Pelvic Fin Flexibility in Tree Climbing Fish
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Present Status of Fish Biodiversity and Abundance in Shiba River, Bangladesh
Univ. J. zool. Rajshahi. Univ. Vol. 35, 2016, pp. 7-15 ISSN 1023-6104 http://journals.sfu.ca/bd/index.php/UJZRU © Rajshahi University Zoological Society Present status of fish biodiversity and abundance in Shiba river, Bangladesh D.A. Khanom, T Khatun, M.A.S. Jewel*, M.D. Hossain and M.M. Rahman Department of Fisheries, University of Rajshahi, Rajshahi 6205, Bangladesh Abstract: The study was conducted to investigate the abundance and present status of fish biodiversity in the Shiba river at Tanore Upazila of Rajshahi district, Bangladesh. The study was conducted from November, 2016 to February, 2017. A total of 30 species of fishes were recorded belonging to nine orders, 15 families and 26 genera. Cypriniformes and Siluriformes were the most diversified groups in terms of species. Among 30 species, nine species under the order Cypriniformes, nine species of Siluriformes, five species of Perciformes, two species of Channiformes, two species of Mastacembeliformes, one species of Beloniformes, one species of Clupeiformes, one species of Osteoglossiformes and one species of Decapoda, Crustacea were found. Machrobrachium lamarrei of the family Palaemonidae under Decapoda order was the most dominant species contributing 26.29% of the total catch. In the Shiba river only 6.65% threatened fish species were found, and among them 1.57% were endangered and 4.96% were vulnerable. The mean values of Shannon-Weaver diversity (H), Margalef’s richness (D) and Pielou’s (e) evenness were found as 1.86, 2.22 and 0.74, respectively. Relationship between Shannon-Weaver diversity index (H) and pollution indicates the river as light to moderate polluted. -
BONY FISHES 602 Bony Fishes
click for previous page BONY FISHES 602 Bony Fishes GENERAL REMARKS by K.E. Carpenter, Old Dominion University, Virginia, USA ony fishes constitute the bulk, by far, of both the diversity and total landings of marine organisms encoun- Btered in fisheries of the Western Central Atlantic.They are found in all macrofaunal marine and estuarine habitats and exhibit a lavish array of adaptations to these environments. This extreme diversity of form and taxa presents an exceptional challenge for identification. There are 30 orders and 269 families of bony fishes presented in this guide, representing all families known from the area. Each order and family presents a unique suite of taxonomic problems and relevant characters. The purpose of this preliminary section on technical terms and guide to orders and families is to serve as an introduction and initial identification guide to this taxonomic diversity. It should also serve as a general reference for those features most commonly used in identification of bony fishes throughout the remaining volumes. However, I cannot begin to introduce the many facets of fish biology relevant to understanding the diversity of fishes in a few pages. For this, the reader is directed to one of the several general texts on fish biology such as the ones by Bond (1996), Moyle and Cech (1996), and Helfman et al.(1997) listed below. A general introduction to the fisheries of bony fishes in this region is given in the introduction to these volumes. Taxonomic details relevant to a specific family are explained under each of the appropriate family sections. The classification of bony fishes continues to transform as our knowledge of their evolutionary relationships improves. -
Amblyopsidae, Amblyopsis)
