The First Finding of the Lichen Solorina Saccata at an Algific Talus Slope in Korea
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1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Systematique Et Ecologie Des Lichens De La Region D'oran
MINISTERE DE L’ENSEIGNEMENT SUPERIEUR ET DE LA RECHERCHE SCIENTIFIQUE FACULTE des SCIENCES de la NATURE et de la VIE Département de Biologie THESE Présentée par Mme BENDAIKHA Yasmina En vue de l’obtention Du Diplôme de Doctorat en Sciences Spécialité : Biologie Option : Ecologie Végétale SYSTEMATIQUE ET ECOLOGIE DES LICHENS DE LA REGION D’ORAN Soutenue le 27 / 06 / 2018, devant le jury composé de : Mr BELKHODJA Moulay Professeur Président Université d’Oran 1 Mr HADJADJ - AOUL Seghir Professeur Rapporteur Université d'Oran 1 Mme FORTAS Zohra Professeur Examinatrice Université d’Oran 1 Mr BELAHCENE Miloud Professeur Examinateur C. U. d’Ain Témouchent Mr SLIMANI Miloud Professeur Examinateur Université de Saida Mr AIT HAMMOU Mohamed MCA Invité Université de Tiaret A la Mémoire De nos Chers Ainés Qui Nous ont Ouvert la Voie de la Lichénologie Mr Ammar SEMADI, Professeur à la Faculté des Sciences Et Directeur du Laboratoire de Biologie Végétale et de l’Environnement À l’Université d’Annaba Mr Mohamed RAHALI, Docteur d’État en Sciences Agronomiques Et Directeur du Laboratoire de Biologie Végétale et de l’Environnement À l’École Normale Supérieure du Vieux Kouba – Alger REMERCIEMENTS Au terme de cette thèse, je tiens à remercier : Mr HADJADJ - AOUL Seghir Professeur à l’Université d’Oran 1 qui m’a encadré tout au long de ce travail en me faisant bénéficier de ses connaissances scientifiques et de ses conseils. Je tiens à lui exprimer ma reconnaissance sans bornes, Mr BELKHODJA Moulay Professeur à l’Université d’Oran 1 et lui exprimer ma gratitude -
The 2018 Classification and Checklist of Lichenicolous Fungi, with 2000 Non- Lichenized, Obligately Lichenicolous Taxa Author(S): Paul Diederich, James D
The 2018 classification and checklist of lichenicolous fungi, with 2000 non- lichenized, obligately lichenicolous taxa Author(s): Paul Diederich, James D. Lawrey and Damien Ertz Source: The Bryologist, 121(3):340-425. Published By: The American Bryological and Lichenological Society, Inc. URL: http://www.bioone.org/doi/full/10.1639/0007-2745-121.3.340 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. The 2018 classification and checklist of lichenicolous fungi, with 2000 non-lichenized, obligately lichenicolous taxa Paul Diederich1,5, James D. Lawrey2 and Damien Ertz3,4 1 Musee´ national d’histoire naturelle, 25 rue Munster, L–2160 Luxembourg, Luxembourg; 2 Department of Biology, George Mason University, Fairfax, VA 22030-4444, U.S.A.; 3 Botanic Garden Meise, Department of Research, Nieuwelaan 38, B–1860 Meise, Belgium; 4 Fed´ eration´ Wallonie-Bruxelles, Direction Gen´ erale´ de l’Enseignement non obligatoire et de la Recherche scientifique, rue A. -
Multi-Locus Phylogeny of Pleosporales: a Taxonomic, Ecological and Evolutionary Re-Evaluation
available online at www.studiesinmycology.org StudieS in Mycology 64: 85–102. 2009. doi:10.3114/sim.2009.64.04 Multi-locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re-evaluation Y. Zhang1, C.L. Schoch2, J. Fournier3, P.W. Crous4, J. de Gruyter4, 5, J.H.C. Woudenberg4, K. Hirayama6, K. Tanaka6, S.B. Pointing1, J.W. Spatafora7 and K.D. Hyde8, 9* 1Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China; 2National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 3Las Muros, Rimont, Ariège, F 09420, France; 4CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; 5Plant Protection Service, P.O. Box 9102, 6700 HC Wageningen, The Netherlands; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan; 7Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 93133, U.S.A.; 8School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand; 9International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. China 650034 *Correspondence: Kevin D. Hyde, [email protected] Abstract: Five loci, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, are used for analysing 129 pleosporalean taxa representing 59 genera and 15 families in the current classification ofPleosporales . The suborder Pleosporineae is emended to include four families, viz. Didymellaceae, Leptosphaeriaceae, Phaeosphaeriaceae and Pleosporaceae. In addition, two new families are introduced, i.e. -
