Journal of Nematology Volume 48 March 2016 Number 1
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Genome-Wide Analysis of Gene Expression in Halicephalobus Mephisto
© COPYRIGHT by Deborah Jane Weinstein 2019 ALL RIGHTS RESERVED GENOME-WIDE ANALYSIS OF GENE EXPRESSION IN HALICEPHALOBUS MEPHISTO (THE DEVIL WORM) BY Deborah Jane Weinstein ABSTRACT The nematode Halicephalobus mephisto was discovered in an isolated aquifer, 1.3km below ground. H. mephisto thrives under extreme conditions including elevated heat (37.2°C) and minimal oxygen, classifying it as an extremophile. H. mephisto is a vital discovery for evolution and adaptation, with particular interest in its thermophilic abilities. Here we report the full transcriptome and genome of H. mephisto. In the process we identified a unique adaptation: over amplification of AIG1 and Hsp70 genes, with 168 and 142 domains respectively. Hsp70 was over-expressed under elevated heat conditions, along with ARMET and Bax inhibitor-1, suggesting these genes help H. mephisto to survive elevated heat. AIG1 was not upregulated in elevated heat suggesting its use for non-heat abiotic stressors such as hypoxia. This paper sheds light on the genomic adaptations that have evolved in H. mephisto to survive its challenging environment. ii TABLE OF CONTENTS ABSTRACT .................................................................................................................. ii LIST OF TABLES ............................................................................................................. iv LIST OF ILLUSTRATIONS .............................................................................................. v LIST OF ABBREVIATIONS ........................................................................................... -
Developmental Plasticity, Ecology, and Evolutionary Radiation of Nematodes of Diplogastridae
Developmental Plasticity, Ecology, and Evolutionary Radiation of Nematodes of Diplogastridae Dissertation der Mathematisch-Naturwissenschaftlichen Fakultät der Eberhard Karls Universität Tübingen zur Erlangung des Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) vorgelegt von Vladislav Susoy aus Berezniki, Russland Tübingen 2015 Gedruckt mit Genehmigung der Mathematisch-Naturwissenschaftlichen Fakultät der Eberhard Karls Universität Tübingen. Tag der mündlichen Qualifikation: 5 November 2015 Dekan: Prof. Dr. Wolfgang Rosenstiel 1. Berichterstatter: Prof. Dr. Ralf J. Sommer 2. Berichterstatter: Prof. Dr. Heinz-R. Köhler 3. Berichterstatter: Prof. Dr. Hinrich Schulenburg Acknowledgements I am deeply appreciative of the many people who have supported my work. First and foremost, I would like to thank my advisors, Professor Ralf J. Sommer and Dr. Matthias Herrmann for giving me the opportunity to pursue various research projects as well as for their insightful scientific advice, support, and encouragement. I am also very grateful to Matthias for introducing me to nematology and for doing an excellent job of organizing fieldwork in Germany, Arizona and on La Réunion. I would like to thank the members of my examination committee: Professor Heinz-R. Köhler and Professor Hinrich Schulenburg for evaluating this dissertation and Dr. Felicity Jones, Professor Karl Forchhammer, and Professor Rolf Reuter for being my examiners. I consider myself fortunate for having had Dr. Erik J. Ragsdale as a colleague for several years, and more than that to count him as a friend. We have had exciting collaborations and great discussions and I would like to thank you, Erik, for your attention, inspiration, and thoughtful feedback. I also want to thank Erik and Orlando de Lange for reading over drafts of this dissertation and spelling out some nuances of English writing. -
Entomopathogenic Nematodes 37