A peer-reviewed open-access journal ZooKeys 412:The 41–57 Hoosier(2014) cavefish, a new and endangered species( Amblyopsidae, Amblyopsis)... 41 doi: 10.3897/zookeys.412.7245 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research The Hoosier cavefish, a new and endangered species (Amblyopsidae, Amblyopsis) from the caves of southern Indiana Prosanta Chakrabarty1,†, Jacques A. Prejean1,‡, Matthew L. Niemiller1,2,§ 1 Museum of Natural Science, Ichthyology Section, 119 Foster Hall, Department of Biological Sciences, Loui- siana State University, Baton Rouge, Louisiana 70803, USA 2 University of Kentucky, Department of Biology, 200 Thomas Hunt Morgan Building, Lexington, KY 40506, USA † http://zoobank.org/0983DBAB-2F7E-477E-9138-63CED74455D3 ‡ http://zoobank.org/C71C7313-142D-4A34-AA9F-16F6757F15D1 § http://zoobank.org/8A0C3B1F-7D0A-4801-8299-D03B6C22AD34 Corresponding author: Prosanta Chakrabarty ([email protected]) Academic editor: C. Baldwin | Received 12 February 2014 | Accepted 13 May 2014 | Published 29 May 2014 http://zoobank.org/C618D622-395E-4FB7-B2DE-16C65053762F Citation: Chakrabarty P, Prejean JA, Niemiller ML (2014) The Hoosier cavefish, a new and endangered species (Amblyopsidae, Amblyopsis) from the caves of southern Indiana. ZooKeys 412: 41–57. doi: 10.3897/zookeys.412.7245 Abstract We describe a new species of amblyopsid cavefish (Percopsiformes: Amblyopsidae) in the genus Amblyopsis from subterranean habitats of southern Indiana, USA. The Hoosier Cavefish, Amblyopsis hoosieri sp. n., is distinguished from A. spelaea, its only congener, based on genetic, geographic, and morphological evi- dence. Several morphological features distinguish the new species, including a much plumper, Bibendum- like wrinkled body with rounded fins, and the absence of a premature stop codon in the gene rhodopsin. -
FOOD and the FEEDING ECOLOGY of the MUDSKIPPERS (Periopthalmus Koelreutes (PALLAS) GOBODAC at RUMUOLUMENI CREEK, NIGER DELTA
AGRICULTURE AND BIOLOGY JOURNAL OF NORTH AMERICA ISSN Print: 2151-7517, ISSN Online: 2151-7525, doi:10.5251/abjna.2011.2.6.897.901 © 2011, ScienceHuβ, http://www.scihub.org/ABJNA Food and feeding ecology of the MUDSKIPPER Periopthalmus koelreuteri (PALLAS) Gobiidae at Rumuolumeni Creek, Niger Delta, Nigeria F.G. Bob-Manuel Rivers State University of Education, Rumuolumeni, P. M. B. 5047, Port Harcourt, Nigeria ABSTRACT The food habits of the mudskipper Periophthalmus keolreuteri (Pallas) from the mudflats at Rumuolumeni Creek, Niger Delta, Nigeria were studied. The frequency of occurrence and ‘point’ methods was used for the gut content analysis. The results indicate that the juveniles were herbivorous feeding more on aquatic macrophytes, diatoms and algal filaments while the adults had a dietary shift towards crustaceans, aquatic and terrestrial insects and polychaetes. The amphibious lifestyle of the mudskipper confers on it the trophic position of a zoobenthivore and a predator. Keywords: diet composition, mudskippers, food web, trophic relations, Niger Delta. INTRODUCTION catch bigger fishes. The rich food supplies in the mangrove mud flat have been the impetus which led The mudskippers Periophthalmus koelreuteri the goby-like ancestors of modern mudskippers to (Gobiidae: Oxudercinae) live in the intertidal habitat leave the water from time to time. (Evans et al., 1999) of the mudflats and in mangrove ecosystem (Murdy, The mudskippers can move rapidly on the mud, 1989). These fishes are uniquely adapted to a which is inaccessible to people. completely amphibious lifestyle (Graham, 1997). They are quite active when out of water, feeding and The mudskipper, P. koelreuteri is a residential fish interacting with one another and defending their inhabiting the mudflats of the Niger Delta estuaries, territories. -