Channel Islands Checklist of Lichens
Opuscula Philolichenum, 11: 145-302. 2012. *pdf effectively published online 23October2012 via (http://sweetgum.nybg.org/philolichenum/) The Annotated Checklist of Lichens, Lichenicolous and Allied Fungi of Channel Islands National Park 1 2 KERRY KNUDSEN AND JANA KOCOURKOVÁ ABSTRACT. – For Channel Islands National Park, at the beginning of the 21st century, a preliminary baseline of diversity of 504 taxa in 152 genera and 56 families is established, comprising 448 lichens, 48 lichenicolous fungi, and 8 allied fungi. Verrucaria othmarii K. Knudsen & L. Arcadia nom. nov. is proposed for the illegitimate name V. rupicola (B. de Lesd.) Breuss, concurrently a neotype is also designated. Placidium boccanum is reported new for North America and California. Bacidia coprodes and Polycoccum pulvinatum are reported new for California. Catillaria subviridis is verified as occurring in California. Acarospora rhabarbarina is no longer recognized as occurring in North America. Seven species are considered endemic to Channel Islands National Park: Arthonia madreana, Caloplaca obamae, Dacampia lecaniae, Lecania caloplacicola, Lecania ryaniana, Plectocarpon nashii and Verrucaria aspecta. At least 54 species, many of which occur in Mexico, are only known in California from Channel Islands National Park INTRODUCTION Channel Islands National Park (heretofore referred to as CINP) in Ventura and Santa Barbara Counties in southern California consists of five islands totalling approximately 346 square miles in area (221331 acres, 89569 ha, 900 km2). Santa Barabara Island, with an area of 1.02 square miles (639 acres, 259 ha, 2.63 km2) is the smallest island in CINP. It is a considered a member of the southern islands which include San Nicolas Island, Santa Catalina Island, and San Clemente Island, all outside the boundaries of the national park. -
Constancea 85: Tucker, Catalog of California Lichens, References
Constancea 85, 2014 University and Jepson Herbaria California Lichen Catalog CATALOG OF LICHENS, LICHENICOLES, AND ALLIED FUNGI IN CALIFORNIA (second revision) Shirley C. Tucker REFERENCES ACHARIUS, E. 1810. Lichenographia Universalis. Dankwerts, Göttingen. ACHARIUS, E. 1814. Synopsis methodica lichenum, sistens omnes hujus ordinis naturatis detectas plantas, quas, secundum genera, species et varietates disposuit, characteribus et differentiis emendatis definivit, nec non synonymis et observationibus selectis illustravit auctor. Lund. 392 pp. ADLER, M. T., & T. AHTI. 1996. The distinction of Punctelia perreticulata and P. subrudecta (Parmeliaceae; Lecanorales). Lichenologist 28: 431–436. AHTI, T. 1966. Parmelia olivacea and the allied non-isidiate and non-sorediate corticolous lichens in the northern hemisphere. Acta Botanica Fennica 70: 1–68. AHTI, T. 1969. Notes on brown species of Parmelia in North America. The Bryologist 72: 233–239. AHTI, T. 1980a. Nomenclatural notes on Cladonia species. Lichenologist 12: 125–133. AHTI, T. 1980b. Taxonomic revision of Cladonia gracilis and its allies. Annales Botanici Fennici 17: 195–243. AHTI, T. 1984. The status of Cladina as a genus segregated from Cladonia, in H. Hertel & F. Oberwinkler (eds.), Beitrage zur Lichenologie. Festschrift J. Poelt. Beihefte zur Nova Hedwigia 79: 25–61. AHTI, T. 2000. Cladoniaceae. 1. Flora Neotropica 78. New York Botanical Garden, Bronx. AHTI, T. 2007. Further studies on the Cladonia verticillata group (Lecanorales) in East Asia and western North America, in A. Frisch, U. Lange & B. Staiger, Lichenologische Nebenstunden. Contributions to Lichen Taxonomy and Ecology in Honour of Klaus Kalb. Bibliotheca Lichenologica 96: 5–19. AHTI, T., & P. T. DEPRIEST. 2001. New combinations of Cladina epithets in Cladonia (Ascomycotina: Cladoniaceae). -
Notes on Ascomycete Systematics Nos. 4408 - 4750
