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The Complete Mitochondrial Genome of Spilonota Lechriaspis Meyrick (Lepidoptera: Tortricidae)
Mol Biol Rep (2011) 38:3757–3764 DOI 10.1007/s11033-010-0491-6 The complete mitochondrial genome of Spilonota lechriaspis Meyrick (Lepidoptera: Tortricidae) Jin-Liang Zhao • Yan-Yan Zhang • A-Rong Luo • Guo-Fang Jiang • Stephen L. Cameron • Chao-Dong Zhu Received: 22 July 2010 / Accepted: 9 November 2010 / Published online: 24 November 2010 Ó Springer Science+Business Media B.V. 2010 Abstract We determined the nucleotide sequence of the Introduction mitochondrial genome (mtgenome) of Spilonota lechria- spis Meyrick (Lepidoptera: Tortricidae). The entire closed Complete mitochondrial genome (mtgenome) sequences circular molecule is 15,368 bp and contains 37 genes with are seeing wider use as molecular markers for phyloge- the typical gene complement and order for lepidopteran netic, phylogeographic and ecological studies of insects mtgenomes. All tRNAs except tRNASer(AGN) can be folded [1–5] plus as a model system for genome biology [6–9]. into the typical cloverleaf secondary structures. The pro- Wolstenholme and Clary [10] reported the first insect tein-coding genes (PCGs) have typical mitochondrial start mtgenome sequence in 1985 for Drosophila. Up to 2006, codons, with the exception of COI, which uses the unusual there had been 46 complete or near complete mtgenome CGA one as is found in all other Lepidoptera sequenced to sequences lodged in GenBank [11], and the number has date. In addition, six of 13 PCGs harbor the incomplete rapidly increased in the last five years, with to 198 ones in termination codons, a single T. The A ? T-rich region April, 2010. The mtgenome of insects as with other met- contains some conserved structures that are similar to those azoans is a closed-circular molecule ranging in size found in other lepidopteran mtgenomes, including a from 14 to 20 kb, which encodes 37 genes, consisting structure combining the motif ‘ATAGA’, a 19-bp poly(T) of 13 PCGs, two ribosomal RNA (rRNA) genes, and 22 stretch and three microsatellite (AT)n elements which are transfer RNA (tRNA) genes [12]. -
Lepidoptera: Noctuoidea: Erebidae) and Its Phylogenetic Implications
EUROPEAN JOURNAL OF ENTOMOLOGYENTOMOLOGY ISSN (online): 1802-8829 Eur. J. Entomol. 113: 558–570, 2016 http://www.eje.cz doi: 10.14411/eje.2016.076 ORIGINAL ARTICLE Characterization of the complete mitochondrial genome of Spilarctia robusta (Lepidoptera: Noctuoidea: Erebidae) and its phylogenetic implications YU SUN, SEN TIAN, CEN QIAN, YU-XUAN SUN, MUHAMMAD N. ABBAS, SAIMA KAUSAR, LEI WANG, GUOQING WEI, BAO-JIAN ZHU * and CHAO-LIANG LIU * College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei, 230036, China; e-mails: [email protected] (Y. Sun), [email protected] (S. Tian), [email protected] (C. Qian), [email protected] (Y.-X. Sun), [email protected] (M.-N. Abbas), [email protected] (S. Kausar), [email protected] (L. Wang), [email protected] (G.-Q. Wei), [email protected] (B.-J. Zhu), [email protected] (C.-L. Liu) Key words. Lepidoptera, Noctuoidea, Erebidae, Spilarctia robusta, phylogenetic analyses, mitogenome, evolution, gene rearrangement Abstract. The complete mitochondrial genome (mitogenome) of Spilarctia robusta (Lepidoptera: Noctuoidea: Erebidae) was se- quenced and analyzed. The circular mitogenome is made up of 15,447 base pairs (bp). It contains a set of 37 genes, with the gene complement and order similar to that of other lepidopterans. The 12 protein coding genes (PCGs) have a typical mitochondrial start codon (ATN codons), whereas cytochrome c oxidase subunit 1 (cox1) gene utilizes unusually the CAG codon as documented for other lepidopteran mitogenomes. Four of the 13 PCGs have incomplete termination codons, the cox1, nad4 and nad6 with a single T, but cox2 has TA. It comprises six major intergenic spacers, with the exception of the A+T-rich region, spanning at least 10 bp in the mitogenome. -
Giovanny Fagua González