Ecology, Biology and Taxonomy. Mudskippers
Chapter of the edited collection: Mangroves: Ecology, Biology and Taxonomy. Mudskippers: human use, ecotoxicology and biomonitoring of mangrove and other soft bottom intertidal ecosystems. Gianluca Polgar 1 and Richard Lim 2 1Institute of Biological Sciences, Institute of Ocean and Earth Sciences, Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia. Tel. +603-7967-4609 / 4182; e-mail: [email protected] / [email protected]. Web site: www.themudskipper.org 2Centre for Environmental Sustainability, School of the Environment, Faculty of Science, University of Technology Sydney, Broadway, New South Wales 2007, Australia. e-mail: [email protected] Abstract (269) Mudskippers (Gobiidae: Oxudercinae) are air-breathing gobies, which are widely distributed throughout the West African coast and the Indo-Pacific region. They are closely linked to mangrove and adjacent soft bottom peri-tidal ecosystems. Some species are amongst the best adapted fishes to an amphibious lifestyle. All mudskippers are benthic burrowers in anoxic sediments, and since tidal mudflats are efficient sediment traps, and sinks for nutrients and other chemical compounds, they are constantly in contact with several types of pollutants produced by industrial, agricultural and domestic activities. Due to their natural abundance, considerable resistance to highly polluted conditions, and their benthic habits, mudskippers are frequently used in aquatic ecotoxicological studies. For the same reasons, mudskippers also frequently occur in urbanised or semi-natural coastal areas. Since several species are widely consumed throughout their whole geographical range, these same characteristics also facilitate their aquaculture in several countries, such as Bangladesh, Thailand, Philippines, China, Taiwan and Japan. Even when not directly used, mudskippers are often abundant and are important prey items for many intertidal transient species (marine visitors), and several species of shorebirds. -
Batoid Locomotion: Effects of Speed on Pectoral Fin Deformation in the Little Skate, Leucoraja Erinacea Valentina Di Santo1,*, Erin L
© 2017. Published by The Company of Biologists Ltd | Journal of Experimental Biology (2017) 220, 705-712 doi:10.1242/jeb.148767 RESEARCH ARTICLE Batoid locomotion: effects of speed on pectoral fin deformation in the little skate, Leucoraja erinacea Valentina Di Santo1,*, Erin L. Blevins1,2 and George V. Lauder1 ABSTRACT more efficient at higher speeds and for long-distance translocations Most batoids have a unique swimming mode in which thrust is (Di Santo and Kenaley, 2016). Although many batoid species are generated by either oscillating or undulating expanded pectoral fins accurately described by these two extreme modes, several species that form a disc. Only one previous study of the freshwater stingray has fall into a continuum between 0.5 and 1.0 wave, and are defined as quantified three-dimensional motions of the wing, and no comparable ‘semi-oscillators’ (Schaefer and Summers, 2005). data are available for marine batoid species that may differ The mechanics of propulsion in cartilaginous fishes have been considerably in their mode of locomotion. Here, we investigate three- investigated over the years through studies of morphology, dimensional kinematics of the pectoral wing of the little skate, kinematics, hydrodynamics, muscle activity and energetics Leucoraja erinacea, swimming steadily at two speeds [1 and (Daniel, 1988; Di Santo and Kenaley, 2016; Donley and 2 body lengths (BL) s−1]. We measured the motion of nine points in Shadwick, 2003; Fontanella et al., 2013; Lauder, 2015; Lauder three dimensions during wing oscillation and determined that there are and Di Santo, 2015; Porter et al., 2011; Rosenberger and Westneat, significant differences in movement amplitude among wing locations, 1999; Rosenblum et al., 2011). -
