With Two New Species of Shrub from the Forests of the Udzungwas, Tanzania & Kaya
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Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
ORIGINAL RESEARCH published: 09 January 2019 doi: 10.3389/fpls.2018.01941 Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes Thomas L. P. Couvreur 1*†, Andrew J. Helmstetter 1†, Erik J. M. Koenen 2, Kevin Bethune 1, Rita D. Brandão 3, Stefan A. Little 4, Hervé Sauquet 4,5 and Roy H. J. Erkens 3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France, 2 Institute of Systematic Botany, University of Zurich, Zurich, Switzerland, 3 Maastricht Science Programme, Maastricht University, Maastricht, Netherlands, 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, Orsay, France, 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, NSW, Australia Edited by: Jim Leebens-Mack, University of Georgia, United States Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic Reviewed by: reconstruction is becoming an important tool for plant systematics and evolution. Eric Wade Linton, Central Michigan University, Annonaceae is a major pantropical plant family with 110 genera and ca. 2,450 species, United States occurring across all major and minor tropical forests of the world. Baits were designed Mario Fernández-Mazuecos, by sequencing the transcriptomes of five species from two of the largest Annonaceae Real Jardín Botánico (RJB), Spain Angelica Cibrian-Jaramillo, subfamilies. Orthologous loci were identified. The resulting baiting kit was used to Centro de Investigación y de Estudios reconstruct phylogenetic relationships at two different levels using concatenated and Avanzados (CINVESTAV), Mexico gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and *Correspondence: Thomas L. P. -
Zanzibar Inhambane Vegetation
Plant Formations in the Zanzibar-Inhambane BioProvince Peter Martin Rhind Zanzibar-Inhambane Deciduous Forest Dry deciduous forests occur scattered along the entire length of Mozambique north of Massinga. They are characterized by trees such as Adansonia digitata, Afzelia quanzensis, Balanites maughamii, Chlorophora excelsa, Cordyla africana, Khaya nyasica, Millettia stuhlmannii, Pteleopsis myrtifolia, Sterculia appendiculata and the endemic Dialium mossambicense (Fabaceae), Fernandoa magnifica (Bignoniaceae) and Inhambanella henriquesii (Sapotaceae). Other endemic trees include Acacia robusta subsp. usambarensis, (Fabaceae), Cassipourea mossambicensis (Rhizophoraceae), Dolichandrona alba (Bignoniaceae), Grewia conocarpa (Tiliaceae) and Pleioceras orientala (Apocynaceae). The sub-canopy is usually well developed and often forms a thick almost impenetrable layer of deciduous and semi-deciduous shrubs including the endemic Salacia orientalis (Celastraceae). There is a form of semi-deciduous forest mainly confined to the sublittoral belt of ancient dunes, but its floristic composition varies considerable. Some of the more characteristic species include Celtis africana, Dialium schlechteri, Morus mesozygia, Trachylobium verrucosum and the endemic or near endemic Cola mossambicensis (Sterculiaceae) and Pseudobersama mossambicensis (Meliaceae). Zanzibar-Inhambane Miombo Woodland This, the most extensive type of woodland in the BioProvince, is represented by a floristically impoverished version of Miomba dominated by various species of Brachystegia -
Evolution of Angiosperm Pollen. 7. Nitrogen-Fixing Clade1
Evolution of Angiosperm Pollen. 7. Nitrogen-Fixing Clade1 Authors: Jiang, Wei, He, Hua-Jie, Lu, Lu, Burgess, Kevin S., Wang, Hong, et. al. Source: Annals of the Missouri Botanical Garden, 104(2) : 171-229 Published By: Missouri Botanical Garden Press URL: https://doi.org/10.3417/2019337 BioOne Complete (complete.BioOne.org) is a full-text database of 200 subscribed and open-access titles in the biological, ecological, and environmental sciences published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Complete website, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/terms-of-use. Usage of BioOne Complete content is strictly limited to personal, educational, and non - commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Downloaded From: https://bioone.org/journals/Annals-of-the-Missouri-Botanical-Garden on 01 Apr 2020 Terms of Use: https://bioone.org/terms-of-use Access provided by Kunming Institute of Botany, CAS Volume 104 Annals Number 2 of the R 2019 Missouri Botanical Garden EVOLUTION OF ANGIOSPERM Wei Jiang,2,3,7 Hua-Jie He,4,7 Lu Lu,2,5 POLLEN. 7. NITROGEN-FIXING Kevin S. Burgess,6 Hong Wang,2* and 2,4 CLADE1 De-Zhu Li * ABSTRACT Nitrogen-fixing symbiosis in root nodules is known in only 10 families, which are distributed among a clade of four orders and delimited as the nitrogen-fixing clade. -