UCLA UCLA Electronic Theses and Dissertations Title Investigating the Neural Circuit for Carbon Dioxide Avoidance Behavior in Caenorhabditis elegans Permalink https://escholarship.org/uc/item/70m1v28x Author Carrillo, Mayra Publication Date 2015 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA Los Angeles Investigating the Neural Circuit for Carbon Dioxide Avoidance Behavior in Caenorhabditis elegans A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Microbiology, Immunology, and Molecular Genetics by Mayra Alejandra Carrillo 2015 ABSTRACT OF THE DISSERTATION Investigating the Neural Circuit for Carbon Dioxide Avoidance Behavior in Caenorhabditis elegans by Mayra Alejandra Carrillo Doctor of Philosophy in Microbiology, Immunology, and Molecular Genetics University of California, Los Angeles, 2015 Professor Elissa A. Hallem, Chair Carbon dioxide (CO2) is a byproduct of oxidative metabolism that can be sensed by different species including mammals, insects, and nematodes and can lead to both physiological and behavioral responses. In the free-living nematode Caenorhabditis elegans the behavioral response can be either avoidance or neutral to CO2, indicating that the behavior is flexible. In this thesis, I investigated the neural basis of behavioral flexibility. We found that the CO2 circuit can be modulated by diverse sensory neurons that respond to ambient oxygen (O2), temperature, and food odor. Additionally, we identified two interneurons downstream of the CO2- sensing BAG neurons, AIY and RIG, that have opposing roles in CO2-evoked responses. A decrease in AIY activity and an increase in RIG activity promote appropriate avoidance behavior to CO2 levels. -
STUDIES on the COPULATORY BEHAVIOUR of the FREE-LIVING NEMATODE PANAGRELLUS REDIVIVUS (GOODEY, 1945). by C.L. DUGGAL M.Sc. (Hons
STUDIES ON THE COPULATORY BEHAVIOUR OF THE FREE-LIVING NEMATODE PANAGRELLUS REDIVIVUS (GOODEY, 1945). by C.L. DUGGAL M.Sc. (Hons. School) Panjab University A thesis submitted for the degree of Doctor of Philosophy in the University of London Imperial College Field Station, Ashurst Lodge, Sunninghill, Ascot, Berkshire. September 1977 2 AtSTRACT The copulatory behaviour of Panagrellus redivivus is described in detail and an attempt is made to relate copulation with the age and reproductive state of the nematodes. Male P. redivivus show both pre- and post-insemination coiling around the female and they use their spicules for probing and for opening the female gonopore. Morphological studies on the spicules have been made at both the light microscope level and the scanning electron microscope level in order to understand their functional importance during copulation. The process of insemination has been studied in some detail and the morphological changes occurring in the sperm during their migration from the seminal vesicle to the seminal receptacle have been recorded. It was found that during migration the sperm formed long chains by attaching themselves anterio-posteriorly, each sperm producing pseudopodial-like projections. The frequency of copulation in the male nematodes and its influence on the number of sperm produced and on the nematode life- span was examined, and compared with the development and longevity of aging virgin males. The number of sperm shed into the uterus of the female at the time of copulation was found to increase with increasing intervals between copulations. Similar observations were also made on the life-span and oocyte production in copulated and virgin females. -
Evaluation of Some Vulval Appendages in Nematode Taxonomy
Comp. Parasitol. 76(2), 2009, pp. 191–209 Evaluation of Some Vulval Appendages in Nematode Taxonomy 1,5 1 2 3 4 LYNN K. CARTA, ZAFAR A. HANDOO, ERIC P. HOBERG, ERIC F. ERBE, AND WILLIAM P. WERGIN 1 Nematology Laboratory, United States Department of Agriculture–Agricultural Research Service, Beltsville, Maryland 20705, U.S.A. (e-mail: [email protected], [email protected]) and 2 United States National Parasite Collection, and Animal Parasitic Diseases Laboratory, United States Department of Agriculture–Agricultural Research Service, Beltsville, Maryland 20705, U.S.A. (e-mail: [email protected]) ABSTRACT: A survey of the nature and phylogenetic distribution of nematode vulval appendages revealed 3 major classes based on composition, position, and orientation that included membranes, flaps, and epiptygmata. Minor classes included cuticular inflations, protruding vulvar appendages of extruded gonadal tissues, vulval ridges, and peri-vulval pits. Vulval membranes were found in Mermithida, Triplonchida, Chromadorida, Rhabditidae, Panagrolaimidae, Tylenchida, and Trichostrongylidae. Vulval flaps were found in Desmodoroidea, Mermithida, Oxyuroidea, Tylenchida, Rhabditida, and Trichostrongyloidea. Epiptygmata were present