Interpreting Sources and Endocrine Active Components of Trace Organic Contaminant Mixtures in Minnesota Lakes
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Retention Indices for Frequently Reported Compounds of Plant Essential Oils
Retention Indices for Frequently Reported Compounds of Plant Essential Oils V. I. Babushok,a) P. J. Linstrom, and I. G. Zenkevichb) National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA (Received 1 August 2011; accepted 27 September 2011; published online 29 November 2011) Gas chromatographic retention indices were evaluated for 505 frequently reported plant essential oil components using a large retention index database. Retention data are presented for three types of commonly used stationary phases: dimethyl silicone (nonpolar), dimethyl sili- cone with 5% phenyl groups (slightly polar), and polyethylene glycol (polar) stationary phases. The evaluations are based on the treatment of multiple measurements with the number of data records ranging from about 5 to 800 per compound. Data analysis was limited to temperature programmed conditions. The data reported include the average and median values of retention index with standard deviations and confidence intervals. VC 2011 by the U.S. Secretary of Commerce on behalf of the United States. All rights reserved. [doi:10.1063/1.3653552] Key words: essential oils; gas chromatography; Kova´ts indices; linear indices; retention indices; identification; flavor; olfaction. CONTENTS 1. Introduction The practical applications of plant essential oils are very 1. Introduction................................ 1 diverse. They are used for the production of food, drugs, per- fumes, aromatherapy, and many other applications.1–4 The 2. Retention Indices ........................... 2 need for identification of essential oil components ranges 3. Retention Data Presentation and Discussion . 2 from product quality control to basic research. The identifi- 4. Summary.................................. 45 cation of unknown compounds remains a complex problem, in spite of great progress made in analytical techniques over 5. -
Metabolic Engineering of Microbial Cell Factories for Biosynthesis of Flavonoids: a Review
molecules Review Metabolic Engineering of Microbial Cell Factories for Biosynthesis of Flavonoids: A Review Hanghang Lou 1,†, Lifei Hu 2,†, Hongyun Lu 1, Tianyu Wei 1 and Qihe Chen 1,* 1 Department of Food Science and Nutrition, Zhejiang University, Hangzhou 310058, China; [email protected] (H.L.); [email protected] (H.L.); [email protected] (T.W.) 2 Hubei Key Lab of Quality and Safety of Traditional Chinese Medicine & Health Food, Huangshi 435100, China; [email protected] * Correspondence: [email protected]; Tel.: +86-0571-8698-4316 † These authors are equally to this manuscript. Abstract: Flavonoids belong to a class of plant secondary metabolites that have a polyphenol structure. Flavonoids show extensive biological activity, such as antioxidative, anti-inflammatory, anti-mutagenic, anti-cancer, and antibacterial properties, so they are widely used in the food, phar- maceutical, and nutraceutical industries. However, traditional sources of flavonoids are no longer sufficient to meet current demands. In recent years, with the clarification of the biosynthetic pathway of flavonoids and the development of synthetic biology, it has become possible to use synthetic metabolic engineering methods with microorganisms as hosts to produce flavonoids. This article mainly reviews the biosynthetic pathways of flavonoids and the development of microbial expression systems for the production of flavonoids in order to provide a useful reference for further research on synthetic metabolic engineering of flavonoids. Meanwhile, the application of co-culture systems in the biosynthesis of flavonoids is emphasized in this review. Citation: Lou, H.; Hu, L.; Lu, H.; Wei, Keywords: flavonoids; metabolic engineering; co-culture system; biosynthesis; microbial cell factories T.; Chen, Q. -
The Pennsylvania State University the Graduate School Department