Segoma Forest Reserve: a Biodiversity Survey. East Usambara Conservation Area Management Programme Technical Paper No
TECHNICAL PAPER 50 Segoma Forest Reserve A biodiversity survey Frontier Tanzania 2001 East Usambara Conservation Area Management Programme Technical Paper 50 Segoma Forest Reserve A biodiversity survey Doody, K. Z., Howell, K. M. and Fanning, E. (eds.) Ministry of Natural Resources and Tourism, Tanzania Forestry and Beekeeping Division Department of International Frontier-Tanzania Development Co-operation, Finland University of Dar es Salaam Metsähallitus Consulting Society for Environmental Exploration Tanga 2001 © Metsähallitus - Forest and Park Service Cover painting: Jaffary Aussi (1995) ISSN 1236-630X ISBN 9987-646-06-9 Suggested citation: Frontier Tanzania 2001. Doody, K. Z., Howell, K. M., and Fanning, E., (eds.). Segoma Forest Reserve: A biodiversity survey. East Usambara Conservation Area Management Programme Technical Paper No. 50. Frontier Tanzania, Forestry and Beekeeping Division & Metsähallitus Consulting , Dar es Salaam & Vantaa, Finland. East Usambara Conservation Area Management Programme (EUCAMP) The East Usambara rain forests are one of the most valuable conservation areas in Africa, several plant and animal species are found only in the East Usambara mountains. The rain forests secure the water supply of 200,000 people and the local people in the mountains depend on these forests. The East Usambara Conservation Area Management Programme has established the Amani Nature Reserve, and aims at protecting water sources; establishing and protecting forest reserves; sustaining villager’s benefits from the forest; and rehabilitating the Amani Botanical Garden. The Forestry and Beekeeping Division of the Ministry of Natural Resources and Tourism implement the programme with financial support from the Government of Finland, and implementation support from the Metsahallitus Consulting . To monitor the impact of the project, both baseline biodiversity assessments and development of a monitoring system are needed. -
Mothers, Markets and Medicine Hanna Lindh
Mothers, markets and medicine The role of traditional herbal medicine in primary women and child health care in the Dar es Salaam region, Tanzania Hanna Lindh Degree project in biology, Bachelor of science, 2015 Examensarbete i biologi 15 hp till kandidatexamen, 2015 Biology Education Centre, Uppsala University Supervisors: Sarina Veldman and Hugo de Boer 1 Abstract Traditional medicine is still the most common primary healthcare used in Tanzania, especially among women. The ethnobotanical studies performed in Tanzania have not explored women’s traditional medicine, with the result that we do not know that much about it, including if women’s usage of medicinal plants create a threat against the medicinal flora’s biodiversity or not. Field studies consisting of interviews and collections of medicinal plants were carried out in the Dar es Salaam region in Tanzania before identifying the collected specimens by DNA barcoding, literature and morphology in Uppsala, Sweden. The 33 informants belonged to 15 different ethnic groups and 79% of them had migrated to Dar es Salaam. A total of 249 plant species were mentioned for women’s healthcare and 140 for children’s healthcare. The medicinal plants frequently reported as used for women’s health and childcare during structured interviews and free-listing exercises were Senna occidentalis/ Cassia abbreviata, Zanthoxylum sp., Clausena anisata, Acalypha ornata and Ximenia sp. The most salient uses of medicinal plants by women were during pregnancy, childbirth, menstruation, to induce abortion, and for cleansing infants and treating convulsions in children. Most of the fresh specimens were collected from disturbance vegetation. The informants having most interview answers in common were the market vendors, healers and herbalists and they were the only informants that mentioned species listed as vulnerable on the IUCN Red List of Threatened Species. -