ORGANIZATION of BIOMOLECULES in a 3-DIMENSIONAL SPACE by Sameer Sajja a Thesis Submitted to the Faculty of the University Of
ORGANIZATION OF BIOMOLECULES IN A 3-DIMENSIONAL SPACE by Sameer Sajja A thesis submitted to the faculty of The University of North Carolina at Charlotte in partial fulfillment of the requirements for the degree of Master of Science in Chemistry Charlotte 2019 Approved by: ________________________________ Dr. Kirill Afonin ________________________________ Dr. Caryn Striplin ________________________________ Dr. Joanna Krueger ________________________________ Dr. Yuri Nesmelov ii ©2019 Sameer Sajja ALL RIGHTS RESERVED iii ABSTRACT SAMEER SAJJA. Organization of Biomolecules in a 3-Dimensional Space (Under the direction of DR. KIRILL A. AFONIN) The human body operates using various stimuli-responsive mechanisms, dictating biological activity via reaction to external cues. Hydrogels are networked hydrophilic polymeric materials that offer the potential to recreate aqueous environments with controlled organization of biomolecules for research purposes and potential therapeutic use. The unique, programmable structure of hydrogels exhibit similar physicochemical properties to those of living tissues while also introducing component-mediated biocompatibility. The design of stimuli-responsive biocompatible hydrogels would further allow for controllable mechanical and functional properties tuned by changes in environmental factors. This study investigates individual biomolecular components needed to potentially engineer biocompatible and stimuli-responsive hydrogels. By utilizing programmable biomolecules such as nucleic acids (DNA and RNA) and proteins -
Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development
processes Review Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development Outi M. H. Salo-Ahen 1,2,* , Ida Alanko 1,2, Rajendra Bhadane 1,2 , Alexandre M. J. J. Bonvin 3,* , Rodrigo Vargas Honorato 3, Shakhawath Hossain 4 , André H. Juffer 5 , Aleksei Kabedev 4, Maija Lahtela-Kakkonen 6, Anders Støttrup Larsen 7, Eveline Lescrinier 8 , Parthiban Marimuthu 1,2 , Muhammad Usman Mirza 8 , Ghulam Mustafa 9, Ariane Nunes-Alves 10,11,* , Tatu Pantsar 6,12, Atefeh Saadabadi 1,2 , Kalaimathy Singaravelu 13 and Michiel Vanmeert 8 1 Pharmaceutical Sciences Laboratory (Pharmacy), Åbo Akademi University, Tykistökatu 6 A, Biocity, FI-20520 Turku, Finland; ida.alanko@abo.fi (I.A.); rajendra.bhadane@abo.fi (R.B.); parthiban.marimuthu@abo.fi (P.M.); atefeh.saadabadi@abo.fi (A.S.) 2 Structural Bioinformatics Laboratory (Biochemistry), Åbo Akademi University, Tykistökatu 6 A, Biocity, FI-20520 Turku, Finland 3 Faculty of Science-Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, 3584 CH Utrecht, The Netherlands; [email protected] 4 Swedish Drug Delivery Forum (SDDF), Department of Pharmacy, Uppsala Biomedical Center, Uppsala University, 751 23 Uppsala, Sweden; [email protected] (S.H.); [email protected] (A.K.) 5 Biocenter Oulu & Faculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 7 A, FI-90014 Oulu, Finland; andre.juffer@oulu.fi 6 School of Pharmacy, University of Eastern Finland, FI-70210 Kuopio, Finland; maija.lahtela-kakkonen@uef.fi (M.L.-K.); tatu.pantsar@uef.fi -
Determination of Age and Growth of the Mudskipper Periophthalmus
