Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 29 December 2019 doi:10.20944/preprints201912.0374.v1 Peer-reviewed version available at Int. J. Mol. Sci. 2020, 21, 893; doi:10.3390/ijms21030893 Elucidating Binding Sites and Affinities of ERα Agonist and Antagonist to Human Alpha-Fetoprotein by in silico Modeling and Point Mutagenesis Nurbubu T. Moldogazieva1*, Daria S. Ostroverkhova1,2, Nikolai N. Kuzmich1,3, Vladimir V. Kadochnikov4, Alexander A. Terentiev5, Yuri B. Porozov1,4 1 Laboratory of Bioinformatics, I.M. Sechenov First Moscow State Medical University (Sechenov University); Moscow, Russia; 2Department of Bioengineering, M.V. Lomonosov Moscow State University; Moscow, Russia; 3Department of Drug Safety, I.M. Smorodintsev Research Institute of Influenza, WHO National Influenza Centre of Russia; Saint Petersburg, Russia 4Department of Information and Communication Technologies, Saint Petersburg National Research University of Information Technologies, Mechanics and Optics; Saint Petersburg, Russia 5Deparment of Biochemistry and Molecular Biology, N.I. Pirogov Russian National Research Medical University; Moscow Russia *Corresponding author: Nurbubu T. Moldogazieva, e-mail:
[email protected] (NM) ¶ These authors contributed equally to this work Short title: Binding of ERα ligands to human alpha-fetoprotein Key words: alpha-fetoprotein, estrogens, selective estrogen receptor modulators, homology-based modeling, molecular docking, protein-ligand interaction, amino acid substitutions. Abbreviations: HAFP, human alpha-fetoprotein; HSA, human serum albumin; E2, 17β-estradiol; DES, diethylstilbestrol. Author contribution: Conceptualization, Nurbubu T. Moldogazieva, Alexander A. Terentiev and Yuri B. Porozov; Data curation, Nurbubu T. Moldogazieva; Formal analysis, Nurbubu T. Moldogazieva and Nikolai N. Kuzmich; Investigation, Daria S. Ostroverkhova and Vladimir V. Kadochnikov; Methodology, Nikolai N. Kuzmich; Supervision, Alexander A.