within Aphelenchida, Tylenchida, Rhabditida, including the diverged Steinernematidae, and Enoplida. Within the Rhabditida, vulval ridges occurred in Cervidellus, peri-vulval pits in Strongyloides, cuticular inflations in Trichostrongylidae, and vulval cuticular sacs in Myolaimus and Deleyia. Vulval membranes have been confused with persistent copulatory sacs deposited by males, and some putative appendages may be artifactual. Vulval appendages occurred almost exclusively in commensal or parasitic nematode taxa. Appendages were discussed based on their relative taxonomic reliability, ecological associations, and distribution in the context of recent 18S ribosomal DNA molecular phylogenetic trees for the nematodes. -
Baujardia Mirabilis Gen. N., Sp. N. from Pitcher Plants and Its
Nematology,2003,V ol.5(3), 405-420 Baujardia mirabilis gen. n., sp. n.from pitcher plants andits phylogenetic position withinPanagrolaimidae (Nematoda: Rhabditida) 1; 2 1 Wim BERT ¤, Irma TANDINGAN DE LEY , Rita VAN DRIESSCHE , Hendrik SEGERS 3 and Paul DE LEY 2 1 Departmentof Biology,Ghent University, Ledeganckstraat 35, 9000 Gent, Belgium 2 Departmentof Nematology,University of California, Riverside, CA 92521,USA 3 FreshwaterLaboratory, Royal Belgium Institute for Natural Sciences, V autierstraat29, 1000 Brussels, Belgium Received:16 September2002; revised: 13 January2003 Acceptedfor publication:13 January2003 Summary – Measurements,line drawings and scanning electromicrographs are provided of Baujardiamirabilis gen.n., sp. n., isolated frompitcher uidof Nepenthesmirabilis fromThailand. The new genus differs from all known nematodes in having two opposing andoffset spermatheca-like pouches at the junction of oviduct and uterus. It also differs from most known Rhabditida in having four cephalicsetae instead of papillae.Phylogenetic analysis of small subunit rDNA sequencedata robustly places the new genus within Panagrolaimidaeas asistertaxon to Panagrellus .Theseunusual nematodes resemble Panagrellus inbodysize (1.8-2.7 mm infemales, 1.3-1.9mm inmales) and in the monodelphic, prodelphic female reproductive system with thickened vaginal walls and prominent postvulvalsac. However, they differ from Panagrellus inthecharacters mentioned above, in their comparatively longer stegostom and intheshape of themale spicules. Because of its aberrant -
Biodiversity, Abundance and Prevalence of Kleptoparasitic Nematodes Living Inside the Gastrointestinal Tract of North American Diplopods
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 12-2017 Life where you least expect it: Biodiversity, abundance and prevalence of kleptoparasitic nematodes living inside the gastrointestinal tract of North American diplopods Gary Phillips University of Tennessee, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Recommended Citation Phillips, Gary, "Life where you least expect it: Biodiversity, abundance and prevalence of kleptoparasitic nematodes living inside the gastrointestinal tract of North American diplopods. " PhD diss., University of Tennessee, 2017. https://trace.tennessee.edu/utk_graddiss/4837 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Gary Phillips entitled "Life where you least expect it: Biodiversity, abundance and prevalence of kleptoparasitic nematodes living inside the gastrointestinal tract of North American diplopods." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Doctor of Philosophy, with a major in Entomology, -
The Use of Non–Mammalian Infection Models to Study the Pathogenicity of Members of the Genus Burkholderia and Pseudomonas Aeruginosa
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2012 The use of non-mammalian infection models to study the pathogenicity of Pseudomonas aeruginosa and members of the genus Burkholderia Schwager, S Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-74401 Dissertation Originally published at: Schwager, S. The use of non-mammalian infection models to study the pathogenicity of Pseudomonas aeruginosa and members of the genus Burkholderia. 