Progress in Biological Sciences Vol. 1, No.1, 25-30, Winter/Spring 2011 Determination of age and growth of the mudskipper Periophthalmus waltoni Koumans, 1955 (Actinopterygii: Perciformes) on the mudflats of Qeshm Island and Bandar-Abbas, Iran Jaleh Sarafraz1, Asghar Abdoli2*, Bahram Hassanzadeh Kiabi1, Ehsan Kamrani3, and Mohamad Ali Akbarian1 1 Faculty of Biological Sciences, Shahid Beheshti University, G.C, Tehran, Iran 2 Department of Biodiversity and Ecosystem Management, Environmental Sciences Research Institute, Shahid Beheshti University, G.C, Tehran, Iran 3 Department of Marine Biology, Faculty of Science, University of Hormozgan, Bandar-Abbas, Iran In order to determine the age structure, growth, and length-weight relationship of the mudskipper, Periophthalmus waltoni, from coastal mudflats of Qeshm Island, Soroo and Bandar-pol, in Hor- muzgan Province, Iran, we collected 192 individuals in February 2007. Age was determined using the second pectoral radial bone and year class was based on length-frequency distributions. Growth was described by the von Bertalanffy growth model. For Bandar-Pol mudskippers, = -1 141.51 mm, k = 0.46 year , and t0 = 0.79 year. For Qeshm mudskippers, = 166.79 mm, k = 0.42 -1 year , and t0 = 0.62 year. Overall, males grew larger than females ( = 208 mm vs. 147 mm), -1 while females grew faster (k = 0.41 vs. 0.19 year ). The age when the theoretical length was 0 (t0) was 1.46 year for males and 0.88 for females. Maximum age was estimated to be 4+ years. Total length for all specimens ranged from 69 to 154 mm, and for individuals of the same age, males were larger than females. -
Density and Length-Weight Relationship of Mudskipper (Periophthalmus Spp.) in the Mangrove Area of Kairatu Beach, Maluku, Indonesia
BIODIVERSITAS ISSN: 1412-033X Volume 21, Number 11, November 2020 E-ISSN: 2085-4722 Pages: 5465-5473 DOI: 10.13057/biodiv/d211155 Short Communication: Density and length-weight relationship of mudskipper (Periophthalmus spp.) in the mangrove area of Kairatu Beach, Maluku, Indonesia DIANA TANIWEL1,♥, FREDY LEIWAKABESSY2, DOMINGGUS RUMAHLATU2,♥♥ 1Graduate Program of Biology Education, Universitas Pattimura. Jl. Dr. Tamaela, Ambon 97116, Maluku, Indonesia. Tel./fax.: +62-911-311803, ♥email: [email protected] 2Program of Biology Education, Faculty of Teacher Training and Education, Universitas Pattimura. Jl. Ir. M. Putuhena, Ambon 97233, Maluku, Indonesia. Tel./fax.: +62-911-3825216, ♥♥email: [email protected] Manuscript received: 29 August 2020. Revision accepted: 27 October 2020. Abstract. Taniwel D, Leiwakabessy F, Rumahlatu D. 2020. Short Communication: Density and length-weight relationship of mudskipper (Periophthalmus spp.) in the mangrove area of Kairatu Beach, Maluku, Indonesia. Biodiversitas 21: 5465-5473. Mudskippers (genus Periophthalmus) fish species inhabit mudflat, sandy beaches, and mangrove areas. Their daily activities are influenced by tidal rhythms. The aim of this research was to identify the species of mudskipper, their density, and length-weight relationship of more density species in the mangrove area of Kairatu beach, Maluku, Indonesia. This research was conducted from July to August 2018, 3 sampling sites using purposive sampling technique. The physical-chemical parameters of environmental conditions (temperature, dissolved oxygen, salinity, and pH of water) were measured directly on location (in-situ), while the different mudskippers species present in the study sites were identified in the laboratory at the Pattimura University. Quantitative data on population density and length and weight of individuals were obtained for four Periophthalmus species. -
Maestro 10.2 User Manual
