Article Genome-Wide Homozygosity Patterns and Evidence for Selection in a Set of European and Near Eastern Horse Breeds Gertrud Grilz-Seger 1,*, Markus Neuditschko 2, Anne Ricard 3, Brandon Velie 4,5, Gabriella Lindgren 4,6,, Matjaz Mesarič 7, Marko Cotman 8, Michaela Horna 9, Max Dobretsberger 1, Gottfried Brem 1 and Thomas Druml 1 1 Institute of Animal Breeding and Genetics, University of Veterinary Sciences Vienna, Veterinärplatz 1, 1210 Vienna, Austria;
[email protected] (M.D.);
[email protected] (G.B.);
[email protected] (T.D.) 2 Agroscope, Swiss National Stud Farm, Les Longs Prés, CH-1580 Avenches, Switzerland;
[email protected] 3 UMR 1313 Génétique Animale et Biologie Intégrative, Institut National de la Recherche Agronomique, Domaine de Vilvert, Bat 211, 78352 Jouy-en-Josas, France;
[email protected] 4 Department of Animal Breeding & Genetics, Swedish University of Agricultural Sciences, Ulls väg 26, 750 07 Uppsala, Sweden;
[email protected] (B.V.);
[email protected] (G.L.) 5 School of Life and Environmental Sciences, University of Sydney, Eastern Ave, 2006 NSW Sydney, Australia 6 Livestock Genetics, Department of Biosystems, KU Leuven, 3001 Leuven, Belgium 7 Clinic for Reproduction and Large Animals, University of Ljubljana, Veterinary, Faculty, Cesta v Mestni log 47, 1000 Ljubljana, Slovenia;
[email protected] 8 Institute for Preclinical Sciences, University of Ljubljana, Veterinary Faculty, Gerbičeva 60, 1000 Ljubljana, Slovenia;
[email protected] 9 Department of Animal Husbandry, Slovak University of Agriculture in Nitra, Tr. A. Hlinku 2, 949 76 Nitra, Slovakia;
[email protected] * Correspondence:
[email protected] Received: 14 May 2019; Accepted: 26 June 2019; Published: 28 June 2019 Abstract: Intensive artificial and natural selection have shaped substantial variation among European horse breeds.