The Pennsylvania State University The Graduate School Department of Geosciences MOLECULAR AND ISOTOPIC INVESTIGATIONS OF THE BIOGEOCHEMISTRY OF ARCHAEAL ETHER LIPIDS A Thesis in Geosciences by Courtney Hanna Turich © 2006 Courtney Hanna Turich Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy December 2006 ii The thesis of Courtney Hanna Turich was reviewed and approved* by the following: Katherine H. Freeman Professor of Geosciences Graduate Program Chair Thesis Advisor Chair of Committee Mary Ann Bruns Associate Professor of Crop and Soil Sciences Michael A. Arthur Professor of Geosciences Christopher House Associate Professor of Geosciences A. Daniel Jones Professor of Chemistry *Signatures are on file in the Graduate School iii ABSTRACT Once thought to inhabit only extreme environments, the Archaea are now known to occur globally in oceans, marshes, lakes, sediments, and soils. Archaea abundance and metabolic diversity link these microbes to important biogeochemical transformations. Archaea also generate abundant and diagnostic membrane lipids that are widespread in modern environments as well as the sedimentary record. These lipid compounds offer important evidence for past Archaea distribution and activity, and are a key means for understanding archaeal contributions to biogeochemical cycles, especially carbon and nitrogen, over Earth’s history. To link records of naturally occurring lipid to their biological and metabolic origins, I studied archaeal lipid distributions from a global set of modern waters in order to test the hypothesis that specific lipid assemblages will correspond to specific genotypic groups. Cluster analysis showed that marine lipid distribution patterns fell into two groups: the epipelagic zone and mesopelagic/upwelling zones. -
Lipid Analysis of CO2-Rich Subsurface Aquifers Suggests an Autotrophy-Based Deep Biosphere with Lysolipids Enriched in CPR Bacteria
The ISME Journal (2020) 14:1547–1560 https://doi.org/10.1038/s41396-020-0624-4 ARTICLE Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria 1,2 3,4 1,3 3 3 Alexander J. Probst ● Felix J. Elling ● Cindy J. Castelle ● Qingzeng Zhu ● Marcus Elvert ● 5,6 6 1 7,9 7 Giovanni Birarda ● Hoi-Ying N. Holman ● Katherine R. Lane ● Bethany Ladd ● M. Cathryn Ryan ● 8 3 1 Tanja Woyke ● Kai-Uwe Hinrichs ● Jillian F. Banfield Received: 20 November 2018 / Revised: 5 February 2020 / Accepted: 25 February 2020 / Published online: 13 March 2020 © The Author(s) 2020. This article is published with open access Abstract Sediment-hosted CO2-rich aquifers deep below the Colorado Plateau (USA) contain a remarkable diversity of uncultivated microorganisms, including Candidate Phyla Radiation (CPR) bacteria that are putative symbionts unable to synthesize membrane lipids. The origin of organic carbon in these ecosystems is unknown and the source of CPR membrane lipids remains elusive. We collected cells from deep groundwater brought to the surface by eruptions of Crystal Geyser, sequenced 1234567890();,: 1234567890();,: the community, and analyzed the whole community lipidome over time. Characteristic stable carbon isotopic compositions of microbial lipids suggest that bacterial and archaeal CO2 fixation ongoing in the deep subsurface provides organic carbon for the complex communities that reside there. Coupled lipidomic-metagenomic analysis indicates that CPR bacteria lack complete lipid biosynthesis pathways but still possess regular lipid membranes. These lipids may therefore originate from other community members, which also adapt to high in situ pressure by increasing fatty acid unsaturation. -
Content and Composition of Isoflavonoids in Mature Or Immature
394 Journal of Health Science, 47(4) 394–406 (2001) Content and Composition of tivities1) and reported to be protective against can- cer, cardiovascular diseases and osteoporosis.3–9) Isoflavonoids in Mature or Much research has been reported about the content Immature Beans and Bean of isoflavonoids in soybeans and soybean-derived processed foods.10–23) In contrast, there are few re- Sprouts Consumed in Japan ports about the isoflavonoid content in beans other than soybeans.11,12,18,23) Yumiko Nakamura,* Akiko Kaihara, Japanese people are reported to ingest Kimihiko Yoshii, Yukari Tsumura, isoflavonoids mainly through the consumption of Susumu Ishimitsu, and Yasuhide Tonogai soybeans and its derived processed foods.20) Re- cently, we estimated that the Japanese daily intake Division of Food Chemistry, National Institute of Health Sci- of isoflavonoids from soybeans and soybean-based ences, Osaka Branch, 1–1–43 Hoenzaka, Chuo-ku, Osaka 540– processed foods is 27.80 mg per day (daidzein 0006, Japan (Received January 9, 2001; Accepted April 6, 2001) 12.02 mg, glycitein 2.30 mg and genistein 13.48 mg).24) However, isoflavonoid intake from the The content of 9 types of isoflavonoids (daidzein, consumption of immature beans, sprouts and beans glycitein, genistein, formononetin, biochanin A, other than soybeans has not been elucidated. Here coumestrol, daidzin, glycitin and genistin) in 34 do- we have measured the content of isoflavonoids in mestic or imported raw beans including soybeans, 7 mature and immature beans and bean sprouts con- immature beans and 5 bean sprouts consumed in Ja- sumed in Japan, and have compared the content and pan were systematically analyzed. -