Tree Composition and Ecological Structure of Akak Forest Area
Environment and Natural Resources Research; Vol. 9, No. 4; 2019 ISSN 1927-0488 E-ISSN 1927-0496 Published by Canadian Center of Science and Education Tree Composition and Ecological Structure of Akak Forest Area Agbor James Ayamba1,2, Nkwatoh Athanasius Fuashi1, & Ayuk Elizabeth Orock1 1 Department of Environmental Science, University of Buea, Cameroon 2 Ajemalebu Self Help, Kumba, South West Region, Cameroon Correspondence: Agbor James Ayamba, Department of Environmental Science, University of Buea, Cameroon. Tel: 237-652-079-481. E-mail: [email protected] Received: August 2, 2019 Accepted: September 11, 2019 Online Published: October 12, 2019 doi:10.5539/enrr.v9n4p23 URL: https://doi.org/10.5539/enrr.v9n4p23 Abstract Tree composition and ecological structure were assessed in Akak forest area with the objective of assessing the floristic composition and the regeneration potentials. The study was carried out between April 2018 to February 2019. A total of 49 logged stumps were selected within the Akak forest spanning a period of 5 years and 20m x 20m transects were demarcated. All plants species <1cm and above were identified and recorded. Results revealed that a total of 5239 individuals from 71 families, 216 genera and 384species were identified in the study area. The maximum plants species was recorded in the year 2015 (376 species). The maximum number of species and regeneration potentials was found in the family Fabaceae, (99 species) and (31) respectively. Baphia nitida, Musanga cecropioides and Angylocalyx pynaertii were the most dominant plants specie in the years 2013, 2015 and 2017 respectively. The year 2017 depicts the highest Simpson diversity with value of (0.989) while the year 2015 show the highest Simpson dominance with value of (0.013). -
Essential Oils and Health
YALE JOURNAL OF BIOLOGY AND MEDICINE 93 (2020), pp.291-305. Review Essential Oils and Health J. Tyler Ramseya,*, B. Carrie Shropshirea, Tibor R. Nagya, Kevin D. Chambersa, Yin Lib, and Kenneth S. Korachb,* aCampbell University School of Osteopathic Medicine, Lillington, NC; bReproductive and Developmental Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC Essential oils (EOs) have risen in popularity over the past decade. These oils function in society as holistic integrative modalities to traditional medicinal treatments, where many Americans substitute EOs in place of other prescribed medications. EOs are found in a multitude of products including food flavoring, soaps, lotions, shampoos, hair styling products, cologne, laundry detergents, and even insect repellents. EOs are complex substances comprised of hundreds of components that can vary greatly in their composition depending upon the extraction process by the producer or the origin of the plant. Thus, making it difficult to determine which pathways in the body are affected. Here, we review the published research that shows the health benefits of EOs as well as some of their adverse effects. In doing so, we show that EOs, as well as some of their individual components, possess antimicrobial, antiviral, antibiotic, anti-inflammatory, and antioxidant properties as well as purported psychogenic effects such as relieving stress, treating depression, and aiding with insomnia. Not only do we show the health benefits of using EOs, but we also indicate risks associated with their use such as their endocrine disrupting properties leading to the induction of premature breast growth in young adolescents. -
Ecological Report on Magombera Forest