Phylogeny, evolution and speciation of Choristoneura and Tortricidae (Lepidoptera) by Giovanny Fagua González A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Systematics and Evolution Department of Biological Sciences University of Alberta © Giovanny Fagua González, 2017 Abstract Leafrollers moths are one of the most ecologically and economically important groups of herbivorous insects. These Lepidoptera are an ideal model for exploring the drivers that modulate the processes of diversification over time. This thesis analyzes the evolution of Choristoneura Lederer, a well known genus because of its pest species, in the general context of the evolution of Tortricidae. It takes an inductive view, starting with analysis of phylogenetic, biogeographic and diversification processes in the family Tortricidae, which gives context for studying these processes in the genus Choristoneura. Tectonic dynamics and niche availability play intertwined roles in determining patterns of diversification; such drivers explain the current distribution of many clades, whereas events like the rise of angiosperms can have more specific impacts, such as on the diversification rates of herbivores. Tortricidae are a diverse group suited for testing the effects of these determinants on the diversification of herbivorous clades. To estimate ancestral areas and diversification patterns in Tortricidae, a complete tribal-level dated tree was inferred using molecular markers and calibrated using fossil constraints. The time-calibrated phylogeny estimated that Tortricidae diverged ca. 120 million years ago (Mya) and diversified ca. 97 Mya, a timeframe synchronous with the rise of angiosperms in the Early-Mid Cretaceous. Ancestral areas analysis supports a Gondwanan origin of Tortricidae in the South American plate. -
EUROPEAN JOURNAL of ENTOMOLOGYENTOMOLOGY ISSN (Online): 1802-8829 Eur
EUROPEAN JOURNAL OF ENTOMOLOGYENTOMOLOGY ISSN (online): 1802-8829 Eur. J. Entomol. 113: 482–488, 2016 http://www.eje.cz doi: 10.14411/eje.2016.063 ORIGINAL ARTICLE The mitochondrial genome of the Mediterranean fl our moth, Ephestia kuehniella (Lepidoptera: Pyralidae), and identifi cation of invading mitochondrial sequences (numts) in the W chromosome KATRIN LÄMMERMANN 1, 3, HEIKO VOGEL 2 and WALTHER TRAUT 3, * 1 Universität zu Lübeck, Institut für Neuro- und Bioinformatik, Ratzeburger Allee 160, D-23538 Lübeck, Germany; e-mail: [email protected] 2 Max Planck Institute for Chemical Ecology, Department of Entomology, Hans-Knoell-Strasse 8, D-07745 Jena, Germany; e-mail: [email protected] 3 Universität zu Lübeck, Zentrum für Medizinische Strukturbiologie, Institut für Biologie, Ratzeburger Allee 160, D-23538 Lübeck, Germany; e-mail: [email protected] Key words. Lepidoptera, Pyralidae, Ephestia kuehniella, mitogenome, Mediterranean fl our moth, phylogeny, numts, W chromosome Abstract. The Mediterranean fl our moth, Ephestia kuehniella is a widespread pest of stored products and a classical object in experimental biology. In the present study, we determined its complete mitochondrial genome sequence. The genome is circular, consists of 15,327 bp and comprises 13 protein-coding, 2 rRNA- and 22 tRNA-coding genes in an order typical for the Ditrysia clade of the order Lepidoptera. A phylogenetic study of the Lepidoptera based on complete mitochondrial genomes places E. kuehniella correctly in the family Pyralidae and supports major lepidopteran taxa as phylogenetic clades. The W chromosome of E. kuehniella is an exceptionally rich reservoir of originally mitochondrial sequences (numts). Around 0.7% of the W DNA was found to be of mitochondrial origin, 83% of the mitogenome sequence was represented between 1–11 × in the W chromosome. -
Redalyc.Catalogue of Eucosmini from China (Lepidoptera: Tortricidae)
SHILAP Revista de Lepidopterología ISSN: 0300-5267 [email protected] Sociedad Hispano-Luso-Americana de Lepidopterología España Zhang, A. H.; Li, H. H. Catalogue of Eucosmini from China (Lepidoptera: Tortricidae) SHILAP Revista de Lepidopterología, vol. 33, núm. 131, septiembre, 2005, pp. 265-298 Sociedad Hispano-Luso-Americana de Lepidopterología Madrid, España Available in: http://www.redalyc.org/articulo.oa?id=45513105 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative 265 Catalogue of Eucosmini from 9/9/77 12:40 Página 265 SHILAP Revta. lepid., 33 (131), 2005: 265-298 SRLPEF ISSN:0300-5267 Catalogue of Eucosmini from China1 (Lepidoptera: Tortricidae) A. H. Zhang & H. H. Li Abstract A total of 231 valid species in 34 genera of Eucosmini (Lepidoptera: Tortricidae) are included in this catalo- gue. One new synonym, Zeiraphera hohuanshana Kawabe, 1986 syn. n. = Zeiraphera thymelopa (Meyrick, 1936) is established. 