Suspect and Target Screening of Natural Toxins in the Ter River Catchment Area in NE Spain and Prioritisation by Their Toxicity
toxins Article Suspect and Target Screening of Natural Toxins in the Ter River Catchment Area in NE Spain and Prioritisation by Their Toxicity Massimo Picardo 1 , Oscar Núñez 2,3 and Marinella Farré 1,* 1 Department of Environmental Chemistry, IDAEA-CSIC, 08034 Barcelona, Spain; [email protected] 2 Department of Chemical Engineering and Analytical Chemistry, University of Barcelona, 08034 Barcelona, Spain; [email protected] 3 Serra Húnter Professor, Generalitat de Catalunya, 08034 Barcelona, Spain * Correspondence: [email protected] Received: 5 October 2020; Accepted: 26 November 2020; Published: 28 November 2020 Abstract: This study presents the application of a suspect screening approach to screen a wide range of natural toxins, including mycotoxins, bacterial toxins, and plant toxins, in surface waters. The method is based on a generic solid-phase extraction procedure, using three sorbent phases in two cartridges that are connected in series, hence covering a wide range of polarities, followed by liquid chromatography coupled to high-resolution mass spectrometry. The acquisition was performed in the full-scan and data-dependent modes while working under positive and negative ionisation conditions. This method was applied in order to assess the natural toxins in the Ter River water reservoirs, which are used to produce drinking water for Barcelona city (Spain). The study was carried out during a period of seven months, covering the expected prior, during, and post-peak blooming periods of the natural toxins. Fifty-three (53) compounds were tentatively identified, and nine of these were confirmed and quantified. Phytotoxins were identified as the most frequent group of natural toxins in the water, particularly the alkaloids group. -
Author's Response
GEORG–AUGUST-UNIVERSITY OF GOETTINGEN Geoscience Centre Department of Geobiology GZG Reinhardt, Manuel Goldschmidtstr. 3 Univ.Göttingen▪ GZG▪Abt.Geobiologie▪Goldschmidtstr.3▪37077 Göttingen▪Germany 37077 Göttingen Germany Phone: +49(0)551-39 13756 E-mail: [email protected] http://www. geobiologie.uni-goettingen.de Associate editor Biogeosciences Dr. Marcel van der Meer Göttingen, 04/18/2019 Submission of the revised manuscript bg-2018-513 Dear Marcel van der Meer, Also on behalf of my co-authors I would like to thank you, Jan W. de Leeuw, and the two anonymous reviewers for the thoughtful comments. As requested, we included the previously suggested corrections into the manuscript (see replies to RC1– 3, March 9th). In order to help you to track our changes and modifications, we attached the following documents: (i) Reply to your comments (ii) Replies to all reviewer comments (RC1–3 from March 9th) (iii) Tracked changes version of the manuscript (iv) Tracked changes version of the supplement We trust that the revised manuscript will meet the requirements of you and the reviewers. Yours sincerely, Manuel Reinhardt Comment from the editor: “I do think there is one issue you could spend a bit more time on explaining or clarifying. You use the Pleistocene settings as analogs for Archean hydrothermal cherts and I think you need to spend a little bit more time on this to make it more than a way to “sell” your Pleistocene study. The analogy is comparable deposits, hydrothermal cherts, right? I think it is entirely valid to test your approach, methods and types of analysis on a more modern setting to see what works and what doesn’t, what type of information you get etc., before actually working on these really old deposits. -
Phylogenetics of Archaeal Lipids Amy Kelly 9/27/2006 Outline