Ecological Report on Magombera Forest Andrew R. Marshall (COMMISSIONED BY WORLD WIDE FUND FOR NATURE TANZANIA PROGRAMME OFFICE) Feb 2008 2 Contents Abbreviations and Acronyms 3 Acknowledgements 4 Executive Summary 5 Background 5 Aim and Objectives 5 Findings 6 Recommendations 7 Introduction 9 Tropical Forests 9 Magombera Location and Habitat 9 Previous Ecological Surveys 10 Management and Conservation History 11 Importance of Monitoring 14 Aim and Objectives 15 Methods 15 Threats 17 Forest Structure 17 Key Species 18 Forest Restoration 20 Results and Discussion 21 Threats 21 Forest Structure 25 Key Species 26 Forest Restoration 36 Recommendations 37 Immediate Priorities 38 Short-Term Priorities 40 Long-Term Priorities 41 References 44 Appendices 49 Appendix 1. Ministry letter of support for the increased conservation of Magombera forest 49 Appendix 2. Datasheets 50 Appendix 3. List of large trees in Magombera Forest plots 55 Appendix 4. Slides used to present ecological findings to villages 58 Appendix 5. Photographs from village workshops 64 3 Abbreviations and Acronyms CEPF Critical Ecosystem Partnership Fund CITES Convention on the International Trade in Endangered Species IUCN International Union for the Conservation of Nature and Natural Resources TAZARA Tanzania-Zambia Railroad UFP Udzungwa Forest Project UMNP Udzungwa Mountains National Park WWF-TPO Worldwide Fund for Nature – Tanzania Programme Office 4 Acknowledgements Thanks to all of the following individuals and institutions: - CEPF for 2007 funds for fieldwork and report -
Araceae), with P
Taxonomic revision of the threatened African genus Pseudohydrosme Engl. (Araceae), with P. ebo, a new, critically endangered species from Ebo, Cameroon Martin Cheek1, Barthélemy Tchiengué2 and Xander van der Burgt3 1 Royal Botanic Gardens, Kew, Richmond, UK 2 Institute of Agronomic Research and Development, Herbier National Camerounais, Yaoundé, Centrale, Cameroon 3 Identification & Naming, Royal Botanic Gardens, Kew, Richmond, Surrey, UK ABSTRACT This is the first revision in more than 100 years of the African genus Pseudohydrosme, formerly considered endemic to Gabon. Closely related to Anchomanes, Pseudohydrosme is distinct from Anchomanes because of its 2-3-locular ovary (vs. unilocular), peduncle concealed by cataphylls at anthesis and far shorter than the spathe (vs. exposed, far exceeding the spathe), stipitate fruits and viviparous (asexually reproductive) roots (vs. sessile, roots non-viviparous), lack of laticifers (vs. laticifers present) and differences in spadix: spathe proportions and presentation. However, it is possible that a well sampled molecular phylogenetic analysis might show that one of these genera is nested inside the other. In this case the synonymisation of Pseudohydrosme will be required. Three species, one new to science, are recognised, in two sections. Although doubt has previously been cast on the value of recognising Pseudohydrosme buettneri, of Gabon, it is here accepted and maintained as a distinct species in the monotypic section, Zyganthera. However, it is considered to be probably globally extinct. Pseudohydrosme gabunensis, type species of the genus, also Gabonese but probably extending to Congo, is maintained in Sect. Pseudohydrosme together with Pseudohydrosme ebo sp.nov. of the Ebo Forest, Submitted 13 October 2020 Littoral Region, Cameroon, the first addition to the genus since the nineteenth Accepted 11 December 2020 century, and which extends the range of the genus 450 km north from Gabon, into 11 February 2021 Published the Cross-Sanaga biogeographic area. -
South Cameroon)
Plant Ecology and Evolution 152 (1): 8–29, 2019 https://doi.org/10.5091/plecevo.2019.1547 CHECKLIST Mine versus Wild: a plant conservation checklist of the rich Iron-Ore Ngovayang Massif Area (South Cameroon) Vincent Droissart1,2,3,8,*, Olivier Lachenaud3,4, Gilles Dauby1,5, Steven Dessein4, Gyslène Kamdem6, Charlemagne Nguembou K.6, Murielle Simo-Droissart6, Tariq Stévart2,3,4, Hermann Taedoumg6,7 & Bonaventure Sonké2,3,6,8 1AMAP Lab, IRD, CIRAD, CNRS, INRA, Université de Montpellier, Montpellier, France 2Missouri Botanical Garden, Africa and Madagascar Department, P.O. Box 299, St. Louis, Missouri 63166-0299, U.S.A. 3Herbarium et Bibliothèque de Botanique africaine, C.P. 265, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du Triomphe, BE-1050 Brussels, Belgium 4Meise Botanic Garden, Domein van Bouchout, Nieuwelaan 38, BE-1860 Meise, Belgium 5Evolutionary Biology and Ecology, Faculté des Sciences, C.P. 160/12, Université Libre de Bruxelles, 50 Avenue F. Roosevelt, BE-1050 Brussels, Belgium 6Plant Systematics and Ecology Laboratory, Higher Teachers’ Training College, University of Yaoundé I, P.O. Box 047, Yaoundé, Cameroon 7Bioversity International, P.O. Box 2008 Messa, Yaoundé, Cameroon 8International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, BP1857, Yaoundé, Cameroon *Author for correspondence: [email protected] Background and aims – The rapid expansion of human activities in South Cameroon, particularly mining in mountainous areas, threatens this region’s exceptional biodiversity. To comprehend the effects of land- use change on plant diversity and identify conservation priorities, we aim at providing a first comprehensive plant checklist of the Ngovayang Massif, focusing on the two richest plant families, Orchidaceae and Rubiaceae. -