28 species are firstly recorded for China. KEY WORDS: Lepidoptera, Tortricidae, Eucosmini, Catalogue, new synonym, China. Catálogo de los Eucosmini de China (Lepidoptera: Tortricidae) Resumen Se incluyen en este Catálogo un total de 233 especies válidas en 34 géneros de Eucosmini (Lepidoptera: Tor- tricidae). Se establece una nueva sinonimia Zeiraphera hohuanshana Kawabe, 1986 syn. n. = Zeiraphera thymelopa (Meyrick, 1938). 28 especies se citan por primera vez para China. PALABRAS CLAVE: Lepidoptera, Tortricidae, Eucosmini, catálogo, nueva sinonimia, China. Introduction Eucosmini is the second largest tribe of Olethreutinae in Tortricidae, with about 1000 named spe- cies in the world (HORAK, 1999). -
The Mitochondrial Genome of the Mediterranean
EUROPEAN JOURNAL OF ENTOMOLOGYENTOMOLOGY ISSN (online): 1802-8829 Eur. J. Entomol. 113: 482–488, 2016 http://www.eje.cz doi: 10.14411/eje.2016.063 ORIGINAL ARTICLE The mitochondrial genome of the Mediterranean fl our moth, Ephestia kuehniella (Lepidoptera: Pyralidae), and identifi cation of invading mitochondrial sequences (numts) in the W chromosome KATRIN LÄMMERMANN 1, 3, HEIKO VOGEL 2 and WALTHER TRAUT 3, * 1 Universität zu Lübeck, Institut für Neuro- und Bioinformatik, Ratzeburger Allee 160, D-23538 Lübeck, Germany; e-mail: [email protected] 2 Max Planck Institute for Chemical Ecology, Department of Entomology, Hans-Knoell-Strasse 8, D-07745 Jena, Germany; e-mail: [email protected] 3 Universität zu Lübeck, Zentrum für Medizinische Strukturbiologie, Institut für Biologie, Ratzeburger Allee 160, D-23538 Lübeck, Germany; e-mail: [email protected] Key words. Lepidoptera, Pyralidae, Ephestia kuehniella, mitogenome, Mediterranean fl our moth, phylogeny, numts, W chromosome Abstract. The Mediterranean fl our moth, Ephestia kuehniella is a widespread pest of stored products and a classical object in experimental biology. In the present study, we determined its complete mitochondrial genome sequence. The genome is circular, consists of 15,327 bp and comprises 13 protein-coding, 2 rRNA- and 22 tRNA-coding genes in an order typical for the Ditrysia clade of the order Lepidoptera. A phylogenetic study of the Lepidoptera based on complete mitochondrial genomes places E. kuehniella correctly in the family Pyralidae and supports major lepidopteran taxa as phylogenetic clades. The W chromosome of E. kuehniella is an exceptionally rich reservoir of originally mitochondrial sequences (numts). Around 0.7% of the W DNA was found to be of mitochondrial origin, 83% of the mitogenome sequence was represented between 1–11 × in the W chromosome. -
REPORT on APPLES – Fruit Pathway and Alert List
EU project number 613678 Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens Work package 1. Pathways of introduction of fruit pests and pathogens Deliverable 1.3. PART 5 - REPORT on APPLES – Fruit pathway and Alert List Partners involved: EPPO (Grousset F, Petter F, Suffert M) and JKI (Steffen K, Wilstermann A, Schrader G). This document should be cited as ‘Wistermann A, Steffen K, Grousset F, Petter F, Schrader G, Suffert M (2016) DROPSA Deliverable 1.3 Report for Apples – Fruit pathway and Alert List’. An Excel file containing supporting information is available at https://upload.eppo.int/download/107o25ccc1b2c DROPSA is funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration (grant agreement no. 613678). www.dropsaproject.eu [email protected] DROPSA DELIVERABLE REPORT on Apples – Fruit pathway and Alert List 1. Introduction ................................................................................................................................................... 3 1.1 Background on apple .................................................................................................................................... 3 1.2 Data on production and trade of apple fruit ................................................................................................... 3 1.3 Pathway ‘apple fruit’ ..................................................................................................................................... -
The Complete Mitochondrial Genomes of Two Ghost Moths, Thitarodes
