid 1980’s due to crayfish plague Aphanomyces epidemics, with up to 25% survival in some cases. The collapsed stocks astaci, narrow have then recovered slowly and commercial crayfish fishery was reinitiated clawed crayfish, gradually within a decade. We examined the prevalence of Aphanomyces Turkey, İznik, astaci DNA in the narrow clawed crayfish (Astacus leptodactylus) collected Hirfanlı from two Turkish lakes, Lake İznik and Hirfanlı Dam (N = 40 from both sites). The qPCR results, verified by conventional PCR and sequencing, indicated that nearly all sampled crayfish were A. astaci carries with some of them showing gross symptoms of infection, such as tissue erosion and melani- sation, while some did not show any visible symptoms. The prevalence of A. astaci DNA was high in both stocks, being on the average 95% in both Lake İznik and Hirfanlı Dam. Our results show that these stocks are carries of A. astaci, but capable of forming productive stocks which indicates past and contemporary partial resistance adaptation in the host or virulence evo- lution in the A. astaci. RÉSUMÉ Des populations turques d'écrevisses à pattes grêles (Astacus leptodactylus) productives porteuses d'Aphanomyces astaci Mots-clés : Les stocks d'écrevisses se sont effondrés en Turquie à la mi 1980, en raison des Aphanomyces épidémies de peste des écrevisses, avec jusqu'à 25 % de survie dans certains cas.