Maestro User Manual Maestro 10.2 User Manual Schrödinger Press Maestro User Manual Copyright © 2015 Schrödinger, LLC. All rights reserved. While care has been taken in the preparation of this publication, Schrödinger assumes no responsibility for errors or omissions, or for damages resulting from the use of the information contained herein. Canvas, CombiGlide, ConfGen, Epik, Glide, Impact, Jaguar, Liaison, LigPrep, Maestro, Phase, Prime, PrimeX, QikProp, QikFit, QikSim, QSite, SiteMap, Strike, and WaterMap are trademarks of Schrödinger, LLC. Schrödinger, BioLuminate, and MacroModel are registered trademarks of Schrödinger, LLC. MCPRO is a trademark of William L. Jorgensen. DESMOND is a trademark of D. E. Shaw Research, LLC. Desmond is used with the permission of D. E. Shaw Research. All rights reserved. This publication may contain the trademarks of other companies. Schrödinger software includes software and libraries provided by third parties. For details of the copyrights, and terms and conditions associated with such included third party software, use your browser to open third_party_legal.html, which is in the docs folder of your Schrödinger software installation. This publication may refer to other third party software not included in or with Schrödinger software ("such other third party software"), and provide links to third party Web sites ("linked sites"). References to such other third party software or linked sites do not constitute an endorsement by Schrödinger, LLC or its affiliates. Use of such other third party software and linked sites may be subject to third party license agreements and fees. Schrödinger, LLC and its affiliates have no responsibility or liability, directly or indirectly, for such other third party software and linked sites, or for damage resulting from the use thereof. -
Kepler Gpus and NVIDIA's Life and Material Science
LIFE AND MATERIAL SCIENCES Mark Berger; [email protected] Founded 1993 Invented GPU 1999 – Computer Graphics Visual Computing, Supercomputing, Cloud & Mobile Computing NVIDIA - Core Technologies and Brands GPU Mobile Cloud ® ® GeForce Tegra GRID Quadro® , Tesla® Accelerated Computing Multi-core plus Many-cores GPU Accelerator CPU Optimized for Many Optimized for Parallel Tasks Serial Tasks 3-10X+ Comp Thruput 7X Memory Bandwidth 5x Energy Efficiency How GPU Acceleration Works Application Code Compute-Intensive Functions Rest of Sequential 5% of Code CPU Code GPU CPU + GPUs : Two Year Heart Beat 32 Volta Stacked DRAM 16 Maxwell Unified Virtual Memory 8 Kepler Dynamic Parallelism 4 Fermi 2 FP64 DP GFLOPS GFLOPS per DP Watt 1 Tesla 0.5 CUDA 2008 2010 2012 2014 Kepler Features Make GPU Coding Easier Hyper-Q Dynamic Parallelism Speedup Legacy MPI Apps Less Back-Forth, Simpler Code FERMI 1 Work Queue CPU Fermi GPU CPU Kepler GPU KEPLER 32 Concurrent Work Queues Developer Momentum Continues to Grow 100M 430M CUDA –Capable GPUs CUDA-Capable GPUs 150K 1.6M CUDA Downloads CUDA Downloads 1 50 Supercomputer Supercomputers 60 640 University Courses University Courses 4,000 37,000 Academic Papers Academic Papers 2008 2013 Explosive Growth of GPU Accelerated Apps # of Apps Top Scientific Apps 200 61% Increase Molecular AMBER LAMMPS CHARMM NAMD Dynamics GROMACS DL_POLY 150 Quantum QMCPACK Gaussian 40% Increase Quantum Espresso NWChem Chemistry GAMESS-US VASP CAM-SE 100 Climate & COSMO NIM GEOS-5 Weather WRF Chroma GTS 50 Physics Denovo ENZO GTC MILC ANSYS Mechanical ANSYS Fluent 0 CAE MSC Nastran OpenFOAM 2010 2011 2012 SIMULIA Abaqus LS-DYNA Accelerated, In Development NVIDIA GPU Life Science Focus Molecular Dynamics: All codes are available AMBER, CHARMM, DESMOND, DL_POLY, GROMACS, LAMMPS, NAMD Great multi-GPU performance GPU codes: ACEMD, HOOMD-Blue Focus: scaling to large numbers of GPUs Quantum Chemistry: key codes ported or optimizing Active GPU acceleration projects: VASP, NWChem, Gaussian, GAMESS, ABINIT, Quantum Espresso, BigDFT, CP2K, GPAW, etc.