Cao et al. BMC Genomics 2012, 13:276 http://www.biomedcentral.com/1471-2164/13/276 RESEARCH ARTICLE Open Access The complete mitochondrial genomes of two ghost moths, Thitarodes renzhiensis and Thitarodes yunnanensis: the ancestral gene arrangement in Lepidoptera Yong-Qiang Cao1,2†, Chuan Ma3†, Ji-Yue Chen1 and Da-Rong Yang1* Abstract Background: Lepidoptera encompasses more than 160,000 described species that have been classified into 45–48 superfamilies. The previously determined Lepidoptera mitochondrial genomes (mitogenomes) are limited to six superfamilies of the lineage Ditrysia. Compared with the ancestral insect gene order, these mitogenomes all contain a tRNA rearrangement. To gain new insights into Lepidoptera mitogenome evolution, we sequenced the mitogenomes of two ghost moths that belong to the non-ditrysian lineage Hepialoidea and conducted a comparative mitogenomic analysis across Lepidoptera. Results: The mitogenomes of Thitarodes renzhiensis and T. yunnanensis are 16,173 bp and 15,816 bp long with an A + T content of 81.28 % and 82.34 %, respectively. Both mitogenomes include 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and the A + T-rich region. Different tandem repeats in the A + T-rich region mainly account for the size difference between the two mitogenomes. All the protein-coding genes start with typical mitochondrial initiation codons, except for cox1 (CGA) and nad1 (TTG) in both mitogenomes. The anticodon of trnS(AGN) in T. renzhiensis and T. yunnanensis is UCU instead of the mostly used GCU in other sequenced Lepidoptera mitogenomes. The 1,584-bp sequence from rrnS to nad2 was also determined for an unspecified ghost moth (Thitarodes sp.), which has no repetitive sequence in the A + T-rich region. -
Rules and Regulations Federal Register Vol
22619 Rules and Regulations Federal Register Vol. 80, No. 78 Thursday, April 23, 2015 This section of the FEDERAL REGISTER DATES: Effective May 26, 2015. fly (Bactrocera dorsalis) is known to contains regulatory documents having general FOR FURTHER INFORMATION CONTACT: Mr. exist, we proposed to require treatment applicability and legal effect, most of which David B. Lamb, Senior Regulatory in accordance with 7 CFR 305.2, which are keyed to and codified in the Code of Policy Specialist, RPM, PPQ, APHIS, provides that approved treatment Federal Regulations, which is published under schedules are set out in the Plant 50 titles pursuant to 44 U.S.C. 1510. 4700 River Road Unit 133, Riverdale, MD 20737–1231; (301) 851–2018. Protection and Quarantine (PPQ) The Code of Federal Regulations is sold by SUPPLEMENTARY INFORMATION: Treatment Manual, found online at the Superintendent of Documents. Prices of http://www.aphis.usda.gov/import_ new books are listed in the first FEDERAL Background export/plants/manuals/ports/ REGISTER issue of each week. The regulations in ‘‘Subpart—Fruits downloads/treatment.pdf. and Vegetables’’ (7 CFR 319.56–1 We note that we are changing the through 319.56–71, referred to below as bagging protocol from that which was DEPARTMENT OF AGRICULTURE the regulations) prohibit or restrict the set out in the proposed rule. The importation of fruits and vegetables into proposed systems approach would have Animal and Plant Health Inspection the United States from certain parts of required that bags remain on the fruit Service the world to prevent the introduction until its arrival at the packinghouse. -
Characterization of the Complete Mitochondrial Genome of Leucoma
www.nature.com/scientificreports OPEN Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) Received: 27 May 2016 Accepted: 18 November 2016 and Comparison with Other Published: 15 December 2016 Lepidopteran Insects Yu-Xuan Sun, Lei Wang, Guo-Qing Wei, Cen Qian, Li-Shang Dai, Yu Sun, Muhammad Nadeem Abbas, Bao-Jian Zhu & Chao-Liang Liu The complete mitochondrial genome (mitogenome) of Leucoma salicis (Lepidoptera: Lymantriidae) was sequenced and annotated. It is a circular molecule of 15,334 bp, containing the 37 genes usually present in insect mitogenomes. All protein-coding genes (PCGs) are initiated by ATN codons, other than cox1, which is initiated by CGA. Three of the 13 PCGs had an incomplete termination codon, T or TA, while the others terminated with TAA. The relative synonymous codon usage of the 13 protein- coding genes (PCGs) was consistent with those of published lepidopteran sequences. All tRNA genes had typical