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Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
A New Species of Bondarzewia from India
Turkish Journal of Botany Turk J Bot (2015) 39: 128-133 http://journals.tubitak.gov.tr/botany/ © TÜBİTAK Research Article doi:10.3906/bot-1402-82 A new species of Bondarzewia from India 1, 1 2 Kanad DAS *, Arvind PARIHAR , Manoj Emanuel HEMBROM 1 Botanical Survey of India, Cryptogamic Unit, P. O. B. Garden, Howrah, India 2 Botanical Survey of India, Central National Herbarium, P. O. B. Garden, Howrah, India Received: 25.02.2014 Accepted: 18.07.2014 Published Online: 02.01.2015 Printed: 30.01.2015 Abstract: Bondarzewia zonata, collected from North Sikkim, is proposed here as new to science. It is characterized by basidiomata with strong zonate pilei, thin context turning persistent dark red with guaiacol, comparatively small spores with narrow ornamented ridges, and an absence of cystidioles. A detailed description coupled with macro- and micromorphological illustrations of this species is provided. Its relation to the allied species is discussed and a provisional key to the species of Bondarzewia is given. Key words: Macrofungi, Bondarzewia, Russulales, new species, taxonomy, Sikkim 1. Introduction Picea. After thorough macro- and micromorphological The genusBondarzewia was first described by Singer studies followed by a survey of the literature, it proved to (1940). Presently, it accommodates subtropical (Dai et be new to science. It is proposed as Bondarzewia zonata al., 2010) to temperate and wood-inhabiting parasitic and described here in detail with illustrations. Its relation (causing white rot) poroid macrofungi. Therefore, the with closely related taxa is also discussed. genus Bondarzewia can be characterized as pileate stipitate to substipitate basidiocarps, with a dimitic hyphal system 2. -
Molecular Identification of Fungi
Molecular Identification of Fungi Youssuf Gherbawy l Kerstin Voigt Editors Molecular Identification of Fungi Editors Prof. Dr. Youssuf Gherbawy Dr. Kerstin Voigt South Valley University University of Jena Faculty of Science School of Biology and Pharmacy Department of Botany Institute of Microbiology 83523 Qena, Egypt Neugasse 25 [email protected] 07743 Jena, Germany [email protected] ISBN 978-3-642-05041-1 e-ISBN 978-3-642-05042-8 DOI 10.1007/978-3-642-05042-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2009938949 # Springer-Verlag Berlin Heidelberg 2010 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany, kindly supported by ‘leopardy.com’ Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedicated to Prof. Lajos Ferenczy (1930–2004) microbiologist, mycologist and member of the Hungarian Academy of Sciences, one of the most outstanding Hungarian biologists of the twentieth century Preface Fungi comprise a vast variety of microorganisms and are numerically among the most abundant eukaryotes on Earth’s biosphere. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
<I>Neoalbatrellus Subcaeruleoporus</I>
ISSN (print) 0093-4666 © 2015. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/130.1191 Volume 130, pp. 1191–1202 October–December 2015 Neoalbatrellus subcaeruleoporus sp. nov. (Scutigeraceae) from western North America Serge Audet1* & Brian S. Luther2 11264, Gaillard, Québec, G3J 1J9, Canada 2 PSMS Office, Center for Urban Horticulture, University of Washington, Box 354115, Seattle, Washington 98195, U.S.A. * Corresponding author: [email protected] Abstract –Neoalbatrellus subcaeruleoporus is described as a new species. Its systematic position is supported by molecular and morphological analyses, and a key to the three Neoalbatrellus species is provided. A revised key to American and European species of Scutiger sensu lato (Albatrellopsis, Albatrellus, Laeticutis, Neoalbatrellus, Polypus, Polyporoletus, Polyporopsis, Scutiger s.s., Xanthoporus, and Xeroceps) is appended. Keywords –Albatrellaceae, caeruleoporus, correct family, genetic, Russulales Introduction The genus