2012, University of Zurich, Faculty of Science. The Use of Non–Mammalian Infection Models to Study the Pathogenicity of Members of the Genus Burkholderia and Pseudomonas aeruginosa Dissertation zur Erlangung der naturwissenschaftlichen Doktorwürde (Dr. sc. nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultät der Universität Zürich von Stephan Alois Michael Schwager aus Frauenfeld (TG) Promotionskomitee Prof. Dr. Leo Eberl (Vorsitz) Prof. Dr. Kathrin Riedel Prof. Dr. Jakob Pernthaler Zürich, 2012 Meiner Familie Table of Contents I. Summary ..................................................................................................................................... I II. Zusammenfassung ......................................................................................................................III III. Abbreviations ............................................................................................................................. V 1 -
Nematodes of the Order Rhabditida from Andalucía Oriental, Spain. the Genera Protorhabditis (Osche, 1952) Dougherty, 1953 and D
Journal of Nematology 39(3):263–274. 2007. © The Society of Nematologists 2007. Nematodes of the Order Rhabditida from Andalucía Oriental, Spain. The Genera Protorhabditis (Osche, 1952) Dougherty, 1953 and Diploscapter Cobb, 1913, with Description of P. spiculocrestata sp. n. and a Species Protorhabditis Key J. Abolafia,R.Pen˜a-Santiago Abstract: A new species of the genus Protorhabditis is described from natural areas in the SE Iberian Peninsula. Protorhabditis spiculocrestata sp. n. is distinguished by its body length 387–707 µm in females and 375–546 µm in males, lip very low and flattened, stoma 14–22 µm long, female tail conical-elongate (48–100 µm, c = 6.4–8.3, cЈ = 4.8–7.5), phasmid near anus, male tail conical (20–27 µm, c = 18.3–22.3, cЈ = 1.4–1.5), bursa peloderan closed anteriorly and bears eight papillae (1+2+1+1+3), spicules 23–26 µm long, and gubernaculum 10–16 µm long. Diploscapter coronatus is also presented. Description, measurements and illustrations, including SEM photographs, are provided. A key to species of Protorhabditis is also given as well a compendium of their measure- ments. Key words: description, Diploscapter, key, morphology, new species, Protorhabditis, Rhabditids, SE Spain, SEM, taxonomy. Rhabditid nematodes are an interesting zoological mis (Bütschli, 1873) Sudhaus, 1976, P. tristis (Hirsch- taxon. They are very abundant in all types of soil and mann, 1952) Dougherty, 1955 and D. coronatus (Cobb, sediments of freshwater bodies and play important eco- 1893) Cobb, 1913. Nevertheless, no relevant morpho- logical roles mainly as primary consumers—their free- logical or taxonomical information on them was pro- living forms display saprophagous or bacteriophagous vided in the corresponding publications. -
A Mutualistic Interaction Between a Fungivorous Nematode and a Fungus Within the Endophytic Community of Bromus Tectorum
fungal ecology 5 (2012) 610e623 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/funeco A mutualistic interaction between a fungivorous nematode and a fungus within the endophytic community of Bromus tectorum Melissa A. BAYNESa,*, Danelle M. RUSSELLb, George NEWCOMBEb, Lynn K. CARTAc, Amy Y. ROSSMANd, Adnan ISMAIELd aEnvironmental Science Program, University of Idaho, Moscow, ID 83844, USA bDepartment of Forest, Rangeland and Fire Sciences, University of Idaho, Moscow, ID 83844, USA cNematology Laboratory, United States Department of Agriculture, ARS, Beltsville, MD 20705, USA dSystematic Mycology and Microbiology Laboratory, United States Department of Agriculture, ARS, Beltsville, MD 20705, USA article info abstract Article history: In its invaded range in western North America, Bromus tectorum (cheatgrass) can host more Received 20 October 2011 than 100 sequence-based, operational taxonomic units of endophytic fungi, of which an Revision received 8 February 2012 individual plant hosts a subset. Research suggests that the specific subset is determined by Accepted 21 February 2012 plant genotype, environment, dispersal of locally available endophytes, and mycorrhizal Available online 15 May 2012 associates. But, interactions among members of the endophyte community could also be Corresponding editor: important. In a sampling of 63 sites throughout the invaded range of B. tectorum, a fun- Fernando Vega givorous nematode, Paraphelenchus acontioides, and an endophyte, Fusarium cf. torulosum, were found together in two sites. This positive co-occurrence in the field led to an exper- Keywords: imental investigation of their interaction and its effects on relative abundances within the Cheatgrass endophyte community. In greenhouse and laboratory experiments, we determined first Curvularia inaequalis that P. -