Phylogenetics of Archaeal Lipids Amy Kelly 9/27/2006 Outline • Phlogenetics of Archaea • Phlogenetics of archaeal lipids • Papers Phyla • Two? main phyla – Euryarchaeota • Methanogens • Extreme halophiles • Extreme thermophiles • Sulfate-reducing – Crenarchaeota • Extreme thermophiles – Korarchaeota? • Hyperthermophiles • indicated only by environmental DNA sequences – Nanoarchaeum? • N. equitans a fast evolving euryarchaeal lineage, not novel, early diverging archaeal phylum – Ancient archael group? • In deepest brances of Crenarchaea? Euryarchaea? Archaeal Lipids • Methanogens – Di- and tetra-ethers of glycerol and isoprenoid alcohols – Core mostly archaeol or caldarchaeol – Core sometimes sn-2- or Images removed due to sn-3-hydroxyarchaeol or copyright considerations. macrocyclic archaeol –PMI • Halophiles – Similar to methanogens – Exclusively synthesize bacterioruberin • Marine Crenarchaea Depositional Archaeal Lipids Biological Origin Environment Crocetane methanotrophs? methane seeps? methanogens, PMI (2,6,10,15,19-pentamethylicosane) methanotrophs hypersaline, anoxic Squalane hypersaline? C31-C40 head-to-head isoprenoids Smit & Mushegian • “Lost” enzymes of MVA pathway must exist – Phosphomevalonate kinase (PMK) – Diphosphomevalonate decarboxylase – Isopentenyl diphosphate isomerase (IPPI) Kaneda et al. 2001 Rohdich et al. 2001 Boucher et al. • Isoprenoid biosynthesis of archaea evolved through a combination of processes – Co-option of ancestral enzymes – Modification of enzymatic specificity – Orthologous and non-orthologous gene -
Combinatorial Biosynthesis of Non-Bacterial and Unnatural Flavonoids, Stilbenoids and Curcuminoids by Microorganisms Sueharu Horinouchi
J. Antibiot. 61(12): 709–728, 2008 THE JOURNAL OF REVIEW ARTICLE ANTIBIOTICS Combinatorial Biosynthesis of Non-bacterial and Unnatural Flavonoids, Stilbenoids and Curcuminoids by Microorganisms Sueharu Horinouchi Received: August 1, 2008 / Accepted: October 14, 2008 © Japan Antibiotics Research Association Abstract One of the approaches of combinatorial biosynthesis is combining genes from different organisms and designing a new set of gene clusters to produce bioactive compounds, leading to diversification of both chemical and natural product libraries. This makes efficient use of the potential of the host organisms, especially when microorganisms are used. An Escherichia coli system, in which artificial biosynthetic pathways for production of plant-specific medicinal polyketides, such as flavonoids, stilbenoids, isoflavonoids, and curcuminoids, are assembled, has been designed and expressed. Starting with amino acids tyrosine and phenylalanine as substrates, this system yields naringenin, resveratrol, genistein, and curcumin, for example, all of which are beneficial to human health because of their wide variety of biological activities. Supplementation of unnatural carboxylic acids to the recombinant E. coli cells carrying the artificial pathways by precursor-directed biosynthesis results in production of unnatural compounds. Addition of decorating or modification enzymes to the artificial pathway leads to production of natural and unnatural flavonols, flavones, and methylated resveratrols. This microbial system is promising for construction of larger libraries by employing other polyketide synthases and decorating enzymes of various origins. In addition, the concept of building and expressing artificial biosynthetic pathways for production of non-bacterial and unnatural compounds in microorganisms should be successfully applied to production of not only plant-specific polyketides but also many other useful compound classes. -
Assessing the Use of Archaeal Lipids As Marine Environmental Proxies
EA41CH14-Ingalls ARI 30 April 2013 15:56 Assessing the Use of Archaeal Lipids as Marine Environmental Proxies Ann Pearson1 and Anitra E. Ingalls2 1Department of Earth and Planetary Sciences, Harvard University, Cambridge, Massachusetts 02138; email: [email protected] 2School of Oceanography, University of Washington, Seattle, Washington 98195; email: [email protected] Annu. Rev. Earth Planet. Sci. 2013. 