clover-leaf secondary structures, except for the tRNASer (AGN), in which the dihydrouridine (DHU) arm could not form a stable stem-loop structure. The A + T-rich region of 325 bp had several distinctive features, including the motif ‘ATAGA’ followed by an 18 bp poly-T stretch, a microsatellite- Met like (AT)7 element, and an 11-bp poly-A present immediately upstream of tRNA . Relationships among 32 insect species were determined using Maximum Likelihood (ML), Neighbor Joining (NJ) and Bayesian Inference (BI) phylogenetic methods. These analyses confirm thatL. salicis belongs to the Lymantriidae; and that Lymantriidae is a member of Noctuoidea, and is a sister taxon to Erebidae, Nolidae and Noctuidae, most closely related to Erebidae. -
Pest Control Composition and Method of Preventing Pest Damage
(19) & (11) EP 2 092 826 A1 (12) EUROPEAN PATENT APPLICATION published in accordance with Art. 153(4) EPC (43) Date of publication: (51) Int Cl.: 26.08.2009 Bulletin 2009/35 A01N 51/00 (2006.01) A01N 41/06 (2006.01) A01N 43/50 (2006.01) A01N 43/80 (2006.01) (2006.01) (2006.01) (21) Application number: 07832364.9 A01N 47/38 A01P 3/00 A01P 7/04 (2006.01) (22) Date of filing: 22.11.2007 (86) International application number: PCT/JP2007/072635 (87) International publication number: WO 2008/065960 (05.06.2008 Gazette 2008/23) (84) Designated Contracting States: • EZAKI, Ryutaro AT BE BG CH CY CZ DE DK EE ES FI FR GB GR Mobara-shi HU IE IS IT LI LT LU LV MC MT NL PL PT RO SE Chiba 297-0017 (JP) SI SK TR • DAITO, Hidenori Mobara-shi (30) Priority: 29.11.2006 JP 2006321404 Chiba 297-0017 (JP) (71) Applicant: MITSUI CHEMICALS AGRO, INC. (74) Representative: Wytenburg, Wilhelmus Johannes Minato-ku, et al Tokyo 105-7117 (JP) Mewburn Ellis LLP 33 Gutter Lane (72) Inventors: London • YAMADA, Eiichi EC2V 8AS (GB) Mobara-shi Chiba 297-0017 (JP) (54) PEST CONTROL COMPOSITION AND METHOD OF PREVENTING PEST DAMAGE (57) The invention provides a plant disease and in- composition and a plant disease and insect damage pre- sect damage control composition including, as active in- vention method with very low toxicity to mammals and gredients, dinotefuran and at least one fungicidal com- fishes, the composition and method showing an effect pound; and a plant desease and insect damage preven- against plural pathogens and pest insects, including tion method that includes applying such a composition emerging resistant pathogens and resistant pest insect, to a plant body, soil, plant seed, stored cereal, stored by application to a plant body, soil, plant seed, stored legume, stored fruit, stored vegetable, silage, stored flow- cereal, stored legume, stored fruit, stored vegetable, si- ering plant, or export/import timber. -
The Complete Mitochondrial Genome of Ctenoptilum Vasava (Lepidoptera: Hesperiidae: Pyrginae) and Its Phylogenetic Implication
Hindawi Publishing Corporation Comparative and Functional Genomics Volume 2012, Article ID 328049, 13 pages doi:10.1155/2012/328049 Research Article The Complete Mitochondrial Genome of Ctenoptilum vasava (Lepidoptera: Hesperiidae: Pyrginae) and Its Phylogenetic Implication Jiasheng Hao,1, 2 Qianqian Sun,1 Huabin Zhao,3 Xiaoyan Sun,2 Yong hua Gai, 2 and Qun Yang2 1 College of Life Sciences, Anhui Normal University, Wuhu 241000, China 2 SKLPS, LPS, Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China 3 Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA Correspondence should be addressed to Jiasheng Hao, [email protected] and Qun Yang, [email protected] Received 6 November 2011; Accepted 19 December 2011 Academic Editor: Elena Pasyukova Copyright © 2012 Jiasheng Hao et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. We here report the first complete mitochondrial (mt) genome of a skipper, Ctenoptilum vasava Moore, 1865 (Lepidoptera: Hesperiidae: Pyrginae). The mt genome of the skipper is a circular molecule of 15,468 bp, containing 2 ribosomal RNA genes, 24 putative transfer RNA (tRNA), genes including an extra copy of trnS (AGN) and a tRNA-like insertion trnL (UUR), 13 protein- coding genes and an AT-rich region. All protein-coding genes (PCGs) are initiated by ATN codons and terminated by the typical stop codon TAA or TAG, except for COII which ends with a single T. The intergenic spacer sequence between trnS (AGN) and ND1 genes also contains the ATACTAA motif.