Unusual Metabolites from Some Tanzanian Indigenous Plant Species*
Pure Appl. Chem., Vol. 77, No. 11, pp. 1943–1955, 2005. DOI: 10.1351/pac200577111943 © 2005 IUPAC Unusual metabolites from some Tanzanian indigenous plant species* Mayunga H. H. Nkunya Department of Chemistry, University of Dar es Salaam, P.O. Box 35061, Dar es Salaam, Tanzania Abstract: In this paper, the chemistry of some unusual natural products that were isolated from various Tanzanian indigenous plant species during the past 20 years is reviewed. Among the compounds covered in this review are cyclohexane epoxides; heptane derivatives; oxygenated pyrenes; phenanthrene derivatives; flavonoids with uncommon structural frame- works; mono-, bis-, and dimeric prenylated indoles; and variously substituted mono-, sesqui-, and diterpenoids. Keywords: Heptane derivatives; cyclohexane epoxides; flavonoids; indoles; phenanthrenes; terpenoids; antimalarial activities; Uvaria species; Annonaceae species. INTRODUCTION Tanzania is endowed with a great abundance of floral diversity, which is estimated to constitute about 10 000 vascular plant species, of which at least 25 % are considered to be indigenous to the country and among them, about 1200 species so far have been reported to occur exclusively in Tanzania [1]. Although some of the plant species are used as herbal remedies and for other applications, not many studies have been carried out to unravel the chemical constituents of some of the Tanzania plant species, particularly those that are considered to be restricted to this country, some of which have been taxo- nomically described only recently [2–6]. Therefore, in 1984, we initiated chemical investigations for novel and/or biologically active natural products from Tanzanian plant species that are either deployed in traditional medicines, used as natural insecticides, rare species, or those that are threatened with ex- tinction due to among others, human developmental activities. -
Character Evolution in Anaxagorea (Annonaceae)
QUT Digital Repository: http://eprints.qut.edu.au/ Scharaschkin, Tanya and Doyle, James A. (2006) Character evolution in Anaxagorea (Annonaceae). American Journal of Botany 93(1):pp. 36-54. © Copyright 2006 Botanical Society of America American Journal of Botany 93(1): 36±54. 2006. CHARACTER EVOLUTION IN ANAXAGOREA (ANNONACEAE)1 TANYA SCHARASCHKIN2,3 AND JAMES A. DOYLE2 2Section of Evolution and Ecology, University of California, Davis, California 95616 USA Anaxagorea is a critical genus for understanding morphological evolution in Annonaceae because it shares a variety of features with other Magnoliales that have been interpreted as primitive relative to other Annonaceae. We present a detailed discussion of morphological characters used in a combined morphological and molecular phylogenetic analysis of Anaxagorea, along with impli- cations of the analysis for character evolution in the genus. In spite of a high level of homoplasy in stamen and leaf venation characters, their removal results in loss of resolution in the trees obtained. The distributions of characters on trees con®rm assumptions that several distinctive similarities between Anaxagorea and other Magnoliales are primitive retentions (e.g., the presence of an adaxial plate of xylem in the midrib, nonpeltate stamen connectives, inner staminodes, and several leaf architectural characters). However, lateral extensions of the ``laminar'' stamens, though possibly ancestral in Anaxagorea, are convergent with those in other Magnoliales. A number of morphological synapomorphies have been identi®ed for a clade containing most Central American species and another comprising all Asian species (e.g., conical bud shape and reduced inner petals for the Central American clade, and adaxial cuticular striations and capitate stigma shape for the Asian clade).