VOLUME 13 DECEMBER 31, 2007 Notes on ascomycete systematics Nos. 4408 - 4750 H. Thorsten Lumbsch and Sabine M. Huhndorf (eds.) The Field Museum, Department of Botany, Chicago, USA Abstract Lumbsch, H. T. and S.M. Huhndorf (ed.) 2007. Notes on ascomycete systematics. Nos. 4408 – 4750. Myconet 13: 59 – 99. The present paper presents 342 notes on the taxonomy and nomenclature of ascomycetes (Ascomycota) at the generic and higher levels. Introduction The series ”Notes on ascomycete systematics” has been published in Systema Ascomycetum (1986-1998) and in Myconet since 1999 as hard copies and now at its new internet home at URL: http://www.fieldmuseum.org/myconet/. The present paper presents 342 notes on the taxonomy and nomenclature of ascomycetes (Ascomycota) at the generic and higher levels. The date of electronic publication is given within parentheses at the end of each entry. Notes 4476. Acanthotrema A. Frisch that the genera Acarospora, Polysporinopsis, and Sarcogyne are not monophyletic in their current This monotypic genus was described by Frisch circumscription; see also notes under (2006) to accommodate Thelotrema brasilianum; Acarospora (4477) and Polysporinopsis (4543). see note under Thelotremataceae (4561). (2006- (2006-10-18) 10-18) 4568. Aciculopsora Aptroot & Trest 4477. Acarospora A. Massal. This new genus is described for a single new The genus is restricted by Crewe et al. (2006) to lichenized species collected twice in lowland dry a monophyletic group of taxa related to the type forests of NW Costa Rica (Aptroot et al. 2006). species A. schleicheri. The A. smaragdula group It is placed in Ramalinaceae based on ascus-type. -
A Revised Catalog of Arizona Lichens
A REVISED CATALOG OF ARIZONA LICHENS Scott T. Bates University of Colorado at Boulder Rm. 318 CIRES Bldg. Boulder, CO 80309 Anne Barber Edward Gilbert Robin T. Schroeder and Thomas H. Nash III School of Life Sciences Arizona State University P. O. Box 874601 Tempe, AZ 85282-4601 ABSTRACT This revised “catalog” of lichens includes 969 species of lichenized fungi (lichens) presented for the state of Arizona (USA), and updates the original catalog published in 1975 by Nash and Johnsen. These taxa are derived from within 5 classes and over 17 orders and 54 families (the latter two with 3 and 4 additional groups of uncertain taxonomic position, “Incertae sedis”) in the phylum Ascomycota. The total number of species reported here represents approximately 20% of all species known from the North American lichen flora. The list was compiled by extracting Arizona records from the three volume published set of the Lichen Flora of the Greater Sonoran Desert Region, a collaborative, authoritative treatment of lichen groups for this region that encompasses the entire state of Arizona. INTRODUCTION Nearly 80,000 species of fungi are known to science (Schmit and Mueller 2007). Of these, approximately 17% are lichenized, forming symbioses with green algae (Chlorophyta, Viridiplantae) or the so called blue-green algae (Cyanobacteria, Bacteria). These relationships produce symbiotic organisms commonly called lichens. The fungal partner (mycobiont) is thought to benefit by having access to photosynthates produced by the “algae” (photobiont), which, within the symbiosis, is thought to receive some form of protection (e.g., against desiccation or UV radiation); however, evidence for other interpretations (e.g., controlled parasitism) exist (see Nash 2008a). -
National Park Service U.S
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The Lichen Flora of Joshua Tree National Park An Annotated Checklist Natural Resource Technical Report NPS/JOTR/NRTR—2013/743 ON THIS PAGE Typical lichen mosaics on granite. Photographs by: Jana Kocourková. ON THE COVER Joshua Tree National Park. From summit of Malapai Hill looking southeast toward the Hexie Mountains (left) and the Little San Bernardino Mountains (right) in the Mojave Desert. Photograph by: Jana Kocourková. The Lichen Flora of Joshua Tree National Park An Annotated Checklist Natural Resource Technical Report NPS/JOTR/NRTR—2013/743 Kerry Knudsen1, Mitzi Harding2, Josh Hoines2 1The Herbarium Department of Botany & Plant Sciences University of California Riverside, California 92521 2The National Park Service Joshua Tree National Park 74485 National Park Drive Twentynine Palms, CA 92277 May 2013 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Technical Report Series is used to disseminate results of scientific studies in the physical, biological, and social sciences for both the advancement of science and the achievement of the National Park Service mission. The series provides contributors with a forum for displaying comprehensive data that are often deleted from journals because of page limitations. -