Sixtieth Society of Nematologists Conference Gulf Shores, Alabama
Sixtieth Society of Nematologists Conference Gulf Shores, Alabama September 12 – 16, 2021 LOCAL ARRANGEMENTS COMMITTEE Chair: Kathy Lawrence Department of Entomology & Plant Pathology Auburn University Auburn, Alabama Committee Members: Pat Donald Bisho Lawaju Department of Entomology & Plant Department of Entomology & Plant Pathology Pathology Auburn University Auburn University Auburn, Alabama Auburn, Alabama Kate Turner Marina Rondon Department of Entomology & Plant Department of Entomology & Plant Pathology Pathology Auburn University Auburn University Auburn, Alabama Auburn, Alabama Gary Lawrence Retired Nematologist Program Chair: Kathy Lawrence Professor of Nematology Department of Entomology & Plant Pathology Auburn University Auburn, Alabama 2 Society of Nematologists Executive Board 2020-2021 Andrea Skantar, President Kathy Lawrence, President-Elect Axel Elling, Vice President Sally Stetina, Past President Brent Sipes, Secretary Nathan Schroder, Treasurer Ralf J. Sommer, Editor-in-Chief, JON Churamani Khanal, Website Editor Gary Phillips, Editor, NNL Adrienne Gorney, Executive Member Tesfa Mengistu, Executive Member Travis Faske, Executive Member 3 Society of Nematologists Sixtieth meeting dedications 2021 Dr. Grover C. Smart Jr. 1929-2020 Dr. Smart was one of the first members of SON, a Fellow of SON, and EIC of the JON. Dr. Seymour Dean Van Gundy 1931-2020 Dr. Gundy was instrumental in extablishing the Journal of Nematology, served as the first EIC, a Fellow of SON, and a Honoray Member. 4 ACKNOWLEDGEMENTS The following sponsors have provided support for the meeting: Corteva Bayer Cotton Incorporated Auburn University Department of Entomology and Plant Pathology 5 Sustaining Associates Sustaining Associates are organizations which contribute to the Society and have all the privileges of regular members. To show our appreciation for the generosity of Sustaining Associates, we acknowledge their companies in all our publications as well as on our website. -
Mating Clusters in the Mosquito Parasitic Nematode, Strelkovimermis Spiculatus ⇑ Limin Dong A,B,C, Manar Sanad D, Yi Wang C, Yanli Xu A,B, , Muhammad S.M
Journal of Invertebrate Pathology 117 (2014) 19–25 Contents lists available at ScienceDirect Journal of Invertebrate Pathology journal homepage: www.elsevier.com/locate/jip Mating clusters in the mosquito parasitic nematode, Strelkovimermis spiculatus ⇑ Limin Dong a,b,c, Manar Sanad d, Yi Wang c, Yanli Xu a,b, , Muhammad S.M. Shamseldean d, Randy Gaugler c a Northeast Agricultural University, 59 Mucai Street, Xiangfang District, Harbin 150030, PR China b Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 138 Haping Road, Harbin 150081, PR China c Center for Vector Biology, Rutgers University, 180 Jones Avenue, New Brunswick, NJ 08901-8536, USA d Department of Zoology and Agricultural Nematology, Faculty of Agriculture, Cairo University, 12613 Giza, Egypt article info abstract Article history: Mating aggregations in the mosquito parasitic nematode, Strelkovimermis spiculatus, were investigated in Received 26 November 2013 the laboratory. Female postparasites, through their attraction of males and, remarkably, other females, Accepted 23 January 2014 drive the formation of mating clusters. Clusters may grow in size by merging with other individual or Available online 31 January 2014 clusters. Female molting to the adult stage and reproductive success are enhanced in larger clusters. Male mating behavior is initiated when the female begins to molt to the adult stage by shedding dual juvenile Keywords: cuticles posteriorly. Males coil their tail around the adult cuticle, migrating progressively along the Strelkovimermis spiculatus female in intimate synchrony with the molting cuticle until the vulva is exposed and mating can occur. Aggregation The first arriving male is assured of access to a virgin female, as his intermediate location between the Copulatory plug Male–male competition vulva and subsequently arriving males blocks these competitors.