Neoalbatrellus was proposed by Audet (2010) and is distinguished from Albatrellus by the hymeniderm and the blue, black and brown colors of the basidiomata. Two species have been placed in Neoalbatrellus: N. caeruleoporus and N. yasudae (Audet 2010). Their trophic status is poorly understood and specific ectomycorrhizal host trees have not been confirmed, although N. caeruleoporus is often found underTsuga (Gilbertson & Ryvarden 1986). The presence of extracellular laccase has been reported in basidiomata of N. caeruleoporus (Marr et al. 1986). The closest genus to Neoalbatrellus is Albatrellopsis, based on molecular (ITS) and the dimeric meroterpenoid pigment, grifolinone B (Zhou & Liu 2010). The correct family for these genera is Scutigeraceae Bondartsev & Singer ex Singer 1969, a name that has priority over Albatrellaceae Nuss 1980 (Audet 2010: 439). -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
Phd. Thesis Sana Jabeen.Pdf
ECTOMYCORRHIZAL FUNGAL COMMUNITIES ASSOCIATED WITH HIMALAYAN CEDAR FROM PAKISTAN A dissertation submitted to the University of the Punjab in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in BOTANY by SANA JABEEN DEPARTMENT OF BOTANY UNIVERSITY OF THE PUNJAB LAHORE, PAKISTAN JUNE 2016 TABLE OF CONTENTS CONTENTS PAGE NO. Summary i Dedication iii Acknowledgements iv CHAPTER 1 Introduction 1 CHAPTER 2 Literature review 5 Aims and objectives 11 CHAPTER 3 Materials and methods 12 3.1. Sampling site description 12 3.2. Sampling strategy 14 3.3. Sampling of sporocarps 14 3.4. Sampling and preservation of fruit bodies 14 3.5. Morphological studies of fruit bodies 14 3.6. Sampling of morphotypes 15 3.7. Soil sampling and analysis 15 3.8. Cleaning, morphotyping and storage of ectomycorrhizae 15 3.9. Morphological studies of ectomycorrhizae 16 3.10. Molecular studies 16 3.10.1. DNA extraction 16 3.10.2. Polymerase chain reaction (PCR) 17 3.10.3. Sequence assembly and data mining 18 3.10.4. Multiple alignments and phylogenetic analysis 18 3.11. Climatic data collection 19 3.12. Statistical analysis 19 CHAPTER 4 Results 22 4.1. Characterization of above ground ectomycorrhizal fungi 22 4.2. Identification of ectomycorrhizal host 184 4.3. Characterization of non ectomycorrhizal fruit bodies 186 4.4. Characterization of saprobic fungi found from fruit bodies 188 4.5. Characterization of below ground ectomycorrhizal fungi 189 4.6. Characterization of below ground non ectomycorrhizal fungi 193 4.7. Identification of host taxa from ectomycorrhizal morphotypes 195 4.8. -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes. -
Four Species of Polyporoid Fungi Newly Recorded from Taiwan
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2018 January–March 2018—Volume 133, pp. 45–54 https://doi.org/10.5248/133.45 Four species of polyporoid fungi newly recorded from Taiwan Che-Chih Chen1, Sheng-Hua Wu1,2*, Chi-Yu Chen1 1 Department of Plant Pathology, National Chung Hsing University, Taichung 40227 Taiwan 2 Department of Biology, National Museum of Natural Science, Taichung 40419 Taiwan * Correspondence to: [email protected] Abstract —Four wood-rotting polypores are reported from Taiwan for the first time: Ceriporiopsis pseudogilvescens, Megasporia major, Phlebiopsis castanea, and Trametes maxima. ITS (internal transcribed spacer) sequences were obtained from each specimen to confirm the determinations. Key words—aphyllophoroid fungi, fungal biodiversity, DNA barcoding, fungal cultures, ITS rDNA Introduction Polypores are a large group of Basidiomycota with poroid hymenophores on the underside of fruiting bodies, which may be pileate, resupinate, or effused-reflexed, and with textures that are typically corky, leathery, tough, or even woody hard (Härkönen & al. 2015). Formerly, polypores were treated mostly in Polyporaceae Corda s.l. (under Polyporales) and Hymenochaetaceae Imazeki & Toki s.l. (under Hymenochaetales), with some species in Corticiaceae Herter s.l. (Gilbertson & Ryvarden 1986, 1987; Ryvarden & Melo 2014). However, modern DNA-based phylogenetic studies distribute polyporoid genera across at least 12 orders of Agaricomycetes Doweld, e.g., Polyporales Gäum., Hymenochaetales Oberw., Russulales Kreisel ex P.M. Kirk & al., Agaricales Underw. (Hibbett & al. 2007, Zhao & al. 2015). 46 ... Chen & al. Most polypores are wood-rotters that decompose the cellulose, hemicellulose, or lignin of woody biomass in forests; these fungi are either saprobes on trees, stumps, and fallen branches or parasites on living tree trunks or roots and therefore play a crucial role in nutrient recycling for the earth (Härkönen & al. -