Leptochidium Crenatulum ( Nyl.) P.M
Leptochidium crenatulum ( Nyl.) P.M. Jørg., eine Flechte neu für Mittel-Europa aus der Schweiz. Per M. Jørgensen Meylania 49 (2012): 14-15 Leptochidium albociliatum (Desm.) M. Choisy ist eine charakteristische, variable und weitverbreitete Flechte, deren systematische Stellung schwer zu bestimmen war. Obwohl sie oft in Polychidium eingereiht wurde, wurde sie meistens nach 1960 (z. B. von Henssen 1963) zu Leptochidium gestellt, eine Platzierung, die in mole- kulargenetischen Studien bestätigt wurde (siehe z.B. Muggia et al. 2011). Kürzlich (Wedin & al. 2007) wurde sie in die neue Familie Massalongiaceae gestellt, so dass diese Frage schliesslich endgültig geklärt zu sein scheint. Die Artabgrenzungen sind aber nach wie vor schwierig. Reich fruchtende, breitlo- bige Formen ohne Isidien sind in Amerika als Leptogium pilosellum Merril beschrieben worden und kommen an der Pazifik-Küste von Nord-Amerika vor. Ähnliche Formen Fig.1 Leptochidium crenatulum, Teil vom Exemplar aus der Schweiz. Masstab: 2 mm. Foto: Jan Berge. findet man sowohl in Makaronesien als auch im südwestlichen Europa. Sie sind nicht scharf abgegrenzt von der Hauptform, welche meistens aufsteigende, krenulierte Lo- Schweiz, Zürich, auf «Nagelfluh» pr. Gossau, 1886 E. Hegetschweiler leg. (B ex ben mit Isidien (selten fruchtend) hat. Nähere Untersuchungen sind notwendig, um Herb. Reimers) die Abgrenzung beider Arten (sowie anderer abweichender Formen) zu klären. Degelius (1982) hat aber eine charakteristische zilienlose Varietät von der typi- Danksagung sche Art, Leptochidium albociliatum, aus Norwegen beschrieben (var. eciliatum), die Ich möchte besonders Dr. Rosmarie Honegger, Zürich danken für Klärung der sich als gute Art bei der Revision Skandinavischer Proben (Jørgensen 2006) zeigte, Schweizer Lokalität, sowie den Kuratoren der zitierten Herbarien für die Auslei- und unter dem älteren Namen als Art, Leptochidium crenatulum (Nyl.) P.M.Jørg. -
Do Photobiont Switch and Cephalodia Emancipation Act As Evolutionary Drivers in the Lichen Symbiosis? a Case Study in the Pannariaceae (Peltigerales)
Do Photobiont Switch and Cephalodia Emancipation Act as Evolutionary Drivers in the Lichen Symbiosis? A Case Study in the Pannariaceae (Peltigerales) Nicolas Magain*, Emmanue¨lSe´rusiaux Evolution and Conservation Biology Unit, University of Lie`ge, Lie`ge, Belgium Abstract Lichen symbioses in the Pannariaceae associate an ascomycete and either cyanobacteria alone (usually Nostoc; bipartite thalli) or green algae and cyanobacteria (cyanobacteria being located in dedicated structures called cephalodia; tripartite thalli) as photosynthetic partners (photobionts). In bipartite thalli, cyanobacteria can either be restricted to a well-delimited layer within the thallus (‘pannarioid’ thalli) or spread over the thallus that becomes gelatinous when wet (‘collematoid’ thalli). We studied the collematoid genera Kroswia and Physma and an undescribed tripartite species along with representatives of the pannarioid genera Fuscopannaria, Pannaria and Parmeliella. Molecular inferences from 4 loci for the fungus and 1 locus for the photobiont and statistical analyses within a phylogenetic framework support the following: (a) several switches from pannarioid to collematoid thalli occured and are correlated with photobiont switches; the collematoid genus Kroswia is nested within the pannarioid genus Fuscopannaria and the collematoid genus Physma is sister to the pannarioid Parmeliella mariana group; (b) Nostoc associated with collematoid thalli in the Pannariaceae are related to that of the Collemataceae (which contains only collematoid thalli), and never