41:359–84 Keywords First published online as a Review in Advance on paleothermometry, lipid biomarkers, TEX86, Thaumarchaeota, March 7, 2013 Euryarchaeota, marine prokaryotes The Annual Review of Earth and Planetary Sciences is online at earth.annualreviews.org Abstract by Harvard University on 12/05/13. For personal use only. This article’s doi: Archaea are abundant in marine and terrestrial aquatic environments, sed- 10.1146/annurev-earth-050212-123947 iments, and soils. They inhabit at least an 85◦C temperature range from Copyright c 2013 by Annual Reviews. the polar ocean to hydrothermal springs. Many Archaea produce membrane All rights reserved lipids called glycerol dialkyl glycerol tetraethers (GDGTs). Experiments on Annu. Rev. Earth Planet. Sci. 2013.41:359-384. Downloaded from www.annualreviews.org pure and enrichment cultures as well as an empirical correlation for ma- rine sediments (the TEX86 index) together show positive relationships be- tween temperature and the number of cyclopentane or cyclohexane rings in GDGTs. The resulting TEX86 paleotemperature proxy has been applied across a wide range of geologic history and depositional settings. The ex- act relationship between TEX86 and temperature, however, remains poorly understood. Environmental systems and cultures have different temperature dependencies, and the ecological niche(s) of aquatic Archaea are still a sub- ject of active investigation. -
Development and Optimization of a High Sensitivity LC-MS/MS Method for the Determination of Hesperidin and Naringenin in Rat Plasma: Pharmacokinetic Approach
molecules Article Development and Optimization of a High Sensitivity LC-MS/MS Method for the Determination of Hesperidin and Naringenin in Rat Plasma: Pharmacokinetic Approach Jesús Alfredo Araujo-León 1,* , Rolffy Ortiz-Andrade 2, Rivelino Armando Vera-Sánchez 1, Julio Enrique Oney-Montalvo 1, Tania Isolina Coral-Martínez 1 and Zulema Cantillo-Ciau 3 1 Chromatography Laboratory, Chemistry Faculty, Autonomous University of Yucatan, Mérida 97069, Mexico; [email protected] (R.A.V.-S.); [email protected] (J.E.O.-M.); [email protected] (T.I.C.-M.) 2 Pharmacology Laboratory, Chemistry Faculty, Autonomous University of Yucatan, Mérida 97069, Mexico; rolff[email protected] 3 Medicinal Chemistry Laboratory, Chemistry Faculty, Autonomous University of Yucatan, Mérida 97069, Mexico; [email protected] * Correspondence: [email protected]; Tel.: +52-999-922-5708 Academic Editor: Derek J. McPhee Received: 6 August 2020; Accepted: 12 September 2020; Published: 16 September 2020 Abstract: The purpose of this study was to develop, optimize, and fully validate a high-sensitivity methodology using UHPLC-MS/MS to simultaneously quantify hesperidin and naringenin in microsamples (100 µL) of murine plasma after intragastric administration of single pure flavonoids and a mixture. The optimization process allowed for high sensitivity with detection limits of approximately picogram order using an electrospray ionization (ESI) source in negative mode and an experiment based on multiple reaction monitoring (MRM). The validation parameters showed excellent linearity and detection limits, with a precision of less than 8% and a recovery of over 90%. This methodology was applied to compare the pharmacokinetic parameters for the administration of hesperidin and naringenin in individual form or in the form of a mixture. -
Insect-Induced Daidzein, Formononetin and Their Conjugates in Soybean Leaves
UC San Diego UC San Diego Previously Published Works Title Insect-induced daidzein, formononetin and their conjugates in soybean leaves. Permalink https://escholarship.org/uc/item/5pw0t3dx Journal Metabolites, 4(3) ISSN 2218-1989 Authors Murakami, Shinichiro Nakata, Ryu Aboshi, Takako et al. Publication Date 2014-07-04 DOI 10.3390/metabo4030532 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Metabolites 2014, 4, 532-546; doi:10.3390/metabo4030532 OPEN ACCESS metabolites ISSN 2218-1989 www.mdpi.com/journal/metabolites/ Article Insect-Induced Daidzein, Formononetin and Their Conjugates in Soybean Leaves Shinichiro Murakami 1, Ryu Nakata 1, Takako Aboshi 1, Naoko Yoshinaga 1, Masayoshi Teraishi 1, Yutaka Okumoto 1, Atsushi Ishihara 3, Hironobu Morisaka 1, Alisa Huffaker 2, Eric A Schmelz 2 and Naoki Mori 1,* 1 Graduate School of Agriculture, Kyoto University, Kitashirakawa, Sakyo, Kyoto 606-8502, Japan; E-Mails: [email protected] (S.M.); [email protected] (R.N.); [email protected] (T.A.); [email protected] (N.Y.); [email protected] (M.T.); [email protected] (Y.O.); [email protected] (H.M.) 2 Center for Medical, Agricultural, and Veterinary Entomology, Agricultural Research Service, USDA, 1600 S.W. 23RD Drive, Gainesville, FL 32606, USA; E-Mails: [email protected] (A.H.); [email protected] (E.A.S.) 3 Department of Agriculture, Tottori University, Koyama-machi 4-101, Tottori 680-8550, Japan; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +81-75-753-6307.