Česká Vědecká Společnost Pro Mykologii
Č eskoslovenská VĚDECKÁ SPOLEČNOST PRO MYKOLOGII ČESKA 26 4 ACADEMIA/PRAHA ŘÍJEN 1972 . — ----- - - -- -------------------------------- Če s k á m y k o l o g i e Časopis Čs. vědecké společnosti pro mykologii pro šíření znalosti hub po stránce vědecké i praktické Ročník 26 Číslo 4 Říjen 1972 Vydává Cs. vědecká společnost pro mykologii v Nakladatelství Československé akademie věd Vedoucí redaktor: člen korespondent ČSAV Albert Pilát, doktor biologických věd Redakční rada: akademik Ctibor Blattný, doktor zemědělských věd, univ. prof. Karel Cejp, doktor biologických věd, dr. Petr Fragner, MUDr. Joseí Herink, dr. František Kotlaba, kan didát biologických věd, inž. Karel Kříž, prom. biol. Zdeněk Pouzar, dr. František Šmarda, doc. dr. Zdeněk Urban, kandidát biologických věd. Výkonný redaktor: dr. Mirko Svrček, kandidát biologických věd Příspěvky zasílejte na adresu výkonného redaktora: Praha 1, Václavské nám. 68, Národní muzeum, telefon 261441 — 5, linka 87. 3. sešit vyšel 20. července 1972 OBSAH A. Pilát: K 20. výročí založení Československé akademie v ěd .........................................................193 Z. Pouzar: Příspěvek k poznání rodu krásnoporka — Albatrellus (Polyporaceae) I. Přehled druhů severního mírného p á s u .......................................................................................... 194 J. Veselský a R. Watlíng- Nový druh rodu Conocybe s ornamentovanými basidiosporam i...................................................................................................................................................201 -
Polypores from Shennongjia Nature Reserve in Hubei Province, Central
Cryptogamie,Mycologie, 2008, 29 (3): 267-277 © 2008 Adac. Tous droits réservés Polypores from Shennongjia Nature Reserve in Hubei Province,Central China JuanLI a, b ,Hong XiaXIONG b &Yu Cheng DAIa* a Institute of Applied Ecology,Chinese Academy of Sciences, Shenyang 110016,China, [email protected] b Graduate University,Chinese Academy of Sciences,Beijing 100049,China, Abstract – During 2004 to 2006, investigations on wood-inhabiting fungi were carried out in Shennongjia Nature Reserve of Hubei Province, in central China. About 600 specimens of poroid wood-inhabiting fungi were collected, among which several specimens of an unidentified species of Albatrellus, described and illustrated as Albatrellus zhuangii sp. nov. 139 species belonging to 55 genera of polypores were also identified from this Nature Reserve, of which about 60%new for the studied area. Albatrellus / China / Polyporales / taxonomy Résumé – Entre 2004 et 2006, 600 spécimens de champignons lignivores ont été collectés dans la réserve naturelle de Shennongjia dans la province centrale du Hubei,Chine. Parmi ces collectes, une espèce non décrite d’Albatrellus a été mise en évidence. Elle est décrite et illustrée sous le nom d’Albatrellus zhuangii. 139 espèces de polypores ont également été identifiées parmi ces collectes, 60 % de ceux-ci étant nouveaux pour la région. Albatrellus / Chine / Polyporales / taxonomie INTRODUCTION The Shennongjia Nature Reserve lies in Hubei Province, in central China, between 31° 15 ’-31° 75’ N and 109° 56’-110° 58’ E. it covers a total area of 70647 hectares. The area was established as a national reserve in 1978, and is now recognized by the UNESCO as an International